BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145330.19 - phase: 0 /pseudo
(469 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TT12_ARATH (Q9LYT3) TRANSPARENT TESTA 12 protein 187 7e-47
NORM_VIBCH (Q9KRU4) Probable multidrug resistance protein norM (... 77 1e-13
YAO6_SCHPO (Q10085) Hypothetical protein C11D3.06 in chromosome I 74 8e-13
NORM_PASMU (Q9CMZ9) Probable multidrug resistance protein norM (... 70 1e-11
NORM_ECOLI (P37340) Multidrug resistance protein norM (Na(+)/dru... 69 2e-11
NORM_ECOL6 (Q8FH68) Multidrug resistance protein norM (Na(+)/dru... 69 2e-11
NORM_ECO57 (P58164) Multidrug resistance protein norM (Na(+)/dru... 69 2e-11
YD38_YEAST (Q05497) Hypothetical 77.8 kDa protein in MRPS28-HXT7... 69 3e-11
NORM_VIBVU (Q8D9N8) Probable multidrug resistance protein norM (... 67 8e-11
NORM_VIBPA (O82855) Multidrug resistance protein norM (Na(+)/dru... 67 1e-10
NORM_HAEIN (P45272) Probable multidrug resistance protein norM (... 67 1e-10
NORM_SALTY (Q8ZPP2) Multidrug resistance protein norM (Na(+)/dru... 67 1e-10
NORM_SALTI (Q8Z6N7) Multidrug resistance protein norM (Na(+)/dru... 67 1e-10
NOM1_PSEAE (Q9I3Y3) Probable multidrug resistance protein norM 1... 59 3e-08
NORM_BUCBP (Q89AX2) Multidrug resistance protein norM (Na(+)/dru... 55 3e-07
NOM2_PSEAE (Q9HTR0) Probable multidrug resistance protein norM 2... 51 6e-06
NORM_DEIRA (Q9RY44) Probable multidrug resistance protein norM (... 50 1e-05
NORM_BACSU (O31855) Probable multidrug resistance protein norM (... 50 1e-05
NORM_XYLFA (Q9PA34) Probable multidrug resistance protein norM (... 49 3e-05
NORM_XYLFT (Q879Z5) Probable multidrug resistance protein norM (... 49 4e-05
>TT12_ARATH (Q9LYT3) TRANSPARENT TESTA 12 protein
Length = 507
Score = 187 bits (474), Expect = 7e-47
Identities = 92/181 (50%), Positives = 125/181 (68%)
Query: 270 NVVSICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFL 329
+ +SIC+ W+M LG AA SVRVSNELG G+ + A S+VV +T++ I S L +
Sbjct: 312 DAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCV 371
Query: 330 FFLFFRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVN 389
L FR L+ FTS+ EV AAV +L PLL++SI LN +QP+LSGVAIG+GWQ+ VAYVN
Sbjct: 372 IVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVN 431
Query: 390 IGCYYIIGIPVGIVLGNIIHWQVKGIWMGMLFGTLIQTIVLLIITYKTNWDEQVTVARKR 449
+ YY+IG+P+G VLG V GIW GM+ G ++QT+ L+++T KTNW +V A +R
Sbjct: 432 LVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQR 491
Query: 450 V 450
V
Sbjct: 492 V 492
Score = 37.0 bits (84), Expect = 0.11
Identities = 17/60 (28%), Positives = 33/60 (54%), Gaps = 1/60 (1%)
Query: 29 VWNETKLMWVVAAPAIFTRFSTFGIQIISQAFVGHIGSRELAAFALVFTVLIRFANGILM 88
VW E+KL+W ++ +I + + ++ F GH+GS +LA ++ + A GI++
Sbjct: 49 VW-ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIML 107
>NORM_VIBCH (Q9KRU4) Probable multidrug resistance protein norM
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 461
Score = 77.0 bits (188), Expect = 1e-13
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 10/184 (5%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
