BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145329.1 - phase: 0
(236 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RSC1_YEAST (P53236) Chromatin structure remodeling complex prote... 36 0.091
NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO... 36 0.091
SX11_CHICK (P48435) Transcription factor SOX-11 34 0.26
YP58_YEAST (Q99299) Hypothetical protein YPL158C 33 0.77
S521_RAT (Q9QY02) Putative splicing factor YT521 (RA301-binding ... 33 0.77
RGP1_XENLA (O13066) Ran GTPase-activating protein 1 32 1.0
SPA2_YEAST (P23201) SPA2 protein 32 1.3
IE68_PRVKA (P24827) Immediate-early protein RSP40 32 1.3
CENB_MOUSE (P27790) Major centromere autoantigen B (Centromere p... 32 1.3
BA2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2... 32 1.3
WR10_ARATH (Q9LG05) Probable WRKY transcription factor 10 (WRKY ... 31 2.2
IFH1_YEAST (P39520) IFH1 protein (RRP3 protein) 31 2.2
HOS3_YEAST (Q02959) Histone deacetylase HOS3 31 2.2
BA2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2... 31 2.2
YGP0_YEAST (P53115) Hypothetical 171.5 kDa helicase in NUT1-ARO2... 31 2.9
UCRH_YEAST (P00127) Ubiquinol-cytochrome C reductase complex 17 ... 31 2.9
NUCL_MOUSE (P09405) Nucleolin (Protein C23) 31 2.9
CC45_YEAST (Q08032) Cell division control protein 45 31 2.9
APC_HUMAN (P25054) Adenomatous polyposis coli protein (APC protein) 31 2.9
MODC_HAEIN (P45321) Molybdenum import ATP-binding protein modC (... 30 3.8
>RSC1_YEAST (P53236) Chromatin structure remodeling complex protein
RSC1 (Remodel the structure of chromatin complex subunit
RSC1)
Length = 928
Score = 35.8 bits (81), Expect = 0.091
Identities = 17/26 (65%), Positives = 18/26 (68%), Gaps = 3/26 (11%)
Query: 109 SGDNDGDECDVCRVDEEVDDENEDEE 134
SGDNDG ECD EE +DENED E
Sbjct: 873 SGDNDGKECDTA---EESEDENEDTE 895
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein
NOP77)
Length = 685
Score = 35.8 bits (81), Expect = 0.091
Identities = 31/101 (30%), Positives = 47/101 (45%), Gaps = 23/101 (22%)
Query: 104 KGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFD---------------RESFSRMLRR 148
K + ESG+ D +E D+E +DENE+E+ + D RE FS +R
Sbjct: 242 KDDNESGNEDAEE----NHDDE-EDENEEEDRQVDQASKNKESKRKAQNKREDFSVFVRN 296
Query: 149 V--TLVEARMYAHMSHLGNLAYSIPNIKQGNLLKRCGLRFV 187
V E + H S G++ Y++P I + L + G FV
Sbjct: 297 VPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAK-GTAFV 336
>SX11_CHICK (P48435) Transcription factor SOX-11
Length = 396
Score = 34.3 bits (77), Expect = 0.26
Identities = 20/60 (33%), Positives = 30/60 (49%), Gaps = 6/60 (10%)
Query: 80 RTVKEGDGQNGNWVFKVFDLNS-----VWKGEQESGDNDGDECDVCRVDEEVDDENEDEE 134
+ GD +VF ++S V+ E+E + D DE + R+ +E DDE EDEE
Sbjct: 173 KAAPHGDYAGDEYVFGALKVSSKAVKCVFVDEEEEDEEDEDELQL-RIKQEADDEEEDEE 231
>YP58_YEAST (Q99299) Hypothetical protein YPL158C
Length = 758
Score = 32.7 bits (73), Expect = 0.77
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 81 TVKEGDGQNGNWVFKVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
