BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144929.2 + phase: 0 
         (120 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog               30  0.97
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type...    30  1.3
RGE4_HUMAN (Q8WZA2) RAP guanine-nucleotide-exchange factor 4 (cA...    29  1.6

>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score = 30.0 bits (66), Expect = 0.97
 Identities = 12/28 (42%), Positives = 13/28 (45%)

Query: 54   NQLCVTGCGGLEIAQHLFLSCPCFNSQW 81
            NQ C  GCGG     H +  CP   S W
Sbjct: 1126 NQRCWRGCGGKGTLLHCWWECPLIRSFW 1153


>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1025

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 13/31 (41%), Positives = 16/31 (50%)

Query: 45  MVRGTLSHDNQLCVTGCGGLEIAQHLFLSCP 75
           M RG  ++ N LC  GCG  E   H+   CP
Sbjct: 834 MSRGRRTNGNALCRAGCGLPETLYHVVQQCP 864


>RGE4_HUMAN (Q8WZA2) RAP guanine-nucleotide-exchange factor 4
           (cAMP-regulated guanine nucleotide exchange factor II)
           (cAMP-GEFII) (Exchange factor directly activated by cAMP
           2) (Epac 2)
          Length = 1011

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 21  QVPLKVSILAWRLIRNRLLMKDNLMVRGTLSH---DNQLCVTGCGGLEIAQHLFLSCPCF 77
           +VP +  + A +++RN +L +   M+R    H     Q CV    G E+   +    PC 
Sbjct: 197 KVPSEKILRAGKILRNAILSRAPHMIRDRKYHLKTYRQCCV----GTELVDWMMQQTPCV 252

Query: 78  NSQWDLVRSW 87
           +S+   V  W
Sbjct: 253 HSRTQAVGMW 262


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.328    0.139    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,424,731
Number of Sequences: 164201
Number of extensions: 515667
Number of successful extensions: 998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 3
length of query: 120
length of database: 59,974,054
effective HSP length: 96
effective length of query: 24
effective length of database: 44,210,758
effective search space: 1061058192
effective search space used: 1061058192
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)