BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145512.4 + phase: 0 /pseudo
         (135 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SGCB_MESAU (Q60538) Beta-sarcoglycan (Beta-SG) (43 kDa dystrophi...    28  7.3
PCRB_METTH (O26652) PcrB protein homolog                               28  7.3
CARB_METMA (P58944) Carbamoyl-phosphate synthase large chain (EC...    28  7.3
SGCB_MOUSE (P82349) Beta-sarcoglycan (Beta-SG) (43 kDa dystrophi...    27  9.6
SGCB_HUMAN (Q16585) Beta-sarcoglycan (Beta-SG) (43 kDa dystrophi...    27  9.6
CPE1_MESAU (P51581) Cytochrome P450 2E1 (EC 1.14.14.1) (CYPIIE1)...    27  9.6

>SGCB_MESAU (Q60538) Beta-sarcoglycan (Beta-SG) (43 kDa
           dystrophin-associated glycoprotein) (43DAG)
          Length = 320

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 18/123 (14%)

Query: 9   LLISTTTNLLMSLIDFVYPDLNDNLGDQLFFQERGILA-PTLDSVEHVNEFMMSLIPGEE 67
           L I    NLL++L+ +    +  N  D + F E G+L    +  +  ++    S + G  
Sbjct: 74  LFILAVINLLITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGRR 133

Query: 68  KEYL--TSNS---IFRSGE------------NSDV*SEWFTPEFLNGIKSSGIPNHRLKL 110
            E L  T N+   +F+ G              SD+  ++F P   N + S+    H   L
Sbjct: 134 NENLVITGNNQPIVFQQGTTKLSVEKNKTSITSDIGMQFFDPRTQNILFSTDYETHEFHL 193

Query: 111 KVG 113
             G
Sbjct: 194 PSG 196


>PCRB_METTH (O26652) PcrB protein homolog
          Length = 248

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 33  LGDQLFFQERGILAPTLDSVEHVNEFMMSLIPGEEKEYLTSNSIFRSGENS 83
           LG +LF+ E G  AP     EHV E M++L+     + L      RSGE++
Sbjct: 166 LGMRLFYLEAGSGAP-----EHVPEEMIALVKRCTDQILIVGGGIRSGEDA 211


>CARB_METMA (P58944) Carbamoyl-phosphate synthase large chain (EC
           6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1073

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/68 (27%), Positives = 30/68 (43%), Gaps = 12/68 (17%)

Query: 41  ERGILAPTLDSVEHVNEFMMSLIPGEEKEYLTSNSIFRSGENSDV*SEWFTPEFLNGIKS 100
           ERG+    +  +  +N F +S +    K+ +      R+ E         TPEFL  +K 
Sbjct: 434 ERGMSIKEIAELTSINPFFISKM----KKIVEMEKCIRTEE--------LTPEFLREVKR 481

Query: 101 SGIPNHRL 108
            G P+ RL
Sbjct: 482 MGFPDSRL 489


>SGCB_MOUSE (P82349) Beta-sarcoglycan (Beta-SG) (43 kDa
           dystrophin-associated glycoprotein) (43DAG)
          Length = 320

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 18/123 (14%)

Query: 9   LLISTTTNLLMSLIDFVYPDLNDNLGDQLFFQERGILA-PTLDSVEHVNEFMMSLIPGEE 67
           L I    NLL++L+ +    +  N  D + F E G+L    +  +  ++    S + G  
Sbjct: 74  LFILAVINLLITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGRR 133

Query: 68  KEYL--TSNS---IFRSGE------------NSDV*SEWFTPEFLNGIKSSGIPNHRLKL 110
            E L  T N+   +F+ G              SD+  ++F P   N + S+    H   L
Sbjct: 134 NENLVITGNNQPIVFQQGTTKLSVEKNKTSITSDIGMQFFDPRTHNILFSTDYETHEFHL 193

Query: 111 KVG 113
             G
Sbjct: 194 PSG 196


>SGCB_HUMAN (Q16585) Beta-sarcoglycan (Beta-SG) (43 kDa
           dystrophin-associated glycoprotein) (43DAG) (A3b)
          Length = 318

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 18/123 (14%)

Query: 9   LLISTTTNLLMSLIDFVYPDLNDNLGDQLFFQERGILA-PTLDSVEHVNEFMMSLIPGEE 67
           L I    NL+++L+ +    +  N  D + F E G+L    +  +  ++    S + G  
Sbjct: 72  LFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGRR 131

Query: 68  KEYL--TSNS---IFRSG------EN------SDV*SEWFTPEFLNGIKSSGIPNHRLKL 110
            E L  T N+   +F+ G      EN      SD+  ++F P   N + S+    H   L
Sbjct: 132 NENLVITGNNQPIVFQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILFSTDYETHEFHL 191

Query: 111 KVG 113
             G
Sbjct: 192 PSG 194


>CPE1_MESAU (P51581) Cytochrome P450 2E1 (EC 1.14.14.1) (CYPIIE1)
           (P450-J)
          Length = 493

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 20/78 (25%), Positives = 40/78 (50%), Gaps = 12/78 (15%)

Query: 12  STTTNLLMSLIDFV-YPDLNDNLGDQL----------FFQERGILAPTLDSVEHVNEFMM 60
           +T+T L   L+  + YP++ + L +++           F++R +  P +D+V H  +  +
Sbjct: 303 TTSTTLRYGLLILMKYPEVEEKLHEEIDRVIGPSRVPVFKDR-LEMPYMDAVVHEIQRFI 361

Query: 61  SLIPGEEKEYLTSNSIFR 78
           SLIP       T +++FR
Sbjct: 362 SLIPSNLPHEATRDTMFR 379


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.144    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,313,335
Number of Sequences: 164201
Number of extensions: 626546
Number of successful extensions: 1388
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 6
length of query: 135
length of database: 59,974,054
effective HSP length: 98
effective length of query: 37
effective length of database: 43,882,356
effective search space: 1623647172
effective search space used: 1623647172
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)