BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144765.10 - phase: 0
(552 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 310 6e-84
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 297 5e-80
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 280 5e-75
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 272 1e-72
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 254 4e-67
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 251 3e-66
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 251 3e-66
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 250 6e-66
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 246 1e-64
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 202 2e-51
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 202 2e-51
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 199 2e-50
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 197 5e-50
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 195 2e-49
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 192 2e-48
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 179 2e-44
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 170 8e-42
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 154 6e-37
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 152 3e-36
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 150 1e-35
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 310 bits (794), Expect = 6e-84
Identities = 162/432 (37%), Positives = 262/432 (60%), Gaps = 8/432 (1%)
Query: 117 VVNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDK 176
++ ++H++ E + + + +I+ L S Y + + E++ Q++D+L++
Sbjct: 176 LLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKYSYPQAYEQ--EVESQIQDMLNQ 233
Query: 177 KFVRPSVSPWGAPVLLV-KKKDGS----MRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLV 231
+R S SP+ +P+ +V KK+D S R+ IDYR+LN++T+ +R+P+P +D+++ +L
Sbjct: 234 GIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLG 293
Query: 232 GAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIF 291
F+ IDL G+HQI++ E + KTAF T++GHYEY MPFG+ NAP F MN I
Sbjct: 294 RCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDIL 353
Query: 292 HAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGH 351
L+K +V++DDI+++S +EH + L +V + L + L +L KCEF E +FLGH
Sbjct: 354 RPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGH 413
Query: 352 VTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKG 411
V + +GI +P K++A+ ++ P EI++FLGL GYYR+FI F+ +A P+T+ K
Sbjct: 414 VLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKN 473
Query: 412 -KSFVWDAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAY 470
K + + +S+F +LK ++ PIL +P + F + DAS LG VL QDG ++Y
Sbjct: 474 MKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSY 533
Query: 471 ASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQ 530
SR L HE N T + EL A+V+ K +RHYL G FE+ SDH+ L +L+ K+ N +
Sbjct: 534 ISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKL 593
Query: 531 RRWLELLKDYDF 542
RW L ++DF
Sbjct: 594 TRWRVKLSEFDF 605
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 297 bits (760), Expect = 5e-80
Identities = 169/500 (33%), Positives = 275/500 (54%), Gaps = 12/500 (2%)
Query: 54 LEYNRVCINCFNKTVHFSSAEEESGAQFL---TTKQLKQLERDGI--LMFSLMASLSLEN 108
+ Y + F++T ++E E T + + +++ I L FS L
Sbjct: 106 INYKNDTVTLFDQTYKLITSESERNQNLYIQRTPESIASSDQESIKKLDFSQFRLDHLNQ 165
Query: 109 QVVIDRLPVVNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKK 168
+ ++N+F + E + ++ ++ + + S Y ++ + E++
Sbjct: 166 EETFKLKGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIYSKQ-YPLAQTHEIEVEN 224
Query: 169 QLEDLLDKKFVRPSVSPWGAPVLLVKKKDGSM-----RLCIDYRQLNKVTIKNRYPLPRI 223
Q++++L++ +R S SP+ +P +V KK + R+ IDYR+LN++TI +RYP+P +
Sbjct: 225 QVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNM 284
Query: 224 DDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVF 283
D+++ +L + F+ IDL G+HQI++ +E + KTAF T+ GHYEY MPFG+ NAP F
Sbjct: 285 DEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATF 344
Query: 284 MEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWL 343
MN I L+K +V++DDI+I+S EH +++V L + L +L KCEF
Sbjct: 345 QRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLK 404
