BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144806.1 + phase: 0
(260 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UN89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoo... 40 0.004
TOP2_ARATH (P30182) DNA topoisomerase II (EC 5.99.1.3) 39 0.010
YKI5_CAEEL (P46012) Hypothetical protein C01G6.5 in chromosome III 39 0.016
TRP2_RAT (Q9R283) Short transient receptor potential channel 2 (... 38 0.021
MR11_COPCI (Q9UVN9) Double-strand break repair protein MRE11 38 0.028
B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-li... 37 0.048
M172_MOUSE (P97432) Membrane component, chromosome 17, surface m... 36 0.082
NUCL_XENLA (P20397) Nucleolin (Protein C23) 36 0.11
VG01_ICHV1 (Q00132) Hypothetical gene 1 protein 35 0.24
STF_LAMBD (P03764) Side tail fiber protein 34 0.31
B3A3_HUMAN (P48751) Anion exchange protein 3 (Neuronal band 3-li... 34 0.31
ZN46_HUMAN (P24278) Zinc finger protein 46 (Zinc finger protein ... 34 0.41
SAG1_YEAST (P20840) Alpha-agglutinin precursor (AG-alpha-1) 34 0.41
RECR_BRUSU (Q8G3B7) Recombination protein recR 34 0.41
RECR_BRUME (Q8YEG8) Recombination protein recR 34 0.41
RL23_MYCPN (P75578) 50S ribosomal protein L23 33 0.90
K501_ACTCH (P43393) Fruit protein PKIWI501 33 0.90
FMKC_ECOLI (P14190) K88 fimbrial protein AC precursor (K88 pilin... 32 1.2
CINA_ELEEL (P02719) Sodium channel protein (Na(+) channel) 32 1.2
VE2_HPV24 (P50770) Regulatory protein E2 32 1.5
>UN89_CAEEL (O01761) Muscle M-line assembly protein unc-89
(Uncoordinated protein 89)
Length = 6632
Score = 40.4 bits (93), Expect = 0.004
Identities = 32/117 (27%), Positives = 48/117 (40%), Gaps = 3/117 (2%)
Query: 75 KEAESTKVSTRVNRGGRGGVAEGEVEQENLD--ANVDAGTPAVVPTSRRRVPAVSTRRKK 132
KE+ES +T + GG GGV EG + ++ + D+ T T +RRV K
Sbjct: 1306 KESESESATTVIG-GGSGGVTEGSISVSKIEVVSKTDSQTDVREGTPKRRVSFAEEELPK 1364
Query: 133 EVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGRSVRNKTEISDGTSVQKAYS 189
EVI + + K KT S + G V++ E S + +K S
Sbjct: 1365 EVIDSDRKKKKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSPASPTKKEKS 1421
>TOP2_ARATH (P30182) DNA topoisomerase II (EC 5.99.1.3)
Length = 1473
Score = 39.3 bits (90), Expect = 0.010
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 128 TRRKKEVIVI-EDEDDVVSEV--------QGKATDVAKTPAAAPSSRTRAGRSVRNKTEI 178
T + I + +D+DDVV EV + AT AK PAA R R ++V + +
Sbjct: 1322 TAETSKAIAVDDDDDDVVVEVAPVKKGGRKPAATKAAKPPAA---PRKRGKQTVASTEVL 1378
Query: 179 SDGTSVQKAYSTRRSVRLVGKSLSKMS-LADTEDMESTKNDDVSEEMSVSQNEGGSI 234
+ G S +K RS KS S MS LAD ++ ES++N S S+ GG +
Sbjct: 1379 AIGVSPEKKVRKMRSSPFNKKSSSVMSRLADNKEEESSEN---VAGNSSSEKSGGDV 1432
>YKI5_CAEEL (P46012) Hypothetical protein C01G6.5 in chromosome III
Length = 952
