Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145024.2 - phase: 0 
         (355 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AAPC_PENCL (Q40784) Possible apospory-associated protein C             46  1e-04
T23E_BACTF (Q02403) Transposase for insertion sequence element I...    35  0.29
PURL_PYRAB (Q9UXW6) Phosphoribosylformylglycinamidine synthase I...    33  1.4
SEP1_SCHPO (O43058) Forkhead protein sep1                              32  1.9
TBB2_NEIMB (Q06988) Transferrin-binding protein 2 precursor (TBP-2)    32  2.4
VATA_PHAAU (P13548) Vacuolar ATP synthase catalytic subunit A (E...    31  4.2
SIP3_YEAST (P38717) SIP3 protein                                       31  4.2
PMPF_CHLMU (Q9PL46) Probable outer membrane protein pmpF precurs...    30  9.3
LGR7_HUMAN (Q9HBX9) Relaxin receptor 1 (Leucine-rich repeat-cont...    30  9.3

>AAPC_PENCL (Q40784) Possible apospory-associated protein C
          Length = 329

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 31/105 (29%), Positives = 53/105 (49%), Gaps = 20/105 (19%)

Query: 248 WTQQGVPITLLENKMSRVFAAPPKERTKAFYNTPPSKYEIIDQGREIFYRVIRMGFEDIY 307
           +T+QG  I + E+++ +V+ A P            SK  IID  ++  + V + G  D  
Sbjct: 214 FTEQGDAI-VFESEVDKVYLAAP------------SKIAIIDHEKKKTFVVTKEGLPDAV 260

Query: 308 VSSPGSMSDKYGRDY-------FVCTGPASILEPVTVNPGEEFRG 345
           V +P     K  +D+        +C  PA++ +P+T+ PGEE+RG
Sbjct: 261 VWNPWDKKAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRG 305


>T23E_BACTF (Q02403) Transposase for insertion sequence element
           IS231E
          Length = 478

 Score = 35.0 bits (79), Expect = 0.29
 Identities = 41/189 (21%), Positives = 72/189 (37%), Gaps = 44/189 (23%)

Query: 18  SSAATTTTPLSTPEALNDKFGRKGIKFLESNSIPIVELTVRNGSSLSLRLPDAHVTSYKP 77
           S     T  L +PE LN +F +K + FL+     I    ++N    +  +P + +T    
Sbjct: 67  SQLHAVTGTLMSPEGLNKRFNKKAVCFLKH----IFSTLLKNKICETSLIPSSSIT---- 118

Query: 78  KVFWKDDGLEELLYTIPANETGLYKAKGGI----------------GLVLNEVLQPGAKE 121
             F +   L+  ++ +P +   +Y   GG                 G  LN  ++PG   
Sbjct: 119 -YFQRIRILDATIFQVPKHLANVYPGSGGCAQTAGIKIQLEYDLHSGQFLNFQVEPGKNN 177

Query: 122 -----------LLPSTLEWTVKDVDYDAIDALQ------VELISTNRFFDMTYIVSLYPV 164
                      L P  L   ++D+ Y ++D L       V  IS  +  +M YI + +P 
Sbjct: 178 DKTFGTECLATLRPGDL--CIRDLGYYSLDDLDQMDQRGVYYISRLKLNNMVYIKNEFPE 235

Query: 165 SMATAVIVK 173
                ++ K
Sbjct: 236 YFRNGIVKK 244


>PURL_PYRAB (Q9UXW6) Phosphoribosylformylglycinamidine synthase II
           (EC 6.3.5.3) (FGAM synthase II)
          Length = 705

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 198 AAIKGLQTCSYCSHPPLDSPFQILTPSEAMKSESQRLISFGAEPE 242
           A  KGL    Y    PL  P   +TP E M SESQ  + F  EPE
Sbjct: 266 AGKKGLGAVIYADRVPLREPG--MTPLEVMISESQERMLFAVEPE 308


>SEP1_SCHPO (O43058) Forkhead protein sep1
          Length = 663

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 203 LQTCSYCSHPPLDSPFQILTPSEAMKSES---QRLISFGAEPEMKPGSWTQQGVPITLLE 259
           LQ+C+    PPL SP    +PSE++++ES   +   S G   +  P     +G P++ LE
Sbjct: 327 LQSCTNSPSPPLSSPASSASPSESLRNESLGIKSAKSLGLNKDDAP----VEGPPVSHLE 382


>TBB2_NEIMB (Q06988) Transferrin-binding protein 2 precursor (TBP-2)
          Length = 599

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 68/291 (23%), Positives = 108/291 (36%), Gaps = 53/291 (18%)

Query: 34  NDKFGRKGIKFLESNSIPIVELTVR---------NGSSLSLRLPDAHVTSYKPKVFWKDD 84
           N  + R G  +L  N+I I    V           G   S  LP   +T YK    +  D
Sbjct: 138 NFTYVRSGYVYLNKNNIDIKNNIVLFGPDGYLYYKGKEPSKELPSEKIT-YKGTWDYVTD 196