Query: 344 SEVSFLGHVTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALP 403
E +FLGH+ + +GI +P KV A+ + P EIR+FLGL GYYR+FI ++ +A P
Sbjct: 405 KEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKP 464
Query: 404 LTQ-LTYKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLM 462
+T L + K + +F +LK + PIL LP E+ FV+ DAS LG VL
Sbjct: 465 MTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLS 524
Query: 463 QDGKVVAYASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFD 522
Q+G +++ SR L HE N + EL A+V+ K +RHYL G +F + SDH+ L++L +
Sbjct: 525 QNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHN 584
Query: 523 QKELNMRQRRWLELLKDYDF 542
KE + RW L +Y F
Sbjct: 585 LKEPGAKLERWRVRLSEYQF 604
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 280 bits (717), Expect = 5e-75
Identities = 152/436 (34%), Positives = 248/436 (56%), Gaps = 11/436 (2%)
Query: 117 VVNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDK 176
V+ +F +VF ++ E I+L GA+ + P + + E++K ++ +L++
Sbjct: 909 VIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQ 968
Query: 177 KFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVF 236
K +R S SPW +PV+LVKKKDGS+R+CIDYR++NKV N +PLP I+ + L G K++
Sbjct: 969 KVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLY 1028
Query: 237 SKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLD 296
+ D+ +G+ QI + ++ + TAF +E+ V+PFG+ +P +F M I L
Sbjct: 1029 TVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLG 1088
Query: 297 KFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGN 356
V++DD+LI SK E+H + +K L +++ + + SKC EV +LGH + +
Sbjct: 1089 VCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLD 1148
Query: 357 GIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVW 416
G+ K D + Q+ P +V E++SFLGL GYYR+FI F+++A LT L +++W
Sbjct: 1149 GVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIW 1208
Query: 417 DAQCESSFNELKQRLTTAPILILP------KPEEPFVVYCDASKFGLGGVLMQDG----- 465
+ + E +F ELK+ + P+L P K + PF++Y DAS+ G+G VL Q+G
Sbjct: 1209 EKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQ 1268
Query: 466 KVVAYASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKE 525
+A+AS+ L E DLE A++F L+ ++ +YG+ VF+DHK L L
Sbjct: 1269 HPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSP 1328
Query: 526 LNMRQRRWLELLKDYD 541
L R RW + ++D
Sbjct: 1329 LADRLWRWSIEILEFD 1344
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 272 bits (696), Expect = 1e-72
Identities = 152/446 (34%), Positives = 253/446 (56%), Gaps = 22/446 (4%)
Query: 117 VVNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDK 176
++ EF +F + + E V+ I + + + Y + E+++Q+++LL
Sbjct: 91 LLGEFPRIFEPPLSGMSVETAVKAEIRTNTQDPIYAKS-YPYPVNMRGEVERQIDELLQD 149
Query: 177 KFVRPSVSPWGAPVLLVKKK-----DGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLV 231
+RPS SP+ +P+ +V KK + R+ +D+++LN VTI + YP+P I+ + L
Sbjct: 150 GIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLG 209
Query: 232 GAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIF 291
AK F+ +DL SG+HQI +K+ D+ KTAF T G YE+ +PFG+ NAP +F ++ I
Sbjct: 210 NAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDIL 269
Query: 292 HAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGH 351
+ K V+IDDI+++S+ + H K+L++VL L + L L K F ++V FLG+
Sbjct: 270 REHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGY 329
Query: 352 VTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKG 411
+ + +GI DP KV A+S+ P SV E++ FLG+ YYR+FI+ ++K+A PLT LT
Sbjct: 330 IVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGL 389
Query: 412 KSFVWDAQCE-----------SSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGV 460
+ + +Q SFN+LK L ++ IL P +PF + DAS + +G V
Sbjct: 390 YANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAV 449
Query: 461 LMQD----GKVVAYASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGS-RFEVFSDHK 515
L QD + +AY SR L E+N T + E+ A+++ L R YLYG+ +V++DH+
Sbjct: 450 LSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQ 509
Query: 516 SLKYLFDQKELNMRQRRWLELLKDYD 541
L + + N + +RW +++Y+
Sbjct: 510 PLTFALGNRNFNAKLKRWKARIEEYN 535
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 254 bits (649), Expect = 4e-67