T E DG + ++FD +V E+E D D ++ DEE ++EN+DEE D E
Sbjct: 631 TEYEADGSSS----QIFDGVTVRADEEEEEDEDDED------DEEEEEENDDEEDEEDEE 680
>S521_RAT (Q9QY02) Putative splicing factor YT521 (RA301-binding
protein)
Length = 738
Score = 32.7 bits (73), Expect = 0.77
Identities = 27/97 (27%), Positives = 42/97 (42%), Gaps = 13/97 (13%)
Query: 45 RRSNKSSMFSRFIGSSARNNCLAAVNDAFTAENADRTVKEGDGQNGNWVFKVFDLNSVWK 104
RR+++SS S+ G+S + ++E + T E +G +
Sbjct: 161 RRASRSSQSSKEEGNSEEYGSDHETGSSASSEQGNNTENEEEGGEED------------V 208
Query: 105 GEQESGDNDGDECDVCRVD-EEVDDENEDEEIRFDRE 140
E E D DGD+ + D EE +DE EDEE + E
Sbjct: 209 EEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEE 245
>RGP1_XENLA (O13066) Ran GTPase-activating protein 1
Length = 580
Score = 32.3 bits (72), Expect = 1.0
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 106 EQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
+++ D+D DE D D++ DDEN+DEE+ + E
Sbjct: 360 DEDEDDDDDDEDD----DDDEDDENDDEEVEEEEE 390
>SPA2_YEAST (P23201) SPA2 protein
Length = 1466
Score = 32.0 bits (71), Expect = 1.3
Identities = 44/213 (20%), Positives = 83/213 (38%), Gaps = 19/213 (8%)
Query: 33 HVHVHQSHVTTVRRSNKSSMFSRFIGSSARNNCLAAVNDAFTAENADRTVKEGDGQNGNW 92
H V+ + + V++++ S + + +N+ +N T + +
Sbjct: 1206 HAFVNPTENSQVKKTSHSPFLNSKPVQYENSESNGGINNHIKIKNTGETTAHDEKHYSDD 1265
Query: 93 VFKVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRESFSRMLRRVTLV 152
+ + EQE N +E +E DD+ E+E+ FD ++F TL
Sbjct: 1266 DDSSYQFVPMKHEEQEQEQNRSEE------EESEDDDEEEEDSDFDVDTFDIENPDNTLS 1319
Query: 153 EARMYAH------MSHLGNLAYSI--PNIKQGNLLKRCGLRFVTSSIEKKELAASIKKEE 204
E +Y +S + +L SI P + +GNL R + I + A SI E+
Sbjct: 1320 ELLLYLEHQTMDVISTIQSLLTSIKKPQVTKGNL--RGESNAINQVIGQMVDATSISMEQ 1377
Query: 205 T---NGKDAGERKVEKNGELKTSASNACEIAMD 234
+ N K G+ V+ + + C++ D
Sbjct: 1378 SRNANLKKHGDWVVQSLRDCSRRMTILCQLTGD 1410
>IE68_PRVKA (P24827) Immediate-early protein RSP40
Length = 364
Score = 32.0 bits (71), Expect = 1.3
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 106 EQESGDNDGDECDVCRVDEEVDDENEDEE 134
E+E GD DG E DV D+E +DE ++E+
Sbjct: 236 EEEEGDEDG-ETDVYEEDDEAEDEEDEED 263
>CENB_MOUSE (P27790) Major centromere autoantigen B (Centromere
protein B) (CENP-B)
Length = 599
Score = 32.0 bits (71), Expect = 1.3
Identities = 22/89 (24%), Positives = 43/89 (47%), Gaps = 11/89 (12%)
Query: 108 ESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE-----SFSRMLRRVTLVEARMYAH--- 159
E G++ + D DEE D+E+EDEE D + SF + +V+ + +
Sbjct: 505 EGGEDSDSDSDEEEDDEEEDEEDEDEEDDEDGDEVPVPSFGEAMAYFAMVKRYLTSFPID 564
Query: 160 ---MSHLGNLAYSIPNIKQGNLLKRCGLR 185
SH+ +L + + ++ + N ++ G+R
Sbjct: 565 DRVQSHILHLEHDLVHVTRKNHARQAGVR 593
>BA2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2B
(hWALp4)
Length = 1972
Score = 32.0 bits (71), Expect = 1.3
Identities = 36/158 (22%), Positives = 68/158 (42%), Gaps = 32/158 (20%)
Query: 104 KGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE-----------------SFSRML 146