+ LN + M + AA S+RV ++LG+ K A + V ++T LA L +
Sbjct: 279 VALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVL 338
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
FRE++A ++T N+ V A +L +I +++VQ V +G G + + + Y
Sbjct: 339 FREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISY 398
Query: 394 YIIGIPVGIVLGNIIHW------QVKGIWMGMLFGTLIQTIVL---LIITYKTNWDEQVT 444
+++G+P G +LG + +W KG W+G + G ++L L K + D Q+
Sbjct: 399 WVLGLPTGYILG-MTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQSDDVQLH 457
Query: 445 VARK 448
+A K
Sbjct: 458 LAAK 461
>YAO6_SCHPO (Q10085) Hypothetical protein C11D3.06 in chromosome I
Length = 455
Score = 73.9 bits (180), Expect = 8e-13
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 285 ISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLFFRERLAYIFTS 344
I G S RV+ LG G A + V + +A+GS + + + R IFT+
Sbjct: 280 IPFGLGIITSNRVAYYLGAGLPDNASLTAKVAAIVGVAVGSVIMITMIAVRNIYGRIFTN 339
Query: 345 NKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCYYIIGIPVGIVL 404
+ +V V + PL++ + +S+ + G G G Q A VNI YY+ +P+GI L
Sbjct: 340 DPDVIQLVALVMPLVAAFQISDSLNGTMGGALRGTGRQKVGAIVNITAYYLFALPLGIYL 399
Query: 405 GNIIHWQ-VKGIWMGMLFGTLIQTIVLLIITYKTNWDEQVTVARKRVNRW 453
H + + G+W+G + I I+ L I T+W ++ +RK ++R+
Sbjct: 400 A--FHGKGLVGLWIGQVIALSIVGILELKIVMATDW---ISQSRKAISRF 444
>NORM_PASMU (Q9CMZ9) Probable multidrug resistance protein norM
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 464
Score = 70.1 bits (170), Expect = 1e-11
Identities = 42/163 (25%), Positives = 76/163 (45%), Gaps = 4/163 (2%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
I LN + + M+ + AA++ V LG+G+A AK ++ L I +
Sbjct: 281 IALNTSSFLFMLPMSLGMAATILVGQRLGEGAADKAKQVSYSALIVGLLIAVITATLTVI 340
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
FR +A IF +++V A G L + ++ ++VQ V G G + Y+ + CY
Sbjct: 341 FRVEIAEIFVKDRDVIAMAGTLLLIAALYQFSDTVQVVAGGALRGYKDTKAILYITLFCY 400
Query: 394 YIIGIPVGIVLGN----IIHWQVKGIWMGMLFGTLIQTIVLLI 432
+++G+P+G L + +G W+G + I +L+I
Sbjct: 401 WVVGMPMGYTLARTDLLMPALGAEGFWIGFVVSLTIAATLLMI 443
>NORM_ECOLI (P37340) Multidrug resistance protein norM (Na(+)/drug
antiporter) (Multidrug-efflux transporter)
Length = 457
Score = 69.3 bits (168), Expect = 2e-11
Identities = 37/163 (22%), Positives = 79/163 (47%), Gaps = 4/163 (2%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
I LN + ++ + AA ++RV LG+GS A+ + ++ + + + +F +
Sbjct: 276 IALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVS 335
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
RE++A ++ N EV L L ++ + +S+Q + SG+ G ++ Y+ Y
Sbjct: 336 LREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAY 395
Query: 394 YIIGIPVGIVLG----NIIHWQVKGIWMGMLFGTLIQTIVLLI 432
+++G+P G +L + G W+G + G I++++
Sbjct: 396 WVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMML 438
>NORM_ECOL6 (Q8FH68) Multidrug resistance protein norM (Na(+)/drug
antiporter) (Multidrug-efflux transporter)
Length = 457
Score = 69.3 bits (168), Expect = 2e-11
Identities = 37/163 (22%), Positives = 79/163 (47%), Gaps = 4/163 (2%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
