BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145449.7 + phase: 0 /pseudo
(965 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 293 1e-78
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 218 6e-56
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 92 5e-18
YMT5_YEAST (Q04214) Transposon Ty1 protein B 92 7e-18
YJZ7_YEAST (P47098) Transposon Ty1 protein B 91 1e-17
YMU0_YEAST (Q04670) Transposon Ty1 protein B 91 1e-17
YME4_YEAST (Q04711) Transposon Ty1 protein B 91 1e-17
YMD9_YEAST (Q03434) Transposon Ty1 protein B 91 1e-17
YJZ9_YEAST (P47100) Transposon Ty1 protein B 91 1e-17
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 84 2e-15
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 55 9e-07
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 43 0.004
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 43 0.005
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 42 0.010
POL_IPMA (P11368) Putative Pol polyprotein [Contains: Integrase ... 42 0.010
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 42 0.010
POL_IPMAI (P12894) Probable Pol polyprotein [Contains: Integrase... 41 0.013
RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun... 40 0.039
MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia p... 40 0.039
IGEB_MOUSE (P03975) IgE-binding protein 39 0.067
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 293 bits (751), Expect = 1e-78
Identities = 195/576 (33%), Positives = 292/576 (49%), Gaps = 58/576 (10%)
Query: 33 SPDMIHRRLGHPSFDKLKVLVPQ--LSHLKSLD---CESCQLGKHVRASFPSSPNKRSKS 87
S D+ H+R+GH S L++L + +S+ K C+ C GK R SF +S ++R +
Sbjct: 421 SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTS-SERKLN 479
Query: 88 PFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQ 147
D+V+SDV GP + S G +Y+VTFID SR W+ +LK + Q+F F F + ++ +
Sbjct: 480 ILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERE 539
Query: 148 FGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTL 207
G+ ++ LRSDN EY F + +S GI H+ + P TPQ NGVAER + +V+ R++
Sbjct: 540 TGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSM 599
Query: 208 LINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVH 267
L A P FWG+A+ TACYLINR PS L EIP+ + K+ Y L+V+G F H
Sbjct: 600 LRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYS-HLKVFGCRAFAH 658
Query: 268 DLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPTTTS 327
R KL +++ C+F+GY + GYR + P ++ S DV F E + T +
Sbjct: 659 VPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRE-----SEVRTAA 713
Query: 328 STTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPIDS 387
++ + +IP + P ST ++P + T +
Sbjct: 714 DMSEKVKNGIIPNFVTIP------STSNNPTSAES------------------TTDEVSE 749
Query: 388 SDSAPKTVTT--DSSDSATAPISSPVVVPPEPSNDLPIALHKGKRSTANPHPVYNFLSYH 445
P V + D + P P+ + R + +P ++
Sbjct: 750 QGEQPGEVIEQGEQLDEGVEEVEHPT---QGEEQHQPLRRSERPRVESRRYPSTEYV--- 803
Query: 446 RLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQ---AMIDEMVALESNHTWELVSPSPGK 502
+S P+++ E LSH E Q AM +EM +L+ N T++LV GK
Sbjct: 804 -----------LISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGK 852
Query: 503 SIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTA 562
+ C+ VF +K D ++ R KARLV G+ Q G D+++ FSPV KMTS+R +++ A
Sbjct: 853 RPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAA 912
Query: 563 MKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGFVAWG 598
+ QLD+K AFLHGDLEEEIYMEQP GF G
Sbjct: 913 SLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 948
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 218 bits (555), Expect = 6e-56
Identities = 178/615 (28%), Positives = 276/615 (43%), Gaps = 69/615 (11%)
Query: 38 HRRLGHPSFDKL-----KVLVPQLSHLKSLD-----CESCQLGKHVRASFPSSPNKRS-K 86
H R GH S KL K + S L +L+ CE C GK R F +K K
Sbjct: 419 HERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTHIK 478
Query: 87 SPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKN 146
P +VHSDV GP ++ Y+V F+D F+ L+K +S +F F F ++ +
Sbjct: 479 RPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEA 538