Identities = 146/418 (34%), Positives = 226/418 (53%), Gaps = 9/418 (2%)
Query: 134 PEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLV 193
P + +EF ++L + + Y + ++ + ++ L +R S + PV+ V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 194 KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDE 253
KK+G++R+ +DY+ LNK N YPLP I+ L+ ++ G+ +F+K+DL+S YH I+V+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515
Query: 254 DMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIE 313
D K AFR G +EY VMP+G++ AP F ++N I + VV ++DDILI+SK E
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSE 575
Query: 314 EEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWET 373
EH KH+K VLQ LK L +KCEF S+V F+G+ S G +D V QW+
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635
Query: 374 PKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTT 433
PK+ E+R FLG Y R+FI S+L PL L K + W + +KQ L +
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695
Query: 434 APILILPKPEEPFVVYCDASKFGLGGVLMQ---DGKV--VAYASRQLRVHEKNSPTHDLE 488
P+L + ++ DAS +G VL Q D K V Y S ++ + N D E
Sbjct: 696 PPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
Query: 489 LAAVVFVLKIWRHYLYGS--RFEVFSDHKSL--KYLFDQKELNMRQRRWLELLKDYDF 542
+ A++ LK WRHYL + F++ +DH++L + + + N R RW L+D++F
Sbjct: 756 MLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF 813
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 251 bits (642), Expect = 3e-66
Identities = 145/418 (34%), Positives = 226/418 (53%), Gaps = 9/418 (2%)
Query: 134 PEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLV 193
P + +EF ++L + + Y + ++ + ++ L +R S + PV+ V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 194 KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDE 253
KK+G++R+ +DY+ LNK N YPLP I+ L+ ++ G+ +F+K+DL+S YH I+V+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515
Query: 254 DMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIE 313
D K AFR G +EY VMP+G++ AP F ++N I + VV ++D+ILI+SK E
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSE 575
Query: 314 EEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWET 373
EH KH+K VLQ LK L +KCEF S+V F+G+ S G +D V QW+
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635
Query: 374 PKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTT 433
PK+ E+R FLG Y R+FI S+L PL L K + W + +KQ L +
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695
Query: 434 APILILPKPEEPFVVYCDASKFGLGGVLMQ---DGKV--VAYASRQLRVHEKNSPTHDLE 488
P+L + ++ DAS +G VL Q D K V Y S ++ + N D E
Sbjct: 696 PPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
Query: 489 LAAVVFVLKIWRHYLYGS--RFEVFSDHKSL--KYLFDQKELNMRQRRWLELLKDYDF 542
+ A++ LK WRHYL + F++ +DH++L + + + N R RW L+D++F
Sbjct: 756 MLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF 813
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 251 bits (642), Expect = 3e-66
Identities = 145/418 (34%), Positives = 226/418 (53%), Gaps = 9/418 (2%)
Query: 134 PEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLV 193
P + +EF ++L + + Y + ++ + ++ L +R S + PV+ V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 194 KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDE 253
KK+G++R+ +DY+ LNK N YPLP I+ L+ ++ G+ +F+K+DL+S YH I+V+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515
Query: 254 DMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIE 313
D K AFR G +EY VMP+G++ AP F ++N I + VV ++D+ILI+SK E
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSE 575
Query: 314 EEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWET 373
EH KH+K VLQ LK L +KCEF S+V F+G+ S G +D V QW+
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635
Query: 374 PKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTT 433
PK+ E+R FLG Y R+FI S+L PL L K + W + +KQ L +
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695
Query: 434 APILILPKPEEPFVVYCDASKFGLGGVLMQ---DGKV--VAYASRQLRVHEKNSPTHDLE 488
P+L + ++ DAS +G VL Q D K V Y S ++ + N D E
Sbjct: 696 PPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
Query: 489 LAAVVFVLKIWRHYLYGS--RFEVFSDHKSL--KYLFDQKELNMRQRRWLELLKDYDF 542
+ A++ LK WRHYL + F++ +DH++L + + + N R RW L+D++F
Sbjct: 756 MLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNF 813