K ++ GD+D D+ D D++ D+++EDEE + D++ S +
Sbjct: 1093 KRRRKGGDSDYDDDDDDDSDDQGDEDDEDEEDKEDKKGKKTDICEDEDEGDQAASVEELE 1152
Query: 147 RRVTLVEARMYAHMSHLGNLAYSIPNIKQGN--------LLKRCGLRFVTSSIEKKELAA 198
+++ + + + L + ++S+ ++ G +L +CG FV +E E
Sbjct: 1153 KQIEKLSKQQSQYRRKLFDASHSLRSVMFGQDRYRRRYWILPQCGGIFV-EGMESGEGLE 1211
Query: 199 SIKKEETNGKDA-----GERKVEKNGE-LKTSASNACE 230
I KE K A E E +G+ L S ++ CE
Sbjct: 1212 EIAKEREKLKKAESVQIKEEMFETSGDSLNCSNTDHCE 1249
>WR10_ARATH (Q9LG05) Probable WRKY transcription factor 10 (WRKY
DNA-binding protein 10)
Length = 506
Score = 31.2 bits (69), Expect = 2.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 98 DLNSVWKGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
D+ S+ E E G+ D D+ D DE+ D ++D+++ D E
Sbjct: 234 DIISIEDSESEDGNKDDDDEDFQYEDEDEDQYDQDQDVDEDEE 276
>IFH1_YEAST (P39520) IFH1 protein (RRP3 protein)
Length = 1085
Score = 31.2 bits (69), Expect = 2.2
Identities = 42/215 (19%), Positives = 78/215 (35%), Gaps = 31/215 (14%)
Query: 18 ITSISATTTTSRANDH-VHVHQSHVTTVRRSNKSSMFSRFIGSS---ARNNCLAAVNDAF 73
++ +S + N H + +++ + KS + R I + ++ AV D
Sbjct: 63 LSDVSDSDKNKSTNPHKIKRKAKNISNNSQGKKSKLIQRQIDNDDEGTESSDYQAVTDGE 122
Query: 74 TAENADRTVKEGDGQNGNWVFKVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDDENEDE 133
+EN + +E + E + D+D D+ D D + + ++DE
Sbjct: 123 ESENEEEESEEEE-------------------EDDDEDDDDDDDDGSDSDSDSETSSDDE 163
Query: 134 EIRFDRESFSRMLRRVTLVEARMYAHMSHLGNLAYSIPNIKQGNLLKRCGLRFVTSSIEK 193
I F + + R R + + A M+ N YS N + + +K
Sbjct: 164 NIDFVKLTAQRKKRAMKALSA-----MNTNSNTLYSSRENSNKNKSVKLSPKKENEEEQK 218
Query: 194 KELAASIKKEETNGKDAGERKVEKNGELKTSASNA 228
+E K++E K K E NG T+ A
Sbjct: 219 EE---KEKEKEEQQKQQESNKKEVNGSGTTTTQQA 250
>HOS3_YEAST (Q02959) Histone deacetylase HOS3
Length = 697
Score = 31.2 bits (69), Expect = 2.2
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 43 TVRRSNKSSMFSRFIGSSARNNCLAAVNDAFTAENADRTVKEGDGQNGNWVFKVFDLNSV 102
TV ++ S++ R I S N A + EN R+ ++ + + ++ S
Sbjct: 511 TVEPASTSTIAQRIIRSHRSN----ASPEKELHENKPRSTEKQEQR---------EIRSD 557
Query: 103 WKGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE---SFSRMLRRVTL 151
K +Q S +N E + + +E E+EDEE +D E +F+R + +T+
Sbjct: 558 TKVKQLSSNNRAAETQIPFLQQEFSSEDEDEEYVYDEELNKTFNRTVEDITI 609
>BA2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B
(Extracellular matrix protein F22)
Length = 2130
Score = 31.2 bits (69), Expect = 2.2
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 104 KGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
K ++ GD+D D+ D D++ D+++EDEE + D++
Sbjct: 1212 KRRRKGGDSDYDDDDDDDSDDQADEDDEDEEDKEDKK 1248
>YGP0_YEAST (P53115) Hypothetical 171.5 kDa helicase in NUT1-ARO2
intergenic region
Length = 1489
Score = 30.8 bits (68), Expect = 2.9
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 22/104 (21%)
Query: 36 VHQSHVTTVRRSNKSSMFSRFIGSSARNNCLAA------VNDAFTAENADRTVKEGDGQN 89
+ + +T R +N SM I S + + AA + D T + TV + ++