Query: 147 QFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRT 206
F + L DN +EY F GI + + PHTPQ NGV+ER + + RT
Sbjct: 539 HFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKART 598
Query: 207 LLINAHAPFKFWGDAILTACYLINRMPSSVL--DNEIPQSLLFPKDPLYRVQLRVYGSTC 264
++ A FWG+A+LTA YLINR+PS L ++ P + K P Y LRV+G+T
Sbjct: 599 MVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKP-YLKHLRVFGATV 657
Query: 265 FVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFFASPT 324
+VH + + K ++ K +F+GY G++ + +F ++ DV ++T S
Sbjct: 658 YVH-IKNKQGKFDDKSFKSIFVGYE--PNGFKLWDAVNEKFIVARDVV-VDETNMVNSRA 713
Query: 325 TTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQ--SNPEFRRYGNIYERRHV----- 377
T + DS+ F + T+ + + N +F + E ++
Sbjct: 714 VKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKECDNIQFLKDSKESENKNFPNDSR 773
Query: 378 ---------EAPETSPI----DSSDSAPKTVT--------------------TDSSDSAT 404
E+ E I DS +S + +S +S T
Sbjct: 774 KIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESET 833
Query: 405 APISSPVVVPPEPSND-LPIALHKGKRSTANPHPVYNFLSYHRLSPSYFAFVSALSSV-- 461
A + + ND + I + +R P +SY+ S V ++
Sbjct: 834 AEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQ-----ISYNEEDNSLNKVVLNAHTIFN 888
Query: 462 SIPKTVHEALSHQE---WKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLD 518
+P + E + W++A+ E+ A + N+TW + K+IV R VF+VK
Sbjct: 889 DVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNEL 948
Query: 519 GQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFL 578
G R KARLVA G+TQ Y DY +TF+PVA+++S R +++ + Q+D+K AFL
Sbjct: 949 GNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFL 1008
Query: 579 HGDLEEEIYMEQPSG 593
+G L+EEIYM P G
Sbjct: 1009 NGTLKEEIYMRLPQG 1023
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 92.4 bits (228), Expect = 5e-18
Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 24/300 (8%)
Query: 36 MIHRRLGHPSFDKLKVLVPQ--LSHLKSLD----------CESCQLGK-----HVRASFP 78
+IHR LGH +F ++ + + +++LK D C C +GK HV+ S
Sbjct: 593 LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGS-- 650
Query: 79 SSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQ--LFGA 136
+ S PF +H+D++GP + Y+++F D +R W+ L DR + +
Sbjct: 651 RLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNV 710
Query: 137 FLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERK 196
F + + IKNQF + +++ D EY + F + GI + + +GVAER
Sbjct: 711 FTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERL 770
Query: 197 HCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQ 256
+ L++ RTLL + P W A+ + + N + S D Q L
Sbjct: 771 NRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLA--GLDITT 828
Query: 257 LRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFED 316
+ +G V++ P K+ R + L SR GY Y PS ++ + + +D
Sbjct: 829 ILPFGQPVIVNNHNPD-SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQD 887
Score = 36.2 bits (82), Expect = 0.43
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 18/124 (14%)
Query: 473 HQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIG 532
H+E Q + +M ++N ++ P K ++ +FN K DG KAR VA G
Sbjct: 1270 HKEISQLL--KMNTWDTNKYYDRNDIDP-KKVINSMFIFNKK--RDGTH---KARFVARG 1321
Query: 533 YTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMK-----R*PLFQLDIKNAFLHGDLEEEIY 587
Q + DT+ + +V + MT++ + QLDI +A+L+ D++EE+Y
Sbjct: 1322 DIQ-----HPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELY 1376
Query: 588 MEQP 591
+ P
Sbjct: 1377 IRPP 1380
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 92.0 bits (227), Expect = 7e-18
Identities = 97/409 (23%), Positives = 162/409 (38%), Gaps = 30/409 (7%)
Query: 37 IHRRLGHPSFDKLKVLVPQ--LSHLKSLD----------CESCQLGK-----HVRASFPS 79
IHR L H + ++ + +++ D C C +GK H++ S
Sbjct: 171 IHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLK 230
Query: 80 SPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQ--LFGAF 137
N S PF +H+D++GP + Y+++F D ++ W+ L DR + + F
Sbjct: 231 YQN--SYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVF 288