Score = 38.5 bits (88), Expect = 0.016
Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 26/242 (10%)
Query: 14 LSKMNKIPANITNVAMADALSALPHVEGLDEILNQREGGDIGTPAVQPRTARRTTTQRKP 73
+S +I A T A+ AL P L + + + D+ TP+ P R+
Sbjct: 570 MSSTPRIDAQSTPSAVVSALPT-PMNSPLPRVTSSKSAQDVSTPSTTPNPVSRSPDPVAL 628
Query: 74 VKEAESTK--VSTRVNRGGRGGVAEGEVEQENLD-ANVDAGTPAVVPTS--RRRVPAVST 128
VK++ S++ VS V+ G A V +N + T A + TS S
Sbjct: 629 VKDSVSSESTVSGIVSLEKIGSPAAQSVASVLPSVSNTTSSTSASLTTSSVAEEEETSSK 688
Query: 129 RRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAP---SSRTRAGRSVRNKTEISDGT--- 182
+ ++D D + + + ++ TP++ P S R + S R ++ + +
Sbjct: 689 ENTDQKRAVDDSSDESARLVKQIKALSATPSSTPAESSKRKQKDTSSRKMKQLDESSADS 748
Query: 183 -----------SVQKAYSTRRSVRLVGKSLSKMSLADTEDM--ESTKNDDVSEEMSVSQN 229
S ++ RRS R +GKS + E + + + DDV EE V+
Sbjct: 749 DSEDDGRSGDKSTKRRDKARRSTR-IGKSTPAKKVGKKEKVVEDEDETDDVQEEEKVTPR 807
Query: 230 EG 231
G
Sbjct: 808 GG 809
>TRP2_RAT (Q9R283) Short transient receptor potential channel 2
(TrpC2) (rTRP2)
Length = 885
Score = 38.1 bits (87), Expect = 0.021
Identities = 42/159 (26%), Positives = 64/159 (39%), Gaps = 7/159 (4%)
Query: 75 KEAESTKVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAVVPTSRRRVPAVSTRRKKEV 134
K+++ + T N G R G EGE L + A + T+RR TRRK
Sbjct: 703 KKSDYPPIPTFTNPGARAGPGEGERVSYRLRV-IKALVQRYIETARREFE--ETRRKDLG 759
Query: 135 IVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGRSVRNKTEISDGTSVQK----AYST 190
+ + VS +Q + V KT AA + R G S+ ++ S Q A T
Sbjct: 760 NRLTELTKTVSRLQSEVASVQKTVAAGGALRPPDGASILSRYITRVRNSFQNLGPPAPDT 819
Query: 191 RRSVRLVGKSLSKMSLADTEDMESTKNDDVSEEMSVSQN 229
+ + G +++SL D+ D S E S S +
Sbjct: 820 PAELTMPGIVETEVSLEDSLDATGEAGTPASGESSSSSS 858
>MR11_COPCI (Q9UVN9) Double-strand break repair protein MRE11
Length = 731
Score = 37.7 bits (86), Expect = 0.028
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 40/173 (23%)
Query: 47 NQREGGDIGTPAVQPR----TARRTTTQRKPVKEAESTKVSTRVNRGGRGGVAEGEVEQE 102
N + D P P+ T+R TTT++ P K A + K +T RG
Sbjct: 588 NMSDDDDDDEPPPPPKRRAATSRATTTKKAPAK-APAKKATTTTARG------------- 633
Query: 103 NLDANVDAGTPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAP 162
G A P+S EVI ++D++D +SE + A V +T AA
Sbjct: 634 -------RGKKAAPPSS-----------DDEVIELDDDEDEISEEEVVAKPVKRTSRAAV 675
Query: 163 SSRTRAGRS---VRNKTEI-SDGTSVQKAYSTRRSVRLVGKSLSKMSLADTED 211
S+++A + KT T + A + R S K+ SKM D +D
Sbjct: 676 LSQSQAPAKKAPAKKKTPARQTQTQLSFAPAGRSSRAAASKARSKMVFDDDDD 728
>B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-like
protein) (Anion exchanger 3 brain isoform)
Length = 1233
Score = 37.0 bits (84), Expect = 0.048
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 61 PRTARRTTTQRKPVK-EAESTKVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAVVPTS 119