Query: 85  GLEELLYTIPANETGLYKAKGGIGLVLNEVLQPGAKELLPSTLEWTVKDVDYDAIDALQV 144
            +E+  +       GL  A GG        L+ G   +L +  E +    D+      +V
Sbjct: 197 AMEKQRFE------GLGSAAGGDKSGALSALEEG---VLRNQAEASSGHTDFGMTSEFEV 247

Query: 145 ELISTNRFFDMTYIVSLYPVSMATAVIVKNKSPKPVTLT-NAILSHFRFKRRGGAAIKGL 203
           +      F D T   +LY  +  T    +NK  K    T  A L   RFK +  AA KG 
Sbjct: 248 D------FSDKTIKGTLYRNNRITQNNSENKQIKTTRYTIQATLHGNRFKGKALAADKG- 300

Query: 204 QTCSYCSHPPLDSPFQILTPSEAMKSESQRLISFGAEPEMKPGSWTQQGVPITLLENKMS 263
              +  SHP        ++ S++++        +G + E   G +          +NK++
Sbjct: 301 --ATNGSHP-------FISDSDSLEGGF-----YGPKGEELAGKFLSN-------DNKVA 339

Query: 264 RVFAAPPKERTKAFYNTPPSKYEIIDQGREIFYRVIRMGFEDIYVSSPGSM 314
            VF A  K++        P+   +ID      YR+    F+   + S G +
Sbjct: 340 AVFGAKQKDKKDGENAAGPATETVIDA-----YRITGEEFKKEQIDSFGDV 385


>VATA_PHAAU (P13548) Vacuolar ATP synthase catalytic subunit A (EC
           3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pump
           alpha subunit) (V-ATPase 69 kDa subunit) (VAA3-1)
          Length = 622

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 22/76 (28%), Positives = 34/76 (43%), Gaps = 4/76 (5%)

Query: 256 TLLENK-MSRVFAAPPKERTKAFYNTPPSKYEIIDQGREIFYRVIRMGFEDIY---VSSP 311
           T+ EN  M    A PP    K  Y  PP +Y I D   E+ ++ ++  F  +    V +P
Sbjct: 156 TVFENTLMQHHIALPPDAMGKITYIAPPGQYSITDTVLELEFQGVKKKFTMLQTWPVRTP 215

Query: 312 GSMSDKYGRDYFVCTG 327
             ++ K   D  + TG
Sbjct: 216 RPVASKLAADTPLLTG 231


>SIP3_YEAST (P38717) SIP3 protein
          Length = 1229

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 18/57 (31%), Positives = 26/57 (45%)

Query: 139 IDALQVELISTNRFFDMTYIVSLYPVSMATAVIVKNKSPKPVTLTNAILSHFRFKRR 195
           +DAL+  +  T  FFD  Y VS      A   ++    P P  L+N  +S+  F  R
Sbjct: 41  VDALEDWIEKTVDFFDQKYKVSFEDFRRAKETLLSQLLPPPALLSNGFVSNQSFTPR 97


>PMPF_CHLMU (Q9PL46) Probable outer membrane protein pmpF precursor
           (Polymorphic membrane protein F)
          Length = 1025

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 13/30 (43%), Positives = 18/30 (59%)

Query: 326 TGPASILEPVTVNPGEEFRGAQVIEHDNLS 355
           T P +    VT+NP +EF GA V  + N+S
Sbjct: 426 TPPENSPHTVTINPSDEFSGAVVFSYKNIS 455


>LGR7_HUMAN (Q9HBX9) Relaxin receptor 1 (Leucine-rich
           repeat-containing G protein-coupled receptor 7)
          Length = 757

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 39/163 (23%), Positives = 59/163 (35%), Gaps = 30/163 (18%)

Query: 66  RLPDAHVTSYKPKVFWKD------DGLEELLYTIPANETGLYKAKGGIGLVLNEVLQPGA 119
           RLPD  +  + P++ W D        L  L +   +N T L   K  I  +      P  
Sbjct: 236 RLPDKPLCQHMPRLHWLDLEGNHIHNLRNLTFISCSNLTVLVMRKNKINHLNENTFAPLQ 295

Query: 120 K-----------ELLPSTLEWTVKDVDYDAIDALQVELISTNRFFDMTYIVSLYPVSMAT 168
           K           E LP  +   +K++    +    ++ I  N+F    Y+V L  +S+  
Sbjct: 296 KLDELDLGSNKIENLPPLIFKDLKELSQLNLSYNPIQKIQANQF---DYLVKLKSLSLEG 352

Query: 169 AVIVKNKSPKPVTLTNAILSHFRFKRRGGAAIKGLQTCSYCSH 211
             I   +      L N  LSH  FK+         Q C Y  H
Sbjct: 353 IEISNIQQRMFRPLMN--LSHIYFKK--------FQYCGYAPH 385


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,050,476
Number of Sequences: 164201
Number of extensions: 1836214
Number of successful extensions: 4114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4107
Number of HSP's gapped (non-prelim): 10
length of query: 355
length of database: 59,974,054
effective HSP length: 111
effective length of query: 244
effective length of database: 41,747,743
effective search space: 10186449292
effective search space used: 10186449292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)


Medicago: description of AC145024.2