I LN + ++ + AA ++RV LG+GS A+ + ++ + + + +F +
Sbjct: 276 IALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVS 335
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
RE++A ++ N EV L L ++ + +S+Q + SG+ G ++ Y+ Y
Sbjct: 336 LREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAY 395
Query: 394 YIIGIPVGIVLG----NIIHWQVKGIWMGMLFGTLIQTIVLLI 432
+++G+P G +L + G W+G + G I++++
Sbjct: 396 WVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMML 438
>NORM_ECO57 (P58164) Multidrug resistance protein norM (Na(+)/drug
antiporter) (Multidrug-efflux transporter)
Length = 457
Score = 69.3 bits (168), Expect = 2e-11
Identities = 37/163 (22%), Positives = 79/163 (47%), Gaps = 4/163 (2%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
I LN + ++ + AA ++RV LG+GS A+ + ++ + + + +F +
Sbjct: 276 IALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVS 335
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
RE++A ++ N EV L L ++ + +S+Q + SG+ G ++ Y+ Y
Sbjct: 336 LREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAY 395
Query: 394 YIIGIPVGIVLG----NIIHWQVKGIWMGMLFGTLIQTIVLLI 432
+++G+P G +L + G W+G + G I++++
Sbjct: 396 WVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMML 438
>YD38_YEAST (Q05497) Hypothetical 77.8 kDa protein in MRPS28-HXT7
intergenic region
Length = 695
Score = 68.6 bits (166), Expect = 3e-11
Identities = 43/163 (26%), Positives = 75/163 (45%)
Query: 284 MISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLFFRERLAYIFT 343
MI + S R++N +G A S V + S G +F R +A I++
Sbjct: 501 MIPFAIGISTSTRIANFIGAKRTDFAHISSQVGLSFSFIAGFINCCILVFGRNLIANIYS 560
Query: 344 SNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCYYIIGIPVGIV 403
+ EV + ++ PL+ I +S+ V G G QS + VN+ YY+ GIP+ ++
Sbjct: 561 KDPEVIKLIAQVLPLVGIVQNFDSLNAVAGSCLRGQGMQSLGSIVNLMAYYLFGIPLALI 620
Query: 404 LGNIIHWQVKGIWMGMLFGTLIQTIVLLIITYKTNWDEQVTVA 446
L ++ G+W+G+ L+ +V +WD+ +T A
Sbjct: 621 LSWFFDMKLYGLWIGIGSAMLLIGLVEAYYVLFPDWDKIMTYA 663
>NORM_VIBVU (Q8D9N8) Probable multidrug resistance protein norM
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 483
Score = 67.4 bits (163), Expect = 8e-11
Identities = 40/154 (25%), Positives = 75/154 (47%), Gaps = 6/154 (3%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
+ +N + M+ + AA S+RV + LG+ S + A+ + V +L L+ F L +
Sbjct: 302 VAINFSSLVFMLPMSIGAATSIRVGHMLGEKSTEGARIASHVGILVGLSTAVFTALLTVI 361
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
RE++A ++T N+ V +L +I +++Q + +G G + Y
Sbjct: 362 LREQIALLYTDNRVVITLAMQLLIFTAIYQCTDAIQVIAAGALRGYKDMRAIFNRTFIAY 421
Query: 394 YIIGIPVGIVLGNIIHWQV-----KGIWMGMLFG 422
+++G+P G VLG + W V +G W+G + G
Sbjct: 422 WLLGLPTGYVLG-LTDWIVEPMGAQGFWIGFIVG 454
>NORM_VIBPA (O82855) Multidrug resistance protein norM (Na(+)/drug
antiporter) (Multidrug-efflux transporter)
Length = 456
Score = 67.0 bits (162), Expect = 1e-10
Identities = 41/171 (23%), Positives = 81/171 (46%), Gaps = 9/171 (5%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
+ +N + M+ + AA S+RV + LG+ + A+ + V ++ LA+ + + +