Query: 138 LTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKH 197
T + IKNQF + +++ D EY + F+ GI + + +GVAER +
Sbjct: 289 TTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLN 348
Query: 198 CHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQL 257
L+D RT L + P W AI + + N + S Q L L
Sbjct: 349 RTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLA--GLDISTL 406
Query: 258 RVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDT 317
+G V+D P K+ R + L SR GY Y PS ++ + + +
Sbjct: 407 LPFGQPVIVNDHNP-NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGK 465
Query: 318 PFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIY--ERR 375
+ T D + I + + ++S+ +F+ ++ + R
Sbjct: 466 ESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQQSNDLNIESDHDFQSDIELHPEQLR 525
Query: 376 HVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPP--EPSNDLP 422
+V + SP DS + P T T DS + I +P V P SN LP
Sbjct: 526 NVLSKAVSPTDS--TPPSTHTEDSKRVSKTNIRAPREVDPNISESNILP 572
Score = 37.0 bits (84), Expect = 0.25
Identities = 81/348 (23%), Positives = 131/348 (37%), Gaps = 101/348 (29%)
Query: 308 SADVTFFEDTPFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRR 367
S + T + P ++ T + T T Q + H P + T SS +SN
Sbjct: 628 SDNETNHTNVPISSTGGTNNKTVPQTSEQETEKRIIHR--SPSIDTSSS---ESN----- 677
Query: 368 YGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDL------ 421
HV PI +SD+ PK T+ S A P+ +PPEP +L
Sbjct: 678 -----SLHHVV-----PIKTSDTCPKE-NTEESIIADLPLPD---LPPEPPTELSDSFKE 723
Query: 422 --PI-------------------ALHKGKRSTAN-------PHPVYNFLSYHRLSPS--- 450
PI ++ KRS + +N + L P
Sbjct: 724 LPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSK 783
Query: 451 ----YFAFVSALSSVSIPKTV---HEALSH-------QEWKQAMIDEMVALESNHTWEL- 495
A V A+ S+ +T EA+++ +++ +A E+ L TW+
Sbjct: 784 KRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTD 843
Query: 496 -------VSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPV 548
+ P K ++ +FN K DG KAR VA G Q + DT+
Sbjct: 844 KYYDRKEIDP---KRVINSMFIFNRK--RDGTH---KARFVARGDIQ-----HPDTYDSG 890
Query: 549 AKMTSVRLFIAMTAMK-----R*PLFQLDIKNAFLHGDLEEEIYMEQP 591
+ +V + MT++ + QLDI +A+L+ D++EE+Y+ P
Sbjct: 891 MQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPP 938
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 91.3 bits (225), Expect = 1e-17
Identities = 97/409 (23%), Positives = 162/409 (38%), Gaps = 30/409 (7%)
Query: 37 IHRRLGHPSFDKLKVLVPQ--LSHLKSLD----------CESCQLGK-----HVRASFPS 79
IHR L H + ++ + +++ D C C +GK H++ S
Sbjct: 598 IHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLK 657
Query: 80 SPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQ--LFGAF 137
N S PF +H+D++GP + Y+++F D ++ W+ L DR + + F
Sbjct: 658 YQN--SYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVF 715
Query: 138 LTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKH 197
T + IKNQF + +++ D EY + F+ GI + + +GVAER +
Sbjct: 716 TTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLN 775
Query: 198 CHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQL 257
L+D RT L + P W AI + + N + S Q L L
Sbjct: 776 RTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLA--GLDISTL 833
Query: 258 RVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDT 317
+G V+D P K+ R + L SR GY Y PS ++ + + +
Sbjct: 834 LPFGQPVIVNDHNP-NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGK 892
Query: 318 PFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIY--ERR 375
+ T D + I + + ++S+ +F+ ++ + R
Sbjct: 893 ESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQESNDLNIESDHDFQSDIELHPEQPR 952
Query: 376 HVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPP--EPSNDLP 422
+V + SP DS + P T T DS + I +P V P SN LP
Sbjct: 953 NVLSKAVSPTDS--TPPSTHTEDSKRVSKTNIRAPREVDPNISESNILP 999
Score = 35.8 bits (81), Expect = 0.57
Identities = 29/95 (30%), Positives = 47/95 (48%), Gaps = 15/95 (15%)
Query: 502 KSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMT 561
K ++ +FN K DG KAR VA G Q + DT+ + +V + MT
Sbjct: 1281 KRVINSMFIFNKK--RDGTH---KARFVARGDIQ-----HPDTYDTGMQSNTVHHYALMT 1330