P AR T +RK K A ++ + + G G EGE E+E + ++ T AV P
Sbjct: 100 PTFARHTRRKRKKEKTSAPPSEGTPPIQEEGGAGAHEGEEEEEE-EEEGESETEAVEP-- 156
Query: 120 RRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGRSVRNKT 176
P + +K + + DEDD + GKA P+ P S RSV + +
Sbjct: 157 ----PPSGSPQKAKFSIGSDEDDSPG-LPGKAAFTKPLPSVGPRSDKSPQRSVSSSS 208
>M172_MOUSE (P97432) Membrane component, chromosome 17, surface
marker 2 (Next to BRCA1 gene 1 protein)
Length = 988
Score = 36.2 bits (82), Expect = 0.082
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 10 ELQALSKMNKIPANITNVAMADALSALPHVE------GLDEILNQREGGDIGTPAVQPRT 63
++ + ++ ++P N T V M +S LPH GL +I + EG P +
Sbjct: 568 DINIVQELERVPHN-TPVDMTPCMSPLPHDSPLIEKPGLGQIQEESEGAGFKAPPDSTVS 626
Query: 64 ARRTTTQRKPVKEAESTKVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAVVPTSRRRV 123
A+R V+E E T+ V E + LDA D P + +R +
Sbjct: 627 AKRKAETPASVEETEEDLSGTQF-------VCETVIRSLTLDAAPDHNPPCRQRSPQREL 679
Query: 124 PAVSTRRKKEVIV 136
ST ++ +++
Sbjct: 680 QLYSTEGQQPLVL 692
>NUCL_XENLA (P20397) Nucleolin (Protein C23)
Length = 650
Score = 35.8 bits (81), Expect = 0.11
Identities = 41/179 (22%), Positives = 72/179 (39%), Gaps = 22/179 (12%)
Query: 59 VQPRTARRTTTQRKPVKEAEST---KVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAV 115
V+ A++T T K +T K +T G + E E E+++ D + P
Sbjct: 47 VKKTPAKKTATPAKATPGKAATPGKKGATPAKNGKQAKKQESEEEEDDSDEEAEDQKPIK 106
Query: 116 -VPTSRRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGRSVRN 174
P +++ AV+ + + E ED+DD + KA TPA P+ + + +
Sbjct: 107 NKPVAKK---AVAKKEESE----EDDDDEDESEEEKAVAKKPTPAKKPAGKKQESEEEDD 159
Query: 175 KTEISDGTSVQKAYSTRRSVRLVGKSLSKMSLADTEDMESTKNDDVSEEMSVSQNEGGS 233
+ + V A L GK K + A ED E +DD ++ + +G +
Sbjct: 160 EESEDEPMEVAPA--------LKGK---KTAQAAEEDDEEEDDDDEEDDDDEEEQQGSA 207
>VG01_ICHV1 (Q00132) Hypothetical gene 1 protein
Length = 862
Score = 34.7 bits (78), Expect = 0.24
Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 18/219 (8%)
Query: 22 ANITNVAMADALSALPHVEGLDEILNQREGGDIGTPAVQPRTARRTTTQRKPVKEAESTK 81
+++T VA A+ A E +G D A P+ R + K+ + +
Sbjct: 617 SDVTEVAKVHAIKAKVRAEQKAS-KESAKGEDAAKKA--PKRKREAEAGTETPKKKQKEE 673
Query: 82 VSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAVVPTSRRRVPAVSTRRKKEVIVIEDED 141
S + + G+ + G + + + TP T+++ V +VS + V DE
Sbjct: 674 KSEKPKKTGKAEKSTGTAKVTKKE-KTEKKTPQTKSTNKKNVKSVSA--EAGTAVTPDE- 729
Query: 142 DVVSEVQGKATDVAKTPAAAPSSRTRAGRSVRNKTEISDGT----SVQKAYSTRRSVRLV 197
+ + K+T V K +A + + R+ K + + S +K Y ++ V
Sbjct: 730 ---ANGKKKSTQVKKKESAGQHTTEKKKRTAAKKKTVDRPSGHRPSSKKEYRSQEFVSSD 786
Query: 198 GKS----LSKMSLADTEDMESTKNDDVSEEMSVSQNEGG 232
S +SK + TE+M+STK ++ M ++ G
