BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144766.5 + phase: 0
(393 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC3A_CAEEL (P34257) Transposable element Tc3 transposase 35 0.43
HEMZ_STRR6 (Q8DQ04) Ferrochelatase (EC 4.99.1.1) (Protoheme ferr... 34 0.56
HEMZ_STRPN (Q97R30) Ferrochelatase (EC 4.99.1.1) (Protoheme ferr... 34 0.56
SEC6_YEAST (P32844) Exocyst complex component SEC6 32 2.8
MSP1_PLAFP (P50495) Merozoite surface protein 1 precursor (Meroz... 32 2.8
MSP1_PLAFC (P04934) Merozoite surface protein 1 precursor (Meroz... 32 2.8
GSH1_STRMU (Q8DW15) Probable glutamate--cysteine ligase (EC 6.3.... 32 2.8
ACCA_SALTY (P40674) Acetyl-coenzyme A carboxylase carboxyl trans... 32 3.7
RS6_RICPR (Q9ZEA6) 30S ribosomal protein S6 31 4.8
PURL_METJA (Q58660) Phosphoribosylformylglycinamidine synthase I... 31 4.8
TOP2_SCHPO (P08096) DNA topoisomerase II (EC 5.99.1.3) 31 6.2
RS6_RICCN (Q92JK3) 30S ribosomal protein S6 31 6.2
ACCA_ECOLI (P30867) Acetyl-coenzyme A carboxylase carboxyl trans... 31 6.2
VE1_PAPVE (P11328) Replication protein E1 30 8.2
SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondr... 30 8.2
SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chon... 30 8.2
SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chon... 30 8.2
SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chon... 30 8.2
IF3_SYNY3 (P72874) Translation initiation factor IF-3 30 8.2
ICA1_MOUSE (P13597) Intercellular adhesion molecule-1 precursor ... 30 8.2
>TC3A_CAEEL (P34257) Transposable element Tc3 transposase
Length = 329
Score = 34.7 bits (78), Expect = 0.43
Identities = 27/102 (26%), Positives = 48/102 (46%), Gaps = 8/102 (7%)
Query: 254 QQDNAKTHIDSEDQDFRCVASQNGFDIRLVRQPPNSPDLNVLD--LGFFRSIQALQHKKS 311
QQDNA H+ + +D+ + I L+ P SPDLN ++ G I Q+K
Sbjct: 229 QQDNATIHVSNSTRDYFKLKK-----INLLDWPARSPDLNPIENLWGILVRIVYAQNKTY 283
Query: 312 PNSVDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKG 353
P +V L + +++ + S++ +IEI++ +G
Sbjct: 284 P-TVASLKQGILDAWKSIPDNQLKSLVRSMEDRLIEIIRTQG 324
>HEMZ_STRR6 (Q8DQ04) Ferrochelatase (EC 4.99.1.1) (Protoheme
ferro-lyase) (Heme synthetase)
Length = 364
Score = 34.3 bits (77), Expect = 0.56
Identities = 29/133 (21%), Positives = 60/133 (44%), Gaps = 13/133 (9%)
Query: 251 IFIQQDNAKTHIDSE-DQDFRCVASQNGFDIRLVRQPPNSPDLNVLDLGFFRSIQALQHK 309
IF+ HI+ D D C F + R P + D ++D +++ +++
Sbjct: 238 IFVPISFISEHIEVLFDNDVECYDLCQEFGVNYHRPPMPNTDSRLID-ALVNTVRVNENQ 296
Query: 310 K------SPNSVDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTHNYKIPHMK 363
+ + D+LV + +E IL+ L + + ++++ KG N K+P++
Sbjct: 297 EFKEFLPEEETFDELVPS-----DETKNILAESEDLQMPEFVKKLIEKKGRENVKMPYLI 351
Query: 364 KEQLERRKELPTQ 376
K+ LE+ +LP +
Sbjct: 352 KKMLEKAGKLPKE 364
>HEMZ_STRPN (Q97R30) Ferrochelatase (EC 4.99.1.1) (Protoheme
ferro-lyase) (Heme synthetase)
Length = 364
Score = 34.3 bits (77), Expect = 0.56
Identities = 29/133 (21%), Positives = 60/133 (44%), Gaps = 13/133 (9%)
Query: 251 IFIQQDNAKTHIDSE-DQDFRCVASQNGFDIRLVRQPPNSPDLNVLDLGFFRSIQALQHK 309
IF+ HI+ D D C F + R P + D ++D +++ +++
Sbjct: 238 IFVPISFISEHIEVLFDNDVECYDLCQEFGVNYHRPPMPNTDSRLID-ALVNTVRVNENQ 296
Query: 310 K------SPNSVDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTHNYKIPHMK 363