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 250 bits (639), Expect = 6e-66
Identities = 142/397 (35%), Positives = 210/397 (52%), Gaps = 10/397 (2%)
Query: 156 YHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLVKKKDG------SMRLCIDYRQL 209
Y S++ E++ Q++ L+ K V PSVS + +P+LLV KK RL IDYRQ+
Sbjct: 320 YRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQI 379
Query: 210 NKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEY 269
NK + +++PLPRIDD++DQL AK FS +DL SG+HQI++ + T+F T G Y +
Sbjct: 380 NKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRF 439
Query: 270 KVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQILKE 329
+PFG+ AP F M F +++DD+++ E+ K+L V +E
Sbjct: 440 TRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCRE 499
Query: 330 RKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGY 389
L KC F++ EV+FLGH + GI D K D + + P R F+ Y
Sbjct: 500 YNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNY 559
Query: 390 YRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPFVVY 449
YRRFI+ F+ + +T+L K F W +C+ +F LK +L +L P + F +
Sbjct: 560 YRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCIT 619
Query: 450 CDASKFGLGGVLMQDGK----VVAYASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYG 505
DASK G VL Q+ VAYASR E N T + ELAA+ + + +R Y+YG
Sbjct: 620 TDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYG 679
Query: 506 SRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDF 542
F V +DH+ L YLF + + R L++Y+F
Sbjct: 680 KHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNF 716
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 246 bits (627), Expect = 1e-64
Identities = 141/431 (32%), Positives = 240/431 (54%), Gaps = 24/431 (5%)
Query: 132 VPPEREVEFSIDLVPGAKLVSMA-PYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPV 190
+P V +I V + S A P M S+ + +++ LL +RPS SP+ +P
Sbjct: 164 LPFNTAVTATIRTVDNEPVYSRAYPTLMGVSDF--VNNEVKQLLKDGIIRPSRSPYNSPT 221
Query: 191 LLVKKK------DGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSG 244
+V KK + + RL ID+R+LN+ TI +RYP+P I ++ L AK F+ +DL+SG
Sbjct: 222 WVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSG 281
Query: 245 YHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFID 304
YHQI + + D +KT+F G YE+ +PFG+ NA +F ++ + + K V++D
Sbjct: 282 YHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVD 341
Query: 305 DILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSK 364
D++I+S+ E +H +H+ VL+ L + + K F+ V +LG + S +G DP K
Sbjct: 342 DVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEK 401
Query: 365 VDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKS----------- 413
V A+ ++ P V ++RSFLGLA YYR FI+ F+ +A P+T + KG++
Sbjct: 402 VKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDI-LKGENGSVSKHMSKKI 460
Query: 414 -FVWDAQCESSFNELKQRLTTAPILI-LPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYA 471
++ ++F L+ L + +++ P ++PF + DAS G+G VL Q+G+ +
Sbjct: 461 PVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMI 520
Query: 472 SRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSR-FEVFSDHKSLKYLFDQKELNMRQ 530
SR L+ E+N T++ EL A+V+ L +++LYGSR +F+DH+ L + + N +
Sbjct: 521 SRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKI 580
Query: 531 RRWLELLKDYD 541
+RW + ++
Sbjct: 581 KRWKSYIDQHN 591
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 202 bits (514), Expect = 2e-51
Identities = 164/596 (27%), Positives = 271/596 (44%), Gaps = 57/596 (9%)
Query: 5 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNW-------LEYN 57
++V+ S+T S VC L + G F + V G+D I G N+ +++
Sbjct: 70 IMVKIADGSSITISKVCKDIDLIIAGEIFRIPTVYQQESGIDFIIGNNFCQLYEPFIQFT 129
Query: 58 RVCINCFNKT--VHF---------------------SSAEEESGAQFLTTKQLKQLERDG 94
I NK+ VH S ++ T K LE
Sbjct: 130 DRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLEEIA 189
Query: 95 ILMFSLMASLSLENQVVID-RLPVVNEFHEVFPDEIPDVPPERE--VEFSIDLVPGAKLV 151
IL S LS E + R+ + E E E P P + + ++ SI L +K +
Sbjct: 190 IL--SEGRRLSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAI 247
Query: 152 SMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYR 207
+ P S + E KQ+++LLD K ++PS SP AP LV +K+ G R+ ++Y+
Sbjct: 248 KVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYK 307