Query: 562 AMK-----R*PLFQLDIKNAFLHGDLEEEIYMEQP 591
++ + QLDI +A+L+ D++EE+Y+ P
Sbjct: 1331 SLSLALDNNYYITQLDISSAYLYADIKEELYIRPP 1365
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 90.9 bits (224), Expect = 1e-17
Identities = 97/409 (23%), Positives = 161/409 (38%), Gaps = 30/409 (7%)
Query: 37 IHRRLGHPSFDKLKVLVPQ--LSHLKSLD----------CESCQLGK-----HVRASFPS 79
IHR L H + ++ + +++ D C C +GK H++ S
Sbjct: 171 IHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLK 230
Query: 80 SPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQ--LFGAF 137
N S PF +H+D++GP + Y+++F D ++ W+ L DR + + F
Sbjct: 231 YQN--SYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVF 288
Query: 138 LTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKH 197
T + IKNQF + +++ D EY + F+ GI + + +GVAER +
Sbjct: 289 TTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLN 348
Query: 198 CHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQL 257
L+D RT L + P W AI + + N + S Q L L
Sbjct: 349 RTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLA--GLDISTL 406
Query: 258 RVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDT 317
+G V+D P K+ R + L SR GY Y PS ++ + + +
Sbjct: 407 LPFGQPVIVNDHNP-NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGK 465
Query: 318 PFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIY--ERR 375
+ T D + I + ++S+ +F+ ++ + R
Sbjct: 466 ESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPR 525
Query: 376 HVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPP--EPSNDLP 422
+V + SP DS + P T T DS + I +P V P SN LP
Sbjct: 526 NVLSKAVSPTDS--TPPSTHTEDSKRVSKTNIRAPREVDPNISESNILP 572
Score = 38.5 bits (88), Expect = 0.087
Identities = 24/72 (33%), Positives = 39/72 (53%), Gaps = 10/72 (13%)
Query: 525 KARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMK-----R*PLFQLDIKNAFLH 579
KAR VA G Q + DT+ P + +V + MT++ + QLDI +A+L+
Sbjct: 872 KARFVARGDIQ-----HPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLY 926
Query: 580 GDLEEEIYMEQP 591
D++EE+Y+ P
Sbjct: 927 ADIKEELYIRPP 938
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 90.9 bits (224), Expect = 1e-17
Identities = 97/409 (23%), Positives = 161/409 (38%), Gaps = 30/409 (7%)
Query: 37 IHRRLGHPSFDKLKVLVPQ--LSHLKSLD----------CESCQLGK-----HVRASFPS 79
IHR L H + ++ + +++ D C C +GK H++ S
Sbjct: 171 IHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLK 230
Query: 80 SPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQ--LFGAF 137
N S PF +H+D++GP + Y+++F D ++ W+ L DR + + F
Sbjct: 231 YQN--SYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVF 288
Query: 138 LTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKH 197
T + IKNQF + +++ D EY + F+ GI + + +GVAER +
Sbjct: 289 TTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLN 348
Query: 198 CHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQL 257
L+D RT L + P W AI + + N + S Q L L
Sbjct: 349 RTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLA--GLDISTL 406
Query: 258 RVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDT 317
+G V+D P K+ R + L SR GY Y PS ++ + + +
Sbjct: 407 LPFGQPVIVNDHNP-NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGK 465
Query: 318 PFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIY--ERR 375
+ T D + I + ++S+ +F+ ++ + R
Sbjct: 466 ESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPR 525
Query: 376 HVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPP--EPSNDLP 422
+V + SP DS + P T T DS + I +P V P SN LP
Sbjct: 526 NVLSKAVSPTDS--TPPSTHTEDSKRVSKTNIRAPREVDPNISESNILP 572
Score = 35.4 bits (80), Expect = 0.74
Identities = 23/72 (31%), Positives = 38/72 (51%), Gaps = 10/72 (13%)
Query: 525 KARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMK-----R*PLFQLDIKNAFLH 579
KAR VA G Q + DT+ + +V + MT++ + QLDI +A+L+
Sbjct: 872 KARFVARGDIQ-----HPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLY 926
Query: 580 GDLEEEIYMEQP 591
D++EE+Y+ P
Sbjct: 927 ADIKEELYIRPP 938
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 90.9 bits (224), Expect = 1e-17
