BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144806.10 + phase: 0
(407 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC 6.3.2... 142 2e-33
AMF2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform ... 141 3e-33
YUES_CAEEL (P90859) Hypothetical RING finger protein F26E4.11 in... 69 3e-11
DZP3_HUMAN (Q86Y13) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) ... 57 1e-07
DZP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) ... 55 3e-07
Z364_MOUSE (Q9D0C1) Zinc finger protein 364 54 7e-07
RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacti... 54 7e-07
RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacti... 53 2e-06
RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a 53 2e-06
Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment) 51 6e-06
RNF8_MOUSE (Q8VC56) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (... 49 2e-05
RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (... 49 2e-05
RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a 49 3e-05
PJA1_MOUSE (O55176) Ubiquitin protein ligase Praja1 (EC 6.3.2.-) 48 4e-05
RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b 48 5e-05
ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P... 47 9e-05
PJA1_HUMAN (Q8NG27) Ubiquitin protein ligase Praja1 (EC 6.3.2.-) 47 1e-04
YOUD_CAEEL (P30631) Hypothetical RING finger protein ZK637.14 in... 46 1e-04
TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repe... 46 1e-04
ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P... 46 1e-04
>AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC
6.3.2.19) (AMF receptor)
Length = 643
Score = 142 bits (357), Expect = 2e-33
Identities = 102/375 (27%), Positives = 172/375 (45%), Gaps = 57/375 (15%)
Query: 4 LQTYAGLSLIATLAITYHAFNSRSQ-------------------FYPAMV---------- 34
L+TY GLS +A L A+ + SQ PA +
Sbjct: 14 LRTYTGLSGLALLGTIVSAYRALSQPEDGSGEPEPLTAPLQPEALAPARLTAGGPRARDV 73
Query: 35 --YLATSKISLVLLLNMALVIMCVLWQLTKKVFLGSLREAEVERLNEQAWREVME----I 88
YL + + + +L+N A ++ ++ +L + + G LR +E + L ++ W + I
Sbjct: 74 AQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKDKFWNFIFYKFIFI 133
Query: 89 LFAITIFRQDFSITFLAMVTALLLIKALHWLAQKRVEYIETTPSVSVLSQVRIVSFLGFL 148
+ + + + + L+ + + L + R EY+ +P+ + S R++S L +
Sbjct: 134 FGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPMSSHGRVLSLLIAM 193
Query: 149 LLLDGAFL-------YSSVKHLLATKQASVSIFFSFEYMILATTTVSIFVKYIFYVSDML 201
LL Y+ H LA F + E +++ T + ++Y+ ++ D+
Sbjct: 194 LLSCCGLAVVCCVTGYTHGMHTLA--------FMAAESLLVTVRTAHVILRYVIHLWDLN 245
Query: 202 MEGQWEKKPVFTFYLELVRDLLHLSM------YMCFFLAIFINYGVPLHLIRELYETFRN 255
EG WE K + +Y + V +L LS+ +M F I+++ L + +L F
Sbjct: 246 HEGTWEGKGTYVYYTDFVMELALLSLDLMHHIHMLLFGNIWLSMA-SLVIFMQLRYLFHE 304
Query: 256 FKVRISDYLRYRKITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHC 315
+ RI + Y ++ NM RF ATPEEL N+ C IC + M A+KL CGHLFH C
Sbjct: 305 VQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSC 364
Query: 316 LRSWLERQHTCPTCR 330
LRSWLE+ +CPTCR
Sbjct: 365 LRSWLEQDTSCPTCR 379
>AMF2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform 2
(EC 6.3.2.-) (AMF receptor) (gp78)
Length = 643
Score = 141 bits (356), Expect = 3e-33
Identities = 90/321 (28%), Positives = 158/321 (49%), Gaps = 26/321 (8%)
Query: 35 YLATSKISLVLLLNMALVIMCVLWQLTKKVFLGSLREAEVERLNEQAWREVME----ILF 90
YL + + + +L+N A ++ ++ +L + + G LR +E + L ++ W + I
Sbjct: 76 YLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKDKFWNFIFYKFIFIFG 135
Query: 91 AITIFRQDFSITFLAMVTALLLIKALHWLAQKRVEYIETTPSVSVLSQVRIVSFLGFLLL 150
+ + + + + L+ + + L + R EY+ +P+ + S R++S L +LL
Sbjct: 136 VLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPMSSHGRVLSLLVAMLL 195
Query: 151 LDGAFL-------YSSVKHLLATKQASVSIFFSFEYMILATTTVSIFVKYIFYVSDMLME 203
Y+ H LA F + E +++ T + ++Y+ ++ D+ E
Sbjct: 196 SCCGLAAVCSITGYTHGMHTLA--------FMAAESLLVTVRTAHVILRYVIHLWDLNHE 247
Query: 204 GQWEKKPVFTFYLELVRDLLHLSM------YMCFFLAIFINYGVPLHLIRELYETFRNFK 257
G WE K + +Y + V +L LS+ +M F I+++ L + +L F +
Sbjct: 248 GTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMA-SLVIFMQLRYLFHEVQ 306
Query: 258 VRISDYLRYRKITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLR 317
RI + Y ++ NM RF ATPEEL N+ C IC + M A+KL CGHLFH CLR
Sbjct: 307 RRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLFHNSCLR 366
Query: 318 SWLERQHTCPTCRALVVPSEN 338
SWLE+ +CPTCR + ++N
Sbjct: 367 SWLEQDTSCPTCRMSLNIADN 387
>YUES_CAEEL (P90859) Hypothetical RING finger protein F26E4.11 in
chromosome I
Length = 564
Score = 68.6 bits (166), Expect = 3e-11
Identities = 55/223 (24%), Positives = 106/223 (46%), Gaps = 15/223 (6%)
Query: 116 LHWLAQKRVEYIETTPSVSVLSQ-VRIVSFLGFLLLLDGAFLYSSVKHLLATKQASVSIF 174
L ++ +R+++I +PS SQ + +S F + + FL S +H L T Q +V ++
Sbjct: 164 LQFITCQRLKHI--SPSCDRGSQKISFLSLFLFFVSIAMTFLISRFQHHL-TWQPAVLLY 220
Query: 175 FSFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELVRDLL-HLSMYMCFFL 233
F + +T ++ + S + + F ++LEL+ + + L + F
Sbjct: 221 FDCLLAVFRST----YILFRCISSSRVFSFNPDSVRHFNYWLELITNFVCELIQMLSFAQ 276
Query: 234 AIFINYGVPLHLIRELYE---TFRNFKVRISDYLRYRKITSNMNDRFPDATPEELNSNDL 290
+ + G+ L I LY T+ ++S + ++KI ++ +P + + D
Sbjct: 277 LLAFSPGLNLTSIFFLYHMKLTYNCMTEQLSRHRNHKKIFEHIERSYPSV---KCANGDD 333
Query: 291 TCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALV 333
C++C E + T+++L C H FH CL WL + +CPTCR +
Sbjct: 334 RCVVCWELLGTSRRLPCSHQFHDWCLMWWLAQDSSCPTCRCTI 376
>DZP3_HUMAN (Q86Y13) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-)
(DAZ-interacting protein 3) (RNA-binding ubiquitin ligase
of 138 kDa) (hRUL138)
Length = 1208
Score = 56.6 bits (135), Expect = 1e-07
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 280 ATPEELNSNDLTCIICREEMT--TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337
+ P+E + C+IC E ++ L C H FH C+R WL +Q TCPTCR V+ E
Sbjct: 1136 SNPDEEEEEEEPCVICHENLSPENLSVLPCAHKFHAQCIRPWLMQQGTCPTCRLHVLLPE 1195
Query: 338 NGP 340
P
Sbjct: 1196 EFP 1198
>DZP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-)
(DAZ-interacting protein 3 homolog)
Length = 1204
Score = 55.1 bits (131), Expect = 3e-07
Identities = 25/57 (43%), Positives = 31/57 (53%), Gaps = 2/57 (3%)
Query: 292 CIICREEMT--TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATGGQ 346
C+IC E ++ L C H FH C+R WL +Q TCPTCR V+ E P GQ
Sbjct: 1144 CVICHENLSPENLSVLPCAHKFHSQCIRPWLMQQGTCPTCRLHVLQPEEFPGHPNGQ 1200
>Z364_MOUSE (Q9D0C1) Zinc finger protein 364
Length = 305
Score = 53.9 bits (128), Expect = 7e-07
Identities = 29/79 (36%), Positives = 42/79 (52%), Gaps = 8/79 (10%)
Query: 281 TPEELNSNDLTCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337
T E++N+ L C +C+E+ T +K L C H FH C+ WLE TCP CR S
Sbjct: 219 TQEQVNTG-LECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCR----KSL 273
Query: 338 NGPTATGGQQRPQSDANRQ 356
NG +T Q ++ A+ +
Sbjct: 274 NGEDSTRQTQSSEASASNR 292
>RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacting
RING finger protein) (RING finger LIM domain-binding