Sbjct: 275 VAINFSSLVFMLPMSVGAAVSIRVGHRLGEENVDGARVASRVGIMVGLALATITAIITVL 334
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
RE +A ++T+N EV + +L ++ ++VQ + +G G + Y
Sbjct: 335 SRELIAELYTNNPEVISLAMQLLLFAAVYQCTDAVQVIAAGALRGYKDMRAIFNRTFIAY 394
Query: 394 YIIGIPVGIVLGNIIHWQV-----KGIWMGMLFGTLIQTIVLLIITYKTNW 439
+I+G+P G +LG W V +G W+G + G T L++ + W
Sbjct: 395 WILGLPTGYILGR-TDWIVEPMGAQGFWLGFIIGL---TAAALMLGVRLRW 441
>NORM_HAEIN (P45272) Probable multidrug resistance protein norM
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 464
Score = 67.0 bits (162), Expect = 1e-10
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 4/161 (2%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
I LN + + M + A ++ V LG GS + AK +L L + L +F
Sbjct: 281 ITLNTSSFIFMFPMSIGMATTILVGQALGAGSPQNAKKIGYAALLLGLTVTIVTALITIF 340
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
FR +A IF +++ V A L ++ +++Q V+ G+ G + Y+ + Y
Sbjct: 341 FRYEIASIFVTDEIVIAMAANLLLFAALYQFSDTIQMVVGGILRGYKDTKVILYITLFSY 400
Query: 394 YIIGIPVGIVLGN----IIHWQVKGIWMGMLFGTLIQTIVL 430
++IG+P+G LG + H KG W+ + +L
Sbjct: 401 WVIGVPLGYTLGRTDWLVPHIDAKGFWIAFVVSLTFAAFLL 441
>NORM_SALTY (Q8ZPP2) Multidrug resistance protein norM (Na(+)/drug
antiporter) (Multidrug-efflux transporter)
Length = 457
Score = 66.6 bits (161), Expect = 1e-10
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 4/163 (2%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
I LN + ++ + AA ++RV LG+GS A+ + + + + +F +
Sbjct: 276 IALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGICMAVVTAIFTVT 335
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
R+ +A ++ N EV A +L L ++ + +S+Q + SG+ G ++ ++ Y
Sbjct: 336 LRKHIALLYNDNPEVVALAAQLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFFITFTAY 395
Query: 394 YIIGIPVGIVLG----NIIHWQVKGIWMGMLFGTLIQTIVLLI 432
+++G+P G +L + G WMG + G +++++
Sbjct: 396 WVLGLPSGYILALTDLVVDRMGPAGFWMGFIIGLTSAAVLMML 438
>NORM_SALTI (Q8Z6N7) Multidrug resistance protein norM (Na(+)/drug
antiporter) (Multidrug-efflux transporter)
Length = 457
Score = 66.6 bits (161), Expect = 1e-10
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 4/163 (2%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
I LN + ++ + AA ++RV LG+GS A+ + + + + +F +
Sbjct: 276 IALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGICMAVVTAIFTVT 335
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
R+ +A ++ N EV A +L L ++ + +S+Q + SG+ G ++ ++ Y
Sbjct: 336 LRKHIALLYNDNPEVVALAAQLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFFITFTAY 395
Query: 394 YIIGIPVGIVLG----NIIHWQVKGIWMGMLFGTLIQTIVLLI 432
+++G+P G +L + G WMG + G +++++
Sbjct: 396 WVLGLPSGYILALTDLVVDRMGPAGFWMGFIIGLTSAAVLMML 438
>NOM1_PSEAE (Q9I3Y3) Probable multidrug resistance protein norM 1
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 477
Score = 58.9 bits (141), Expect = 3e-08
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 15/205 (7%)
Query: 270 NVVS---ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSF 326
NVV+ I LN + MI A +VRV + LG G + A+F+ V + +L
Sbjct: 279 NVVAGHQIALNFSALVFMIPYSLGMAVTVRVGHNLGAGLPRDARFAAGVGMAAALGYACV 338