Identities = 97/409 (23%), Positives = 161/409 (38%), Gaps = 30/409 (7%)
Query: 37 IHRRLGHPSFDKLKVLVPQ--LSHLKSLD----------CESCQLGK-----HVRASFPS 79
IHR L H + ++ + +++ D C C +GK H++ S
Sbjct: 171 IHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQCPDCLIGKSTKHRHIKGSRLK 230
Query: 80 SPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQ--LFGAF 137
N S PF +H+D++GP + Y+++F D ++ W+ L DR + + F
Sbjct: 231 YQN--SYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVF 288
Query: 138 LTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKH 197
T + IKNQF + +++ D EY + F+ GI + + +GVAER +
Sbjct: 289 TTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLN 348
Query: 198 CHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQL 257
L+D RT L + P W AI + + N + S Q L L
Sbjct: 349 RTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLA--GLDISTL 406
Query: 258 RVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDT 317
+G V+D P K+ R + L SR GY Y PS ++ + + +
Sbjct: 407 LPFGQPVIVNDHNP-NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGK 465
Query: 318 PFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIY--ERR 375
+ T D + I + ++S+ +F+ ++ + R
Sbjct: 466 ESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPR 525
Query: 376 HVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPP--EPSNDLP 422
+V + SP DS + P T T DS + I +P V P SN LP
Sbjct: 526 NVLSKAVSPTDS--TPPSTHTEDSKRVSKTNIRAPREVDPNISESNILP 572
Score = 35.8 bits (81), Expect = 0.57
Identities = 29/95 (30%), Positives = 47/95 (48%), Gaps = 15/95 (15%)
Query: 502 KSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMT 561
K ++ +FN K DG KAR VA G Q + DT+ + +V + MT
Sbjct: 854 KRVINSMFIFNKK--RDGTH---KARFVARGDIQ-----HPDTYDSGMQSNTVHHYALMT 903
Query: 562 AMK-----R*PLFQLDIKNAFLHGDLEEEIYMEQP 591
++ + QLDI +A+L+ D++EE+Y+ P
Sbjct: 904 SLSLALDNNYYITQLDISSAYLYADIKEELYIRPP 938
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 90.9 bits (224), Expect = 1e-17
Identities = 97/409 (23%), Positives = 161/409 (38%), Gaps = 30/409 (7%)
Query: 37 IHRRLGHPSFDKLKVLVPQ--LSHLKSLD----------CESCQLGK-----HVRASFPS 79
IHR L H + ++ + +++ D C C +GK H++ S
Sbjct: 598 IHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLK 657
Query: 80 SPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQ--LFGAF 137
N S PF +H+D++GP + Y+++F D ++ W+ L DR + + F
Sbjct: 658 YQN--SYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVF 715
Query: 138 LTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKH 197
T + IKNQF + +++ D EY + F+ GI + + +GVAER +
Sbjct: 716 TTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLN 775
Query: 198 CHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQL 257
L+D RT L + P W AI + + N + S Q L L
Sbjct: 776 RTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLA--GLDISTL 833
Query: 258 RVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDT 317
+G V+D P K+ R + L SR GY Y PS ++ + + +
Sbjct: 834 LPFGQPVIVNDHNP-NSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGK 892
Query: 318 PFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIY--ERR 375
+ T D + I + ++S+ +F+ ++ + R
Sbjct: 893 ESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDFQSDIELHPEQPR 952
Query: 376 HVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVPP--EPSNDLP 422
+V + SP DS + P T T DS + I +P V P SN LP
Sbjct: 953 NVLSKAVSPTDS--TPPSTHTEDSKRVSKTNIRAPREVDPNISESNILP 999
Score = 35.8 bits (81), Expect = 0.57
Identities = 29/95 (30%), Positives = 47/95 (48%), Gaps = 15/95 (15%)
Query: 502 KSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMT 561
K ++ +FN K DG KAR VA G Q + DT+ + +V + MT
Sbjct: 1281 KRVINSMFIFNKK--RDGTH---KARFVARGDIQ-----HPDTYDSGMQSNTVHHYALMT 1330
Query: 562 AMK-----R*PLFQLDIKNAFLHGDLEEEIYMEQP 591
++ + QLDI +A+L+ D++EE+Y+ P
Sbjct: 1331 SLSLALDNNYYITQLDISSAYLYADIKEELYIRPP 1365
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 84.0 bits (206), Expect = 2e-15
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 445 HRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSI 504
