BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145061.27 - phase: 0 /pseudo
(615 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GWT1_CRYNE (Q873N0) GPI-anchored wall transfer protein 1 (EC 2.3... 34 1.3
TSA4_GIALA (P21849) Major surface-labeled trophozoite antigen 41... 33 1.7
GCST_ECOLI (P27248) Aminomethyltransferase (EC 2.1.2.10) (Glycin... 32 6.4
GCST_ECOL6 (Q8FE65) Aminomethyltransferase (EC 2.1.2.10) (Glycin... 32 6.4
CO2A_HUMAN (Q92828) Coronin-2A (WD-repeat protein 2) (IR10) 32 6.4
PROP_CAVPO (Q64181) Properdin precursor (Factor P) 31 8.4
>GWT1_CRYNE (Q873N0) GPI-anchored wall transfer protein 1 (EC
2.3.-.-) (Inositol acyltransferase GWT1)
Length = 598
Score = 33.9 bits (76), Expect = 1.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 359 PYSCWPILLTPYNVPLEMCMSKPYLFLSCIVPGPTSSLDGIDVYIQPLIDDLNRLWNGVS 418
PY W + YN + YL L+ I+P PTSS + + PL+D +N+ NG++
Sbjct: 497 PYVFW---VAAYNTTFLL----GYLLLTHIIPSPTSSQTSPSILVPPLLDAMNK--NGLA 547
Query: 419 TY 420
+
Sbjct: 548 IF 549
>TSA4_GIALA (P21849) Major surface-labeled trophozoite antigen 417
precursor
Length = 713
Score = 33.5 bits (75), Expect = 1.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 227 TDCCVNGCMLFYDNEFGKNDGALVACKFCNAPRYEVCDDAG 267
T C++ C N +G +GA CK C A + CDD G
Sbjct: 367 TSQCIDSCAKI-GNYYGATEGAKKLCKECTAANCKTCDDQG 406
>GCST_ECOLI (P27248) Aminomethyltransferase (EC 2.1.2.10) (Glycine
cleavage system T protein)
Length = 363
Score = 31.6 bits (70), Expect = 6.4
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 36/133 (27%)
Query: 115 FGVMEDMVGDAVGVNLSYN-EGGEEETIPNEKALKFYKMMQEVN-KPLFEGSSDS----- 167
FGV GD Y E G E +PNEKA F++ + E KP G+ D+
Sbjct: 174 FGVQ---AGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRLEA 230
Query: 168 -------KLSMSVRLLAAASDWSVA------------------EEGSECYTD-IMRDTTP 201
++ ++ LAA W++A E G+E +M +
Sbjct: 231 GMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREHGTEKLVGLVMTEKGV 290
Query: 202 VKDNLPLSFYEAQ 214
+++ LP+ F +AQ
Sbjct: 291 LRNELPVRFTDAQ 303
>GCST_ECOL6 (Q8FE65) Aminomethyltransferase (EC 2.1.2.10) (Glycine
cleavage system T protein)
Length = 364
Score = 31.6 bits (70), Expect = 6.4
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 36/133 (27%)
Query: 115 FGVMEDMVGDAVGVNLSYN-EGGEEETIPNEKALKFYKMMQEVN-KPLFEGSSDS----- 167
FGV GD Y E G E +PNEKA F++ + E KP G+ D+
Sbjct: 175 FGVQ---AGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKPCGLGARDTLRLEA 231
Query: 168 -------KLSMSVRLLAAASDWSVA------------------EEGSECYTD-IMRDTTP 201
++ ++ LAA W++A E G+E +M +
Sbjct: 232 GMNLYSQEMDETISPLAANMGWTIAWEPADRDFIGREALEAQREHGTEKLVGLVMTEKGV 291
Query: 202 VKDNLPLSFYEAQ 214
+++ LP+ F +AQ
Sbjct: 292 LRNELPVRFTDAQ 304
>CO2A_HUMAN (Q92828) Coronin-2A (WD-repeat protein 2) (IR10)
Length = 525
Score = 31.6 bits (70), Expect = 6.4
Identities = 23/77 (29%), Positives = 35/77 (44%), Gaps = 4/77 (5%)
Query: 457 ACPHCMEQTKAIWFHHG-RKHS*FDCHRPFLPATHEFRKKKNLFTKGKTEKDGPPPRTTS 515
A P + QT+ + G R S + P A H +KK T G + PPP+T +
Sbjct: 422 ASPRLLNQTEKLAAEDGWRSSSLLEEKMPRWAAEHRLEEKKTWLTNGFDVFECPPPKTEN 481
Query: 516 EEV---YRRVNELGLLK 529
E + YR+ E+ L+
Sbjct: 482 ELLQMFYRQQEEIRRLR 498
>PROP_CAVPO (Q64181) Properdin precursor (Factor P)
Length = 470
Score = 31.2 bits (69), Expect = 8.4
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 9/57 (15%)
Query: 206 LPLSFYE--AQKLVEKLGLEVKTTDCCVNGCMLFYDNEFGKNDGALVACKFCNAPRY 260
L S YE + K + LG +V DCC+N F + + G C+ C +PR+
Sbjct: 30 LCFSQYEDSSSKCKDLLGKDVSLEDCCLNAAYAFKERDNGH-------CQACRSPRW 79
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.138 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,236,015
Number of Sequences: 164201
Number of extensions: 3516796
Number of successful extensions: 6869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6868
Number of HSP's gapped (non-prelim): 6
length of query: 615
length of database: 59,974,054
effective HSP length: 116
effective length of query: 499
effective length of database: 40,926,738
effective search space: 20422442262
effective search space used: 20422442262
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 69 (31.2 bits)
Medicago: description of AC145061.27