Query: 327 LFLFFLFFRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVA 386
L RE++A +++ + V A L ++ +++Q +G G
Sbjct: 339 SASLMLLLREQIAAMYSPDPAVIAIAASLIVFSALFQFSDALQVTAAGALRGYQDTRVTM 398
Query: 387 YVNIGCYYIIGIPVGIVLGNIIHWQ----VKGIWMGMLFGTLIQTIVLLIITYKTNWDEQ 442
+ + Y+ IG+PVG LG +Q +G+W G++ G I+L I ++
Sbjct: 399 IMTLFAYWGIGLPVGYSLGLTDWFQEPTGPRGLWQGLVVGLTGAAIMLCIRLARS----- 453
Query: 443 VTVARKRVNRWSKVESTDQETKTKL 467
AR+ + + +++ D E + L
Sbjct: 454 ---ARRFIRQHERLQREDAEAASVL 475
>NORM_BUCBP (Q89AX2) Multidrug resistance protein norM (Na(+)/drug
antiporter) (Multidrug-efflux transporter)
Length = 451
Score = 55.5 bits (132), Expect = 3e-07
Identities = 38/166 (22%), Positives = 74/166 (43%), Gaps = 4/166 (2%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLF 333
I LNI+ ++ L AAS+R+ LGK S I+ + + L I + + F +
Sbjct: 281 IALNISSTIFILPLSIATAASIRLGFYLGKKSFSKISTIILSSQIIGLIISTTISTFIIL 340
Query: 334 FRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCY 393
F ++ ++T N + ++ + + + + Q + +G+ + + + Y
Sbjct: 341 FHYQIITLYTKNANIIKLTKQMLFITASYQIFDFFQIIGNGILRSYKDTNIIFIITCTSY 400
Query: 394 YIIGIPVG--IVLGNII--HWQVKGIWMGMLFGTLIQTIVLLIITY 435
+I+G P G + L N I H G W G+L + +I++L Y
Sbjct: 401 WIVGFPFGYFLALTNYIVPHMGAIGFWYGILIALITSSIMILFRIY 446
>NOM2_PSEAE (Q9HTR0) Probable multidrug resistance protein norM 2
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 488
Score = 51.2 bits (121), Expect = 6e-06
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 8/161 (4%)
Query: 284 MISLGFMAAASVRVSNELGKGSAKAAKFSIVVTV-LTSLAIGSFLFLFFLFFRERLAYIF 342
M+ +G A + R+ G G A+ + V + +L + F LF+ + E + +F
Sbjct: 286 MVPVGLSYATTYRIGQHFGAGRLLEARRAGRVGIGFGALCMLLFAGLFW-WMPEAIIGLF 344
Query: 343 T-----SNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCYYIIG 397
+N+EVAA L + + L + Q V G G T V + CY+++G
Sbjct: 345 LDRDAPANREVAAMAVSLLAIAAWFELFDGTQNVAMGAIRGLKDARTTFLVGLACYWLVG 404
Query: 398 IPVGIVLGNIIHWQVKGIWMGMLFGTLIQTIVL-LIITYKT 437
+P+ +L W G+W G+ G I L L +KT
Sbjct: 405 VPLACLLAFAAGWGAAGVWWGLAGGLACAAIGLTLAFEWKT 445
>NORM_DEIRA (Q9RY44) Probable multidrug resistance protein norM
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 451
Score = 50.4 bits (119), Expect = 1e-05
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 7/154 (4%)
Query: 284 MISLGFMAAASVRVSNELGKGS-AKAAKFSIVVTVLTSLAIGSFLFLFFLFFRERLAYIF 342
M+ LG +A VRV E G G A+A + +V L+S + +F + R +
Sbjct: 286 MVPLGIASATGVRVGTEAGAGRLAQARRAGLVGLGLSSAVMLTFAVIELAAPRTVFSVFV 345
Query: 343 TSNKE-----VAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVNIGCYYIIG 397
N +AAA G LS + ++ L++ +Q +G G V++ Y+++G
Sbjct: 346 NVNDPANAGLIAAATGFLS-IAALFQLMDGLQVTANGALRGLQDTRVPLLVSLVAYWVVG 404
Query: 398 IPVGIVLGNIIHWQVKGIWMGMLFGTLIQTIVLL 431
+ +G VL ++ +G+W G+ G + + L+
Sbjct: 405 LGLGSVLSSVAGLGARGLWFGLTAGLTLAGLSLV 438
Score = 33.9 bits (76), Expect = 0.92
Identities = 18/71 (25%), Positives = 37/71 (51%), Gaps = 7/71 (9%)
Query: 32 ETKLMWVVAAPAIFTRFSTFGIQIISQAFVGHIGSRELAAFA-------LVFTVLIRFAN 84
E + + +A P + ++F+ + +I+ A +G +G RELAA A LVF +++