++L+P Y ++ PK+V AL W QAM +E+ AL N TW LV P ++I
Sbjct: 10 NKLNPKYSLTITTTIKKE-PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68
Query: 505 VGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFI 558
+GC+ VF K+ DG +DRLKARLVA G+ Q G + +T+SPV + ++R +
Sbjct: 69 LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 55.1 bits (131), Expect = 9e-07
Identities = 47/207 (22%), Positives = 85/207 (40%), Gaps = 14/207 (6%)
Query: 38 HRRLGHPSFDKLKVLVPQLSHLKSLD---------CESCQLGKHVRAS-FPSSPNKRSKS 87
H+R+GH +++ + + +SLD C++C++ K + + + S N S
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 88 --PFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSR--CTWIILLKDRSQLFGAFLTFCSE 143
P D++GP + RY + +D +R T K+ +
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 144 IKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDT 203
++ QF + +R + SD E+ + S GI H + NG AER ++
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 204 TRTLLINAHAPFKFWGDAILTACYLIN 230
TLL ++ KFW A+ +A + N
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRN 768
Score = 37.0 bits (84), Expect = 0.25
Identities = 43/154 (27%), Positives = 69/154 (43%), Gaps = 30/154 (19%)
Query: 458 LSSVSIPKT----VHEALSHQ-------EWKQAMIDEMVALESNHTWELV-----SPSPG 501
+ +VS PK +EA+S E+KQA E+ L+ +++ S P
Sbjct: 1260 METVSAPKIRAIYYNEAISKNPDLKEKHEYKQAYHKELQNLKDMKVFDVDVKYSRSEIPD 1319
Query: 502 KSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMT----SVRLF 557
IV +F K + KAR+V G TQ DT+S + + +++F
Sbjct: 1320 NLIVPTNTIFTKK-----RNGIYKARIVCRGDTQS-----PDTYSVITTESLNHNHIKIF 1369
Query: 558 IAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQP 591
+ + + + LDI +AFL+ LEEEIY+ P
Sbjct: 1370 LMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHP 1403
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 43.1 bits (100), Expect = 0.004
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 200 LVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRV 259
+++ R++L P F DA TA ++IN+ PS+ ++ +P + F P Y LR
Sbjct: 5 IIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYS-YLRR 63
Query: 260 YGSTCFVHDLTPGRDKLSARAVK 282
+G ++H KL RA K
Sbjct: 64 FGCVAYIH---CDEGKLKPRAKK 83
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 42.7 bits (99), Expect = 0.005
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 38 HRRLGHPSFDKLKVLVPQ----LSHLKSLD-CESCQLGKHVRASFPSSPNKRSKSPFDIV 92
H RL H S +++LV + S + SL CE C GK R +F S+ +K+P D V
Sbjct: 73 HSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNF-STGQHTTKNPLDYV 131
Query: 93 HSDVWGPSRV 102
HSD+WG V
Sbjct: 132 HSDLWGAPSV 141
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 41.6 bits (96), Expect = 0.010
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 42 GHPSFDKLKVLVPQLSHLKSLD---------CESCQLGKHVRASFPSSPNKRSKSPFDIV 92
GHP ++K + LD C +CQ + P +P ++P+ +
Sbjct: 793 GHPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNCQENSKMPRVVPLNPWPVPEAPWKRI 852
Query: 93 HSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGI 152
H D GP L Y + +D ++ + L + S + + EI + G
Sbjct: 853 HIDFAGP------LNGCYLLVVVDAKTKYAEVKLTRSISAV--TTIDLLEEIFSIHGYPE 904
Query: 153 RILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTR 205
I+ SDN + F S GI H++S + P+ NG AER VDT +
Sbjct: 905 TII-SDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAER----FVDTLK 952
>POL_IPMA (P11368) Putative Pol polyprotein [Contains: Integrase
(IN); Reverse transcriptase/ribonuclease H (EC 2.7.7.49)
(EC 3.1.26.4) (RT)]
Length = 867
Score = 41.6 bits (96), Expect = 0.010
Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Query: 141 CSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHL 200
C E + +GK R+L++DN Y F F + + H + P+ PQ G+ ER H
Sbjct: 695 CLEAWSAWGKP-RLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAH--- 750
Query: 201 VDTTRTLLI 209
T +T LI
Sbjct: 751 -RTLKTYLI 758
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 41.6 bits (96), Expect = 0.010
Identities = 49/189 (25%), Positives = 73/189 (37%), Gaps = 13/189 (6%)