Sbjct: 787 DSSDEEVISKPRVTTTENMKSTKKATLASNMDDDGDDDG 825
>STF_LAMBD (P03764) Side tail fiber protein
Length = 774
Score = 34.3 bits (77), Expect = 0.31
Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 10/150 (6%)
Query: 99 VEQENLDANVDAG--------TPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDVVSEVQGK 150
V Q DA AG A+V + A ST + ++ K
Sbjct: 120 VAQSTADAKKSAGDASASAAQVAALVTDATDSARAASTSAGQAASSAQEASSGAEAASAK 179
Query: 151 ATDVAKTPAAAPSSRTRAGRSV-RNKTEISDGTSVQKAYSTRRSVRLVGKSLSKMSLAD- 208
AT+ K+ AAA SS+ A S KT ++ + Q++ +T S S + S D
Sbjct: 180 ATEAEKSAAAAESSKNAAATSAGAAKTSETNAAASQQSAATSASTAATKASEAATSARDA 239
Query: 209 TEDMESTKNDDVSEEMSVSQNEGGSIETEN 238
E+ K+ + + S + + EN
Sbjct: 240 VASKEAAKSSETNASSSAGRAASSATAAEN 269
>B3A3_HUMAN (P48751) Anion exchange protein 3 (Neuronal band 3-like
protein) (Cardiac/brain band 3-like protein) (CAE3/BAE3)
Length = 1232
Score = 34.3 bits (77), Expect = 0.31
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 34/185 (18%)
Query: 61 PRTARRTTTQRKPVK-EAESTKVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAVVPTS 119
P +AR T +RK K A ++ + + G GV E E E+E + +A P P S
Sbjct: 100 PTSARHTRRKRKKEKTSAPPSEGTPPIQEEGGAGVDEEEEEEEEEEGESEA-EPVEPPPS 158
Query: 120 RRRVPAVSTRRKKEVIVIEDEDD---------VVSEVQGKATDVAKTP---AAAPSSRTR 167
T +K + + DEDD V + K+P +++PS R R
Sbjct: 159 -------GTPQKAKFSIGSDEDDSPGLPGRAAVTKPLPSVGPHTDKSPQHSSSSPSPRAR 211
Query: 168 AGRSVRNKT-------------EISDGTSVQKAYSTRRSVRLVGKSLSKMSLADTEDMES 214
A R K+ + G+++ + V + AD +DM+S
Sbjct: 212 ASRLAGEKSRPWSPSASYDLRERLCPGSALGNPGGPEQQVPTDEAEAQMLGSADLDDMKS 271
Query: 215 TKNDD 219
+ +D
Sbjct: 272 HRLED 276
>ZN46_HUMAN (P24278) Zinc finger protein 46 (Zinc finger protein
KUP) (Zinc finger and BTB domain containing protein 25)
Length = 433
Score = 33.9 bits (76), Expect = 0.41
Identities = 26/93 (27%), Positives = 43/93 (45%), Gaps = 11/93 (11%)
Query: 67 TTTQRKPVKEAESTKVSTRVNRGGRGGVAEGEVEQENLDANVDAGT-------PAVVPTS 119
+TTQ+ VK+ K + N G R V +G++ Q +L +D GT PA
Sbjct: 134 STTQKTVVKQGLEVKEAPSSNSGNRAAV-QGDLPQLSLAIGLDDGTADQQRACPATQALE 192
Query: 120 RRRVPAVSTRRKK---EVIVIEDEDDVVSEVQG 149
+ P VS ++++ E ++ + SEV G
Sbjct: 193 EHQKPPVSIKQERCDPESVISQSHPSPSSEVTG 225
>SAG1_YEAST (P20840) Alpha-agglutinin precursor (AG-alpha-1)
Length = 650
Score = 33.9 bits (76), Expect = 0.41
Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 25/250 (10%)
Query: 10 ELQALSKMNKIPANITNVAMA-----DALSALPHVEGLDEILNQRE-----GGDIGTPAV 59
E+ ++ + +PAN+ + A L + + + RE G ++GT +
Sbjct: 273 EMLWVNALQSLPANVNTIDHALEFQYTCLDTIANTTYATQFSTTREFIVYQGRNLGTASA 332
Query: 60 QPRTARRTTTQRKPVK-EAESTKVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAVVPT 118
+ TTT + A ST + V G R EV + + A