Query: 208 QLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHY 267
+NK T+ + Y LP D+L+ + G K+FS D +SG+ Q+ + E TAF GHY
Sbjct: 308 AMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHY 367
Query: 268 EYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQIL 327
E+ V+PFG+ AP +F +M+ F F KF V++DDIL++S EE+H H+ ++LQ
Sbjct: 368 EWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKC 426
Query: 328 KERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGL 386
+ + K + + +++FLG ++ ++++ +T + +++ FLG+
Sbjct: 427 NQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGI 486
Query: 387 AGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPF 446
Y +I +++ PL + + W + ++K+ L P L P PEE
Sbjct: 487 LTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL 546
Query: 447 VVYCDASKFGLGGVL----MQDGK----VVAYASRQLRVHEKNSPTHDLELAAVVFVLKI 498
++ DAS GG+L + +G + YAS + EKN ++D E AV+ +K
Sbjct: 547 IIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKK 606
Query: 499 WRHYLYGSRFEVFSDHK------SLKYLFDQKELNMRQRRWLELLKDYDFCNAHFR 548
+ YL F + +D+ +L Y D K R RW L Y F H +
Sbjct: 607 FSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIK 660
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 202 bits (514), Expect = 2e-51
Identities = 164/596 (27%), Positives = 272/596 (45%), Gaps = 57/596 (9%)
Query: 5 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNW-------LEYN 57
++V+ S+T S VC L + G F++ V G+D I G N+ +++
Sbjct: 70 IMVKIADGSSITISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFT 129
Query: 58 RVCINCFNKT--VHF---------------------SSAEEESGAQFLTTKQLKQLERDG 94
I NK+ VH S ++ T K LE
Sbjct: 130 DRVIFTKNKSYPVHITKLTRAVRVGIEGFLESMKKRSKTQQPEPVNISTNKIENPLEEIA 189
Query: 95 ILMFSLMASLSLENQVVID-RLPVVNEFHEVFPDEIPDVPPERE--VEFSIDLVPGAKLV 151
IL S LS E + R+ + E E E P P + + ++ SI L +K +
Sbjct: 190 IL--SEGRRLSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAI 247
Query: 152 SMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYR 207
+ P S + E KQ+++LLD K ++PS SP AP LV +K+ G R+ ++Y+
Sbjct: 248 KVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYK 307
Query: 208 QLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHY 267
+NK TI + Y LP D+L+ + G K+FS D +SG+ Q+ + E TAF GHY
Sbjct: 308 AMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHY 367
Query: 268 EYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQIL 327
E+ V+PFG+ AP +F +M+ F F KF V++DDIL++S EE+H H+ ++LQ
Sbjct: 368 EWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKC 426
Query: 328 KERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGL 386
+ + K + + +++FLG ++ ++++ +T + +++ FLG+
Sbjct: 427 NQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGI 486
Query: 387 AGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPF 446
Y +I +++ PL + + W + ++K+ L P L P PEE
Sbjct: 487 LTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL 546
Query: 447 VVYCDASKFGLGGVL----MQDGK----VVAYASRQLRVHEKNSPTHDLELAAVVFVLKI 498
++ DAS GG+L + +G + YAS + E+N ++D E AV+ +K
Sbjct: 547 IIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKK 606
Query: 499 WRHYLYGSRFEVFSDHK------SLKYLFDQKELNMRQRRWLELLKDYDFCNAHFR 548
+ YL F + +D+ +L Y D K R RW L Y F H +
Sbjct: 607 FSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIK 660
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 199 bits (506), Expect = 2e-50
Identities = 158/587 (26%), Positives = 270/587 (45%), Gaps = 46/587 (7%)
Query: 5 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVCINCF 64
++V+ S+T + VC L + G F + V G+D I G N+ + I
Sbjct: 72 IMVKIADGSSITINKVCRDIDLIIAGEIFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFT 131
Query: 65 NKT---------VHFSSAEE----------ESGAQFLTTKQLK--QLERDGILMFSLMAS 103
++ VH + ES + T+Q + + + I + S
Sbjct: 132 DRVIFTKDRTYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRR 191
Query: 104 LSLENQVVID-RLPVVNEFHEVFPDEIPDVPPERE--VEFSIDLVPGAKLVSMAPYHMSA 160
LS E + R+ + E E E P P + + ++ SI L +K + + P S
Sbjct: 192 LSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSP 251
Query: 161 SELAELKKQLEDLLDKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYRQLNKVTIKN 216
+ E KQ+++LLD K ++PS SP AP LV +K+ G R+ ++Y+ +NK T+ +
Sbjct: 252 MDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGD 311