protein) (R-LIM)
Length = 600
Score = 53.9 bits (128), Expect = 7e-07
Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 291 TCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSEN 338
TC +C E T +KL C H FHVHC+ WL TCP CR V+ S N
Sbjct: 545 TCSVCITEYTEGDKLRKLPCSHEFHVHCIDRWLSENSTCPICRRAVLSSGN 595
>RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacting
RING finger protein) (RING finger LIM domain-binding
protein) (R-LIM) (NY-REN-43 antigen)
Length = 624
Score = 52.8 bits (125), Expect = 2e-06
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 291 TCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSEN 338
TC +C E T +KL C H +HVHC+ WL TCP CR V+ S N
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGN 619
>RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a
Length = 174
Score = 52.8 bits (125), Expect = 2e-06
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 283 EELNSNDLTCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCRALVVPSEN 338
EEL + D C +C E ++L+ C H+FH+ C+ WL +TCP CR+ V S
Sbjct: 96 EELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISST 155
Query: 339 GPTATGGQQRPQS 351
+ P S
Sbjct: 156 KTSVDDDNDHPDS 168
>Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment)
Length = 232
Score = 50.8 bits (120), Expect = 6e-06
Identities = 25/70 (35%), Positives = 36/70 (50%), Gaps = 7/70 (10%)
Query: 290 LTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATGGQ 346
L C +C+E+ T ++L C H FH C+ WLE TCP CR S NG +T
Sbjct: 154 LECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCR----KSLNGEDSTRQS 209
Query: 347 QRPQSDANRQ 356
Q ++ A+ +
Sbjct: 210 QSTEASASNR 219
>RNF8_MOUSE (Q8VC56) Ubiquitin ligase protein RNF8 (EC 6.3.2.-)
(RING finger protein 8) (AIP37) (ActA-interacting
protein 37) (LaXp180)
Length = 488
Score = 49.3 bits (116), Expect = 2e-05
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 268 KITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
++ S+MND L N+L CIIC E A L C H F C+ W++R+ CP
Sbjct: 391 EVLSHMND---------LLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECP 441
Query: 328 TCR 330
CR
Sbjct: 442 ICR 444
>RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-)
(RING finger protein 8)
Length = 485
Score = 49.3 bits (116), Expect = 2e-05
Identities = 23/63 (36%), Positives = 33/63 (51%), Gaps = 9/63 (14%)
Query: 268 KITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCP 327
++ S+MND + N+L CIIC E A L C H F +C+ W++R+ CP
Sbjct: 388 EVLSHMND---------VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECP 438
Query: 328 TCR 330
CR
Sbjct: 439 ICR 441
>RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a
Length = 185
Score = 48.5 bits (114), Expect = 3e-05
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 280 ATPEELNSNDLTCIICREEMTTAKKL----ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335
A EE +S + C IC + +++ +CGH FHV C+ WL + +CP+CR ++ P
Sbjct: 92 AAAEEGDSTE--CAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTP 149
>PJA1_MOUSE (O55176) Ubiquitin protein ligase Praja1 (EC 6.3.2.-)
Length = 605
Score = 48.1 bits (113), Expect = 4e-05
Identities = 25/68 (36%), Positives = 34/68 (49%), Gaps = 10/68 (14%)
Query: 279 DATPEELNSND-------LTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPT 328
DA PE L + D + C IC E A +L C H FH C+ WL++ TCP
Sbjct: 511 DALPEILVTEDHGTVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPV 570
Query: 329 CRALVVPS 336
CR + +P+
Sbjct: 571 CRCMFLPA 578
>RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b
Length = 200
Score = 47.8 bits (112), Expect = 5e-05
Identities = 18/48 (37%), Positives = 29/48 (59%), Gaps = 4/48 (8%)
Query: 292 CIICREEMTTAKKL----ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335
C IC E + +++ +C H FHV C+ WL + +CP+CR ++VP
Sbjct: 113 CAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVP 160
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135
protein) (IER 2.9/ER2.6)
Length = 676
Score = 47.0 bits (110), Expect = 9e-05
Identities = 36/123 (29%), Positives = 48/123 (38%), Gaps = 33/123 (26%)
Query: 278 PDATPEELNSNDLTCIICREEMT-TAKKLICGHLFHVHCLRSWLERQHTCPTCRALV--- 333
P A EL S C IC + +T A+ L C H F + C+R WLE + TCP C+A V
Sbjct: 3 PPAAAPELGS----CCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPVQSL 58
Query: 334 ------------VPSENGPTATGGQQ-------------RPQSDANRQGEGTGSSAQTEV 368
+P GP A G + P GE +G+ +
Sbjct: 59 IHSVASDECFEEIPVGGGPGADGALEPDAAVIWGEDYDAGPIDLTAADGEASGAGGEAGA 118
Query: 369 GDG 371
DG
Sbjct: 119 ADG 121
>PJA1_HUMAN (Q8NG27) Ubiquitin protein ligase Praja1 (EC 6.3.2.-)
Length = 643
Score = 46.6 bits (109), Expect = 1e-04
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 279 DATPEELNSND-------LTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQHTCPT 328
DA PE L + D + C IC E A +L C H FH C+ WL++ TCP
Sbjct: 575 DALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPV 634
Query: 329 CRALVVP 335
CR + P
Sbjct: 635 CRCMFPP 641
>YOUD_CAEEL (P30631) Hypothetical RING finger protein ZK637.14 in
chromosome III
Length = 161
Score = 46.2 bits (108), Expect = 1e-04
Identities = 28/82 (34%), Positives = 32/82 (38%), Gaps = 24/82 (29%)
Query: 276 RFPDATPEELNSNDLTCIIC----------------REEM--------TTAKKLICGHLF 311
R D + D TC IC +EE+ TT + C H F
Sbjct: 56 RLMDRETTDQQKEDATCAICLDNLQNNVDIPEDHVIKEELKIDPTTFGTTVIVMPCKHRF 115
Query: 312 HVHCLRSWLERQHTCPTCRALV 333
H CL WLE Q TCPTCR V
Sbjct: 116 HYFCLTLWLEAQQTCPTCRQKV 137
>TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repeat
protein 3) (TPR repeat protein D)
Length = 2025
Score = 46.2 bits (108), Expect = 1e-04
Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Query: 291 TCIICRE--EMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATGGQQR 348
+C IC E + + L CGH +H C + WL+ Q CP C+ + +E P+ G +
Sbjct: 1956 SCEICHEVFKSKNVRVLKCGHKYHKGCFKQWLKGQSACPACQGRDLLTEESPSGRGWPSQ 2015
Query: 349 PQ 350
Q
Sbjct: 2016 NQ 2017
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135
protein) (IER 2.9/ER2.6)
Length = 676
Score = 46.2 bits (108), Expect = 1e-04
Identities = 25/57 (43%), Positives = 32/57 (55%), Gaps = 5/57 (8%)
Query: 278 PDATPEELNSNDLTCIICREEMT-TAKKLICGHLFHVHCLRSWLERQHTCPTCRALV 333
P A EL S C IC + +T A+ L C H F + C+R WLE + TCP C+A V
Sbjct: 3 PPAAAPELGS----CCICLDAITGAARALPCLHAFCLACIRRWLEGRPTCPLCKAPV 55
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.327 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,820,042
Number of Sequences: 164201
Number of extensions: 1768099
Number of successful extensions: 6610
Number of sequences better than 10.0: 184
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 6480
Number of HSP's gapped (non-prelim): 203
length of query: 407
length of database: 59,974,054
effective HSP length: 113
effective length of query: 294
effective length of database: 41,419,341
effective search space: 12177286254
effective search space used: 12177286254
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC144806.10