Sbjct: 333 KSSFISTTTTDLTSINTSAYSTGSISTVETGNR---TTSEVISHVVTTSTKLSPTATTSL 389
Query: 119 SRRRVPAVSTRRKKEVIV-IEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGRSVRNKTE 177
+ + ST V I +V+S+V+ + + A T AAP+S T G + T
Sbjct: 390 TIAQTSIYSTDSNITVGTDIHTTSEVISDVETISRETASTVVAAPTSTT--GWTGAMNTY 447
Query: 178 ISDGTSVQKAYSTRRSVRLVGKSLSKMSLADTED--MESTKNDDVSEEMSVSQNEGGSIE 235
IS TS +++T S ++ S ++ +T D + + ++++ +V E +
Sbjct: 448 ISQFTS--SSFATINSTPIISSS----AVFETSDASIVNVHTENITNTAAVPSEEPTFVN 501
Query: 236 TENGMLISLC 245
L S C
Sbjct: 502 ATRNSLNSFC 511
>RECR_BRUSU (Q8G3B7) Recombination protein recR
Length = 201
Score = 33.9 bits (76), Expect = 0.41
Identities = 32/107 (29%), Positives = 44/107 (40%), Gaps = 20/107 (18%)
Query: 37 PHVEGLDEILNQREGGDIGTPAVQPRTARRTTTQRKPVKEAESTKVSTRVNRGGRGGVAE 96
P +E L ++L + P + PR+ARR KEA V GG A
Sbjct: 8 PEIERLIQLLAR-------VPGLGPRSARRAALHLIKKKEA------LLVPLGGAMQEAA 54
Query: 97 GEVEQENLDANVDAGTPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDV 143
+V + NVD P + T RR PA +IV+ED D+
Sbjct: 55 EKVRICSCCGNVDTSDPCTICTDERRDPAT-------LIVVEDVSDL 94
>RECR_BRUME (Q8YEG8) Recombination protein recR
Length = 201
Score = 33.9 bits (76), Expect = 0.41
Identities = 32/107 (29%), Positives = 44/107 (40%), Gaps = 20/107 (18%)
Query: 37 PHVEGLDEILNQREGGDIGTPAVQPRTARRTTTQRKPVKEAESTKVSTRVNRGGRGGVAE 96
P +E L ++L + P + PR+ARR KEA V GG A
Sbjct: 8 PEIERLIQLLAR-------VPGLGPRSARRAALHLIKKKEA------LLVPLGGAMQEAA 54
Query: 97 GEVEQENLDANVDAGTPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDV 143
+V + NVD P + T RR PA +IV+ED D+
Sbjct: 55 EKVRICSCCGNVDTSDPCTICTDERRDPAT-------LIVVEDVSDL 94
>RL23_MYCPN (P75578) 50S ribosomal protein L23
Length = 237
Score = 32.7 bits (73), Expect = 0.90
Identities = 34/138 (24%), Positives = 58/138 (41%), Gaps = 16/138 (11%)
Query: 57 PAVQPRTARRTTTQRKPVKEAESTKVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAVV 116
P + A +TT + VKE + TK S V + VE + P
Sbjct: 98 PEKTDKPADKTTLKESTVKEIKDTKNSPEA-------VVKTAVEALQIK-------PTAA 143
Query: 117 PTSRRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSR-TRAGRSVRNK 175
P + + V+ + KEV ++ E V E K VAK ++ T+A +SV+
Sbjct: 144 PVTTAPLQTVAVKVAKEVKEVKVEKPVKVEKPTKPAKVAKEAKTTKVAKETKAEKSVQT- 202
Query: 176 TEISDGTSVQKAYSTRRS 193
T+++ T +K+ T ++
Sbjct: 203 TKVAKETKTEKSAKTTKT 220
>K501_ACTCH (P43393) Fruit protein PKIWI501
Length = 184
Score = 32.7 bits (73), Expect = 0.90
Identities = 38/145 (26%), Positives = 54/145 (37%), Gaps = 22/145 (15%)
Query: 24 ITNVAMADALSALPHVEGLDEILNQREGGDIGTPAVQPRTARRTTTQRKPVK----EAES 79
+ V + A++ALP E DE+ +E A P A T + + EA
Sbjct: 1 MATVEVTPAVTALPENETADEVTKPQEPQPEAAVAAPPAPAEPVTEEPEKAAPEAVEAPE 60
Query: 80 TKVSTRVNRGGRGGVAEGEVEQENLDANVDAGTPAVVPTSRRRVPAVSTRRKKEVIVIED 139