+ + D+LV + +E IL+ L + + ++++ KG N K+P++
Sbjct: 297 EFKEFLPEEETFDELVPS-----DETKNILAESQDLQMPEFVKKLIEKKGRENVKMPYLI 351
Query: 364 KEQLERRKELPTQ 376
K+ LE+ +LP +
Sbjct: 352 KKMLEKAGKLPKE 364
>SEC6_YEAST (P32844) Exocyst complex component SEC6
Length = 805
Score = 32.0 bits (71), Expect = 2.8
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 45 VVDLDRVRDIPLKKRT-TIRDLSEALDVSRGTLSRCIRSKEIRKNSNAIKPALTEGNKAR 103
+V++ R I L R I DL E D+ + I+ KEI ++IK N AR
Sbjct: 199 IVEMARAEQISLAIRLFKIYDLEEREDLRIEAIRNIIKKKEIEIEKSSIKKLPNSKNTAR 258
Query: 104 LQFCISMLDSASIDHDPIFKGMYNTV 129
LQ ++ + P KG+Y +
Sbjct: 259 LQD-----ETPKVIEYPTNKGLYQEI 279
>MSP1_PLAFP (P50495) Merozoite surface protein 1 precursor
(Merozoite surface antigens) (PMMSA) (GP195)
Length = 1726
Score = 32.0 bits (71), Expect = 2.8
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 16 VQRIWKLAENKGVHADVSSKRAGNCGRKRVVDLDRVRDIPLKKRTTIRDLSEALDVSRGT 75
+ I +L E D + G+K++ I K+ +L L+ T
Sbjct: 276 IANINELIEGSKKTIDQNKNADNEEGKKKLYQAQYDLSIYNKQLEEAHNLISVLEKRIDT 335
Query: 76 LSRCIRSKEIRKNSNAIK--PALTEGNKARLQFCISMLDSASI--DHDPIFKGMYNTVHI 131
L + KE+ N IK P GN ++LD +H+ K + T+
Sbjct: 336 LKKNENIKELLDKINEIKNPPPANSGNTPN-----TLLDKNKKIEEHEEKIKEIAKTIKF 390
Query: 132 D---------EKWFYLKEKSKKFYLVHDEEDPIFSCQSKNYIPKIMFLVAIARP 176
+ E +YL+EK+KK + +DP S Q IPK+ + I P
Sbjct: 391 NIDSLFTDPLELEYYLREKNKKVDVTPKSQDPTKSVQ----IPKVPYPNGIVYP 440
>MSP1_PLAFC (P04934) Merozoite surface protein 1 precursor
(Merozoite surface antigens) (PMMSA) (P195)
Length = 1726
Score = 32.0 bits (71), Expect = 2.8
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 16 VQRIWKLAENKGVHADVSSKRAGNCGRKRVVDLDRVRDIPLKKRTTIRDLSEALDVSRGT 75
+ I +L E D + G+K++ I K+ +L L+ T
Sbjct: 276 IANINELIEGSKKTIDQNKNADNEEGKKKLYQAQYDLSIYNKQLEEAHNLISVLEKRIDT 335
Query: 76 LSRCIRSKEIRKNSNAIK--PALTEGNKARLQFCISMLDSASI--DHDPIFKGMYNTVHI 131
L + KE+ N IK P GN ++LD +H+ K + T+
Sbjct: 336 LKKNENIKELLDKINEIKNPPPANSGNTPN-----TLLDKNKKIEEHEEKIKEIAKTIKF 390
Query: 132 D---------EKWFYLKEKSKKFYLVHDEEDPIFSCQSKNYIPKIMFLVAIARP 176
+ E +YL+EK+KK + +DP S Q IPK+ + I P
Sbjct: 391 NIDSLFTDPLELEYYLREKNKKVDVTPKSQDPTKSVQ----IPKVPYPNGIVYP 440
>GSH1_STRMU (Q8DW15) Probable glutamate--cysteine ligase (EC
6.3.2.2) (Gamma-glutamylcysteine synthetase) (Gamma-ECS)
(GCS)
Length = 754
Score = 32.0 bits (71), Expect = 2.8
Identities = 22/74 (29%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
Query: 306 LQHKKSPNSVDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIM---KVKGTHNYKIPHM 362
++H K P+ DDL+ A++K E LS R+F ++ +E K + HNY +
Sbjct: 358 IKHFKLPSYYDDLLIAIKKQVENPKLTLSGRLFEHIKHASLEHFGQKKGQDYHNYAWQNY 417
Query: 363 KKEQLERRKELPTQ 376
+ EL TQ
Sbjct: 418 YALKGYENMELSTQ 431
>ACCA_SALTY (P40674) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha (EC 6.4.1.2)
Length = 318
Score = 31.6 bits (70), Expect = 3.7
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 296 DLGFFRSIQALQHKKSPNSVDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTH 355
DLG ++ Q +H + P ++D V+ +F+E+D + +R + ++ + I +++G
Sbjct: 56 DLGAWQVAQLARHPQRPYTLD----YVRLAFDEFDELAGDRAYADDKAIVGGIARLEGRP 111
Query: 356 NYKIPHMK----KEQLERRKELP 374
I H K KE++ R +P
Sbjct: 112 VMIIGHQKGRETKEKIRRNFGMP 134
>RS6_RICPR (Q9ZEA6) 30S ribosomal protein S6