Sbjct: 159 MEEDEASTGRHTNGKSMRGNGIQKSRKKDAAAAAAIGKAIKDDQTHADTVVTVNGDENED 218
Query: 90 GNWVFKVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDDENEDE 133
GN GE E DND + + D + D+ENE++
Sbjct: 219 GN------------NGEDEDNDNDNENNN----DNDNDNENEND 246
>UCRH_YEAST (P00127) Ubiquinol-cytochrome C reductase complex 17 kDa
protein (EC 1.10.2.2) (Mitochondrial hinge protein)
(Complex III polypeptide VI)
Length = 147
Score = 30.8 bits (68), Expect = 2.9
Identities = 15/29 (51%), Positives = 21/29 (71%), Gaps = 1/29 (3%)
Query: 106 EQESGDNDGDECDVCRVDEEVDDENEDEE 134
E+E+GD D DE D D++ DDE+E+EE
Sbjct: 44 EEENGDEDEDE-DEDEDDDDDDDEDEEEE 71
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)
Length = 706
Score = 30.8 bits (68), Expect = 2.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 107 QESGDNDGDECDVCRVDEEVDDENEDEE 134
+E D + DE D DEE DDE++DEE
Sbjct: 240 EEEDDEEEDEDDEDEDDEEEDDEDDDEE 267
Score = 29.6 bits (65), Expect = 6.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 106 EQESGDNDGDECDVCRVDEEVDDENEDE 133
++E D D DE D DE+ DDE EDE
Sbjct: 140 KKEDSDEDEDEEDEDDSDEDEDDEEEDE 167
>CC45_YEAST (Q08032) Cell division control protein 45
Length = 650
Score = 30.8 bits (68), Expect = 2.9
Identities = 17/59 (28%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Query: 79 DRTVKEGDGQNGNWVFKVFDLNSVWKGEQESGD---NDGDECDVCRVDEEVDDENEDEE 134
D TV + G+ +K+ +L+ ++ SGD N+G + + DE D++ EDE+
Sbjct: 145 DGTVDDTLGEQKEAYYKLLELDEESGDDELSGDENDNNGGDDEATDADEVTDEDEEDED 203
>APC_HUMAN (P25054) Adenomatous polyposis coli protein (APC protein)
Length = 2843
Score = 30.8 bits (68), Expect = 2.9
Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 3/67 (4%)
Query: 164 GNLAYSIPN--IKQGNLLKRCGLRFVTSSIEKKELAASIKKEETNGKDAGERKVEKNGEL 221
G ++Y+ P + Q NL K+ GL SSI + E A+ + NG A +KVE +
Sbjct: 2362 GKMSYTSPGRQMSQQNLTKQTGLSKNASSIPRSESASKGLNQMNNGNGA-NKKVELSRMS 2420
Query: 222 KTSASNA 228
T +S +
Sbjct: 2421 STKSSGS 2427
>MODC_HAEIN (P45321) Molybdenum import ATP-binding protein modC (EC
3.6.3.29)
Length = 351
Score = 30.4 bits (67), Expect = 3.8
Identities = 25/93 (26%), Positives = 41/93 (43%), Gaps = 9/93 (9%)
Query: 109 SGDNDGDECDVCRVDEEVDDENEDEEIRFDRESFSRMLRRVTLV--EARMYAHMSHLGNL 166
SG DE +C D + D +ES LR++ V +AR++ H + GNL
Sbjct: 45 SGLIQPDEGFICLNDRTLVDMES-------QESLPTHLRKIGYVFQDARLFPHYTVKGNL 97
Query: 167 AYSIPNIKQGNLLKRCGLRFVTSSIEKKELAAS 199
Y + N+ Q + L +T +++ L S
Sbjct: 98 RYGMKNVSQDDFNYIVDLLGITHLLKRYPLTLS 130
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,979,929
Number of Sequences: 164201
Number of extensions: 1134611
Number of successful extensions: 4666
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 4425
Number of HSP's gapped (non-prelim): 169
length of query: 236
length of database: 59,974,054
effective HSP length: 107
effective length of query: 129
effective length of database: 42,404,547
effective search space: 5470186563
effective search space used: 5470186563
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC145329.1