+T AE EV +E P VP V+ KEV E
Sbjct: 61 EPAATDAKDPAEVAEAEEEVVEE----------PQEVPEE-----PVAEAAAKEVEATEG 105
Query: 140 EDDVVSEVQGK---ATDVAKTPAAA 161
+ + E++ K ATD + PAAA
Sbjct: 106 KAEPTGEMKDKTPEATDAPEAPAAA 130
>FMKC_ECOLI (P14190) K88 fimbrial protein AC precursor (K88 pilin)
(K88 antigen)
Length = 283
Score = 32.3 bits (72), Expect = 1.2
Identities = 41/160 (25%), Positives = 66/160 (40%), Gaps = 37/160 (23%)
Query: 73 PVKEAESTKV-STRVNRG-----GRGGV--AEGEVEQ---ENLDANVDAGTPAVVPTSRR 121
P+K AE TKV S +VN GRGGV A+GE+ + L + G P S
Sbjct: 134 PMKNAEGTKVGSVKVNASYAGVLGRGGVTSADGELLSLFADGLSSIFYGGLPRGSELSAG 193
Query: 122 RVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGRSVRNKTEISDG 181
A T+ + +D++ ++Q ++ +S S R E +DG
Sbjct: 194 SAAAARTKLFGSL----SRNDILGQIQRVNANI--------TSLVDVAGSYRENMEYTDG 241
Query: 182 TSVQKAYSTRRSVRLVGKSLSKMSLADTEDMESTKNDDVS 221
T V AY+ + +A+ + +E+T N V+
Sbjct: 242 TVVSAAYA--------------LGIANGQTIEATFNQAVT 267
>CINA_ELEEL (P02719) Sodium channel protein (Na(+) channel)
Length = 1820
Score = 32.3 bits (72), Expect = 1.2
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 120 RRRVPAVSTRRKKEVIVIEDEDDVVSEVQGKATDVAKTPAAAPSSRTRAGRSVRNKTE-- 177
R+ A + +E + +D DD + E GK A P + R SV+ TE
Sbjct: 441 RKASLASQLTQNQEAEITDDGDDAIKECNGK---------AFPLANIREPSSVKLSTEEQ 491
Query: 178 ISDGTSVQKAYSTRRSVRLVGKSLSKMSLADTEDMESTK 216
SD S+ +S + L K+ S MS+ ED+E+ +
Sbjct: 492 RSDSKSMDSKHSVDKP-SLKHKAASTMSVFTLEDLEAAR 529
>VE2_HPV24 (P50770) Regulatory protein E2
Length = 467
Score = 32.0 bits (71), Expect = 1.5
Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 3/146 (2%)
Query: 87 NRGGRGGVAEGEVEQENLDANVDAGTPAVVPTSRRRVPAVSTRRKKEVIVIEDEDDVVSE 146
NR + G E + +E + A V + TP P R +P ST K + S+
Sbjct: 177 NRYSKSGQWEVRINKETVFAPVTSSTPPDSPGGSRELPG-STANSKASSPTQQPQQACSD 235
Query: 147 VQGKATDVAKTPAAAPSSRTRAGRSVRNKTEISDGTSVQKAYSTRRSVRLVGKSLSKMSL 206
K + ++ SR R S R K + S + S S + +S S+ S
Sbjct: 236 ETTKRKRYGRRESSPTDSRCRRRSSSRQKKQGRRARS--RTRSRCSSTQTRSRSTSRRSR 293
Query: 207 ADTEDMESTKNDDVSEEMSVSQNEGG 232
+ + + D + VS + G
Sbjct: 294 STSRGNRRCRGDTPRGQRGVSTSSRG 319
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.126 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,152,962
Number of Sequences: 164201
Number of extensions: 1078444
Number of successful extensions: 3439
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 3418
Number of HSP's gapped (non-prelim): 89
length of query: 260
length of database: 59,974,054
effective HSP length: 108
effective length of query: 152
effective length of database: 42,240,346
effective search space: 6420532592
effective search space used: 6420532592
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC144806.1