Length = 121
Score = 31.2 bits (69), Expect = 4.8
Identities = 20/81 (24%), Positives = 39/81 (47%), Gaps = 4/81 (4%)
Query: 297 LGFFRSIQALQHKKSPNSVDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTHN 356
+ F+ S+ ++ S N +D +VD K ++ + + + + L++ +I K H
Sbjct: 1 MSFYESVFIIRQDVSLNDIDKIVDDFTKIIKDNNGTIIKKEYWGLRTLAYKIGNNKKGHY 60
Query: 357 Y----KIPHMKKEQLERRKEL 373
Y I KE+LER+ +L
Sbjct: 61 YFLGIDITSNVKEELERKMKL 81
>PURL_METJA (Q58660) Phosphoribosylformylglycinamidine synthase II
(EC 6.3.5.3) (FGAM synthase II)
Length = 733
Score = 31.2 bits (69), Expect = 4.8
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 41 GRKRVVDLDRVRDIPLKKRTTIRD--LSEALDVSRGTLSRCIRSKEIRKNSNAIKPALTE 98
GR VDL++ + I + R +++ +SEA+D SRG L+ + +K N+ ++ LTE
Sbjct: 593 GRVPRVDLEKEKKIYEEVREVVKEGLVSEAVDCSRGGLAVAL-AKMAVLNNIGLEVDLTE 651
Query: 99 GNKARLQFCISMLDSAS 115
NK L+ I + S
Sbjct: 652 YNKNNLRDDILLFSETS 668
>TOP2_SCHPO (P08096) DNA topoisomerase II (EC 5.99.1.3)
Length = 1485
Score = 30.8 bits (68), Expect = 6.2
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 150 DEEDPIFSCQSKNYIPKIMFLVAIARPRFDAQGKEIFSGKIGAF 193
+++ P+ + Q KNY+ ++ I P FD+Q KE + K+ AF
Sbjct: 391 NKKAPVKAFQIKNYV-QVFVNCQIENPSFDSQTKETLTTKVSAF 433
>RS6_RICCN (Q92JK3) 30S ribosomal protein S6
Length = 121
Score = 30.8 bits (68), Expect = 6.2
Identities = 20/81 (24%), Positives = 39/81 (47%), Gaps = 4/81 (4%)
Query: 297 LGFFRSIQALQHKKSPNSVDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTHN 356
+ F+ S+ ++ S N +D +VD K ++ + + + + L++ +I K H
Sbjct: 1 MSFYESVFIIRQDVSLNDIDKIVDDFAKIIKDNNGTIIKKEYWGLRTLAYKIGNNKKGHY 60
Query: 357 Y----KIPHMKKEQLERRKEL 373
Y I KE+LER+ +L
Sbjct: 61 YFLGLDITGNVKEELERKMKL 81
>ACCA_ECOLI (P30867) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha (EC 6.4.1.2)
Length = 318
Score = 30.8 bits (68), Expect = 6.2
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 296 DLGFFRSIQALQHKKSPNSVDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTH 355
DLG ++ Q +H + P ++D V+ +F+E+D + +R + ++ + I ++ G
Sbjct: 56 DLGAWQIAQLARHPQRPYTLD----YVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRP 111
Query: 356 NYKIPHMK----KEQLERRKELP 374
I H K KE++ R +P
Sbjct: 112 VMIIGHQKGRETKEKIRRNFGMP 134
>VE1_PAPVE (P11328) Replication protein E1
Length = 611
Score = 30.4 bits (67), Expect = 8.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 129 VHIDEKWFYLKEKSKKFYL-----VHDEEDPIF 156
VH DEK+FYL+ + K FY D +P+F
Sbjct: 531 VHADEKYFYLQSRVKTFYFKEPCPASDTGEPLF 563
>SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondroitin
sulfate proteoglycan 6) (Chromosome segregation protein
SmcD) (Bamacan) (Basement membrane-associated chondroitin
proteoglycan)
Length = 1191
Score = 30.4 bits (67), Expect = 8.2
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 315 VDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTHNYKIPHMKKEQLERRKELP 374
+ +L Q++FE+Y T+ ++F L+ C E+ K + + ++ K +
Sbjct: 943 IRELGSLPQEAFEKYQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIK 1002
Query: 375 TQRKCD--IQLVQEVLSYLD 392
Q + D + + E+++ L+
Sbjct: 1003 RQEELDRGYKSIMELMNVLE 1022
>SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3
(Chondroitin sulfate proteoglycan 6) (Chromosome
segregation protein SmcD) (Bamacan) (Basement