Sbjct: 14 ELRALLRLAGPVVVSQFAANALALIATAVIGRLGERELAAAAYANAAYYLVFIMVVGVML 73
Query: 85 GILMKIVVGNG 95
+ ++ +G
Sbjct: 74 SVAPRVAQAHG 84
>NORM_BACSU (O31855) Probable multidrug resistance protein norM
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 452
Score = 50.4 bits (119), Expect = 1e-05
Identities = 34/142 (23%), Positives = 64/142 (44%), Gaps = 6/142 (4%)
Query: 284 MISLGFMAAASVRVSNELGKGSAKAAKFSIVVTVLTSLAIGSFLFLFFLFFRERLAYIFT 343
M+ L A ++ V E G K A+ ++ ++ ++ F L FRE++A ++T
Sbjct: 289 MLPLSVSMALTIVVGFEAGAARFKDARSYSLIGIMMAIGFSLFTAACILLFREQIAGMYT 348
Query: 344 SNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIG---AGWQSTVAYVNIGCYYIIGIPV 400
S+ +V L ++V + G G + A+V+ Y++IG+PV
Sbjct: 349 SDPDVLRLTQHFLIYALFFQLSDAVAAPIQGALRGYKDVNYTLAAAFVS---YWVIGLPV 405
Query: 401 GIVLGNIIHWQVKGIWMGMLFG 422
G ++G G W+G++ G
Sbjct: 406 GYMVGTFTSLGAFGYWIGLIAG 427
>NORM_XYLFA (Q9PA34) Probable multidrug resistance protein norM
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 469
Score = 48.9 bits (115), Expect = 3e-05
Identities = 36/161 (22%), Positives = 73/161 (44%), Gaps = 8/161 (4%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSA----KAAKFSIVVTVLTSLAIGSFLFL 329
I L++ MI +G A +VR+ + +G+ + A + + T S L L
Sbjct: 297 IALSVAQLCFMIPMGVAEATTVRIGHAVGRCDLLVMRRVAWAGYAIVIGTQTLSASVLLL 356
Query: 330 FFLFFRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVN 389
+ + + +T + VA+ +L +I + +Q + SGV G +
Sbjct: 357 GY----DVIVAAYTDDLVVASLASKLLLFAAIFQFPDGLQMLSSGVLRGMKDTRVPMLLA 412
Query: 390 IGCYYIIGIPVGIVLGNIIHWQVKGIWMGMLFGTLIQTIVL 430
+ Y+ +G+P+G+ LG + W +G+W+G++ G ++L
Sbjct: 413 MISYWGLGMPLGLGLGFALEWNSRGMWIGLIIGLTAAAVLL 453
>NORM_XYLFT (Q879Z5) Probable multidrug resistance protein norM
(Na(+)/drug antiporter) (Multidrug-efflux transporter)
Length = 469
Score = 48.5 bits (114), Expect = 4e-05
Identities = 36/161 (22%), Positives = 73/161 (44%), Gaps = 8/161 (4%)
Query: 274 ICLNINGWEMMISLGFMAAASVRVSNELGKGSA----KAAKFSIVVTVLTSLAIGSFLFL 329
I L++ MI +G A +VR+ + +G+ + A + + T S L L
Sbjct: 297 IALSVAQLCFMIPMGVAEATTVRIGHAVGRCDLLVMRRVAWAGYAIVIGTQTLSASVLLL 356
Query: 330 FFLFFRERLAYIFTSNKEVAAAVGELSPLLSISILLNSVQPVLSGVAIGAGWQSTVAYVN 389
+ + + +T + VA+ +L +I + +Q + SGV G +
Sbjct: 357 GY----DVIVAAYTDDLVVASLASKLLLFAAIFQFPDGLQMLSSGVLRGMKDTRVPMLLA 412
Query: 390 IGCYYIIGIPVGIVLGNIIHWQVKGIWMGMLFGTLIQTIVL 430
+ Y+ +G+P+G+ LG + W +G+W+G++ G ++L
Sbjct: 413 MISYWGLGMPLGLGLGFALEWNSRGMWIGLIIGLTAAALLL 453
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.329 0.141 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,365,098
Number of Sequences: 164201
Number of extensions: 2212167
Number of successful extensions: 6923
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6874
Number of HSP's gapped (non-prelim): 55
length of query: 469
length of database: 59,974,054
effective HSP length: 114
effective length of query: 355
effective length of database: 41,255,140
effective search space: 14645574700
effective search space used: 14645574700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC145330.19