Query: 64 CESCQL-GKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCT 122
C+ C + +AS P R + PFD D GP + + G Y + +DG + T
Sbjct: 650 CQQCLITNASNKASGPILRPDRPQKPFDKFFIDYIGP--LPPSQGYLYVLVVVDGMTGFT 707
Query: 123 WIILLKDRSQLFGA-FLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQS 181
W+ K S L + I +++ SD + + F + GI +
Sbjct: 708 WLYPTKAPSTSATVKSLNVLTSIAIP-----KVIHSDQGAAFTSSTFAEWAKERGIHLEF 762
Query: 182 SCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNEI 241
S P+ PQ ERK+ + LL+ P K W D + +N S VL
Sbjct: 763 STPYHPQSGSKVERKNSDIKRLLTKLLVG--RPTK-WYDLLPVVQLALNNTYSPVL-KYT 818
Query: 242 PQSLLFPKD 250
P LLF D
Sbjct: 819 PHQLLFGID 827
>POL_IPMAI (P12894) Probable Pol polyprotein [Contains: Integrase
(IN); Reverse transcriptase/ribonuclease H (EC 2.7.7.49)
(EC 3.1.26.4) (RT)]
Length = 814
Score = 41.2 bits (95), Expect = 0.013
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 141 CSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKH 197
C E + +GK R+L++DN Y F F + + H + P+ PQ G+ ER H
Sbjct: 613 CLEAWSAWGKP-RLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAH 668
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6)
Length = 1887
Score = 39.7 bits (91), Expect = 0.039
Identities = 48/183 (26%), Positives = 63/183 (34%), Gaps = 19/183 (10%)
Query: 288 YSRTQKGYRCYSPS-TRRFYISADVTFFEDTPFFASPTTTSSTTDVTDSQVIPTPLFH-- 344
YS T Y SP Y + + +P +ASP S+T + +P
Sbjct: 1579 YSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGY 1638
Query: 345 ----PIFEPPVSTQSSPQLQ-SNPEFRRYGNIYERRHVEAPETSPIDS------SDSAPK 393
P++ P V QSSP S GN Y SP S S S+P
Sbjct: 1639 SPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPS 1698
Query: 394 TVTTDSSDSATAPISSP-----VVVPPEPSNDLPIALHKGKRSTANPHPVYNFLSYHRLS 448
T S T+P SP V P S P + S A+P + Y S
Sbjct: 1699 YSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTS 1758
Query: 449 PSY 451
P+Y
Sbjct: 1759 PTY 1761
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia
protein 2 (ALL1-related protein)
Length = 5262
Score = 39.7 bits (91), Expect = 0.039
Identities = 38/138 (27%), Positives = 58/138 (41%), Gaps = 10/138 (7%)
Query: 314 FEDTPFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYE 373
FE++P P ++ S++ P P P+ PP + SP PE R +E
Sbjct: 549 FEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPP----PEASRLFPPFE 604
Query: 374 RRHVE-APETSPIDSSDSAPK-TVTTDSSDSATAPISSPVVVPPEPSNDLPIALHKGKRS 431
+ PE SP+ A + + + S + P SP+ PPE S P+ + S
Sbjct: 605 ESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPV----VS 660
Query: 432 TANPHPVYNFLSYHRLSP 449
+P P + LS LSP
Sbjct: 661 RLSPPPEESPLSPPALSP 678
Score = 36.6 bits (83), Expect = 0.33
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 337 VIPTPLFHPIFEPPVSTQSSP-----QLQSNPEFRRYGNIYERRHV-----EAPETSPID 386
++P P P+ PP + +SP +L PE + E H+ E+P + P +
Sbjct: 440 LLPPPEESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLSPPPE 499
Query: 387 SSDSAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPIA 424
S +P ++ S +P+S P PP P+ + P++
Sbjct: 500 ESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPLS 537
>IGEB_MOUSE (P03975) IgE-binding protein
Length = 557
Score = 38.9 bits (89), Expect = 0.067
Identities = 15/45 (33%), Positives = 23/45 (50%)
Query: 153 RILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKH 197
R+L++DN Y F F + + H + P+ PQ G+ ER H
Sbjct: 436 RLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAH 480
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.339 0.146 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,221,715
Number of Sequences: 164201
Number of extensions: 4315150
Number of successful extensions: 16185
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 15674
Number of HSP's gapped (non-prelim): 366
length of query: 965
length of database: 59,974,054
effective HSP length: 120
effective length of query: 845
effective length of database: 40,269,934
effective search space: 34028094230
effective search space used: 34028094230
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 71 (32.0 bits)
Medicago: description of AC145449.7