membrane-associated chondroitin proteoglycan) (Mad
member-interacting protein 1)
Length = 1217
Score = 30.4 bits (67), Expect = 8.2
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 315 VDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTHNYKIPHMKKEQLERRKELP 374
+ +L Q++FE+Y T+ ++F L+ C E+ K + + ++ K +
Sbjct: 943 IRELGSLPQEAFEKYQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIK 1002
Query: 375 TQRKCD--IQLVQEVLSYLD 392
Q + D + + E+++ L+
Sbjct: 1003 RQEELDRGYKSIMELMNVLE 1022
>SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3
(Chondroitin sulfate proteoglycan 6)
(Chromosome-associated polypeptide) (hCAP) (Bamacan)
(Basement membrane-associated chondroitin proteoglycan)
Length = 1217
Score = 30.4 bits (67), Expect = 8.2
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 315 VDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTHNYKIPHMKKEQLERRKELP 374
+ +L Q++FE+Y T+ ++F L+ C E+ K + + ++ K +
Sbjct: 943 IRELGSLPQEAFEKYQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIK 1002
Query: 375 TQRKCD--IQLVQEVLSYLD 392
Q + D + + E+++ L+
Sbjct: 1003 RQEELDRGYKSIMELMNVLE 1022
>SMC3_BOVIN (O97594) Structural maintenance of chromosome 3
(Chondroitin sulfate proteoglycan 6)
Length = 1218
Score = 30.4 bits (67), Expect = 8.2
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 315 VDDLVDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTHNYKIPHMKKEQLERRKELP 374
+ +L Q++FE+Y T+ ++F L+ C E+ K + + ++ K +
Sbjct: 943 IRELGSLPQEAFEKYQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIK 1002
Query: 375 TQRKCD--IQLVQEVLSYLD 392
Q + D + + E+++ L+
Sbjct: 1003 RQEELDRGYKSIMELMNVLE 1022
>IF3_SYNY3 (P72874) Translation initiation factor IF-3
Length = 177
Score = 30.4 bits (67), Expect = 8.2
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 253 IQQDNAKTHIDSEDQDFRCVASQNGFDIRLVRQPPNSPDLNVLDLG---FFRSIQALQHK 309
I D A+ I + ++ +A + G D+ LV + + P ++D G F + +A + K
Sbjct: 26 IDSDGAQLGIITPNEAME-IADERGLDLVLVSETADPPVCRIMDYGKYKFEQEKKAREAK 84
Query: 310 KSPNSVDDLVDAVQKSFEEYD---TILSNRIFLSLQSCMIEIMKVKGTHNYK-----IPH 361
K ++ D ++ +E+D I + FL KVK T N++ H
Sbjct: 85 KKQHTADVKEVKMRYKIDEHDYQVRINQAKRFLKAGD------KVKATVNFRGREIQHAH 138
Query: 362 MKKEQLER 369
+ KE L+R
Sbjct: 139 LAKELLDR 146
>ICA1_MOUSE (P13597) Intercellular adhesion molecule-1 precursor
(MALA-2)
Length = 537
Score = 30.4 bits (67), Expect = 8.2
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 309 KKSPNSVDDL-VDAVQKSFEEYDTILSNRIFLSLQSCMIEIMKVKGTHNYKIPHMKKEQL 367
++S NS D + A+ + EE+D L R L L ++E + +N+ P + QL
Sbjct: 263 QESTNSSDSVSATALVEVTEEFDRTLPLRCVLELADQILETQRTLTVYNFSAPVLTLSQL 322
Query: 368 ERRKELPTQRKCD 380
E + KC+
Sbjct: 323 EVSEGSQVTVKCE 335
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,240,319
Number of Sequences: 164201
Number of extensions: 1841438
Number of successful extensions: 4588
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4585
Number of HSP's gapped (non-prelim): 25
length of query: 393
length of database: 59,974,054
effective HSP length: 112
effective length of query: 281
effective length of database: 41,583,542
effective search space: 11684975302
effective search space used: 11684975302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC144766.5