Query: 217 RYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGV 276
Y P D+L+ + G K+FS D +SG+ Q+ + E TAF GHYE+ V+PFG+
Sbjct: 312 AYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGL 371
Query: 277 TNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKL 336
AP +F +M+ F F KF V++DDIL++S EE+H H+ ++LQ + +
Sbjct: 372 KQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSK 430
Query: 337 SKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIE 395
K + + +++FLG ++ ++++ +T + +++ FLG+ Y +I
Sbjct: 431 KKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIP 490
Query: 396 GFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKF 455
+++ PL + + W + ++K+ L P L P PEE ++ DAS
Sbjct: 491 KLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDD 550
Query: 456 GLGGVL----MQDGK----VVAYASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSR 507
GG+L + +G + YAS + EKN ++D E AV+ +K + YL
Sbjct: 551 YWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVH 610
Query: 508 FEVFSDHK------SLKYLFDQKELNMRQRRWLELLKDYDFCNAHFR 548
F + +D+ +L Y D K R RW L Y F H +
Sbjct: 611 FLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIK 655
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 197 bits (502), Expect = 5e-50
Identities = 162/596 (27%), Positives = 271/596 (45%), Gaps = 57/596 (9%)
Query: 5 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNW-------LEYN 57
++V+ S+T S VC L + F++ V G+D I G N+ +++
Sbjct: 70 IMVKIADGSSITISKVCKDIDLIIAREIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFT 129
Query: 58 RVCINCFNKT--VHF---------------------SSAEEESGAQFLTTKQLKQLERDG 94
I NK+ VH S ++ T K L+
Sbjct: 130 DRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLKEIA 189
Query: 95 ILMFSLMASLSLENQVVID-RLPVVNEFHEVFPDEIPDVPPERE--VEFSIDLVPGAKLV 151
IL S LS E + R+ + E E E P P + + ++ SI L +K +
Sbjct: 190 IL--SEGRRLSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAI 247
Query: 152 SMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYR 207
+ P S + E KQ+++LLD K ++PS SP AP LV +K+ G R+ ++Y+
Sbjct: 248 KVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYK 307
Query: 208 QLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHY 267
+NK TI + Y LP D+L+ + G K+FS D +SG+ Q+ + E TAF GHY
Sbjct: 308 AMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHY 367
Query: 268 EYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQIL 327
E+ V+PFG+ AP +F +M+ F F KF V++DDIL++S EE+H H+ ++LQ
Sbjct: 368 EWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKC 426
Query: 328 KERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGL 386
+ + K + + +++FLG ++ ++++ +T + +++ FLG+
Sbjct: 427 NQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGI 486
Query: 387 AGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPF 446
Y +I +++ PL + + W + ++K+ L P L P PEE
Sbjct: 487 LTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL 546
Query: 447 VVYCDASKFGLGGVL----MQDGK----VVAYASRQLRVHEKNSPTHDLELAAVVFVLKI 498
++ DAS GG+L + +G + YAS + E+N ++D E AV+ +K
Sbjct: 547 IIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKK 606
Query: 499 WRHYLYGSRFEVFSDHK------SLKYLFDQKELNMRQRRWLELLKDYDFCNAHFR 548
+ YL F + +D+ +L Y D K R RW L Y F H +
Sbjct: 607 FSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIK 660
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 195 bits (496), Expect = 2e-49
Identities = 160/596 (26%), Positives = 269/596 (44%), Gaps = 57/596 (9%)
Query: 5 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNW-------LEYN 57
++V+ S+T S VC L + G F++ V G+D I G N+ +++
Sbjct: 71 IMVKIADGSSITISKVCKDIDLIIVGVIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFT 130
Query: 58 RVCINCFNKT--VHF---------------------SSAEEESGAQFLTTKQLKQLERDG 94
I NK+ VH S ++ T K LE
Sbjct: 131 DRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLEEIA 190
Query: 95 ILMFSLMASLSLENQVVID-RLPVVNEFHEVFPDEIPDVPPERE--VEFSIDLVPGAKLV 151
IL S LS E + R+ E E E P P + + ++ SI L +K +
Sbjct: 191 IL--SEGRRLSEEKLFITQQRMQKTEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAI 248
Query: 152 SMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLVKKKD----GSMRLCIDYR 207
+ P S + E KQ+++LLD K ++PS SP AP LV + G+ R+ ++Y+
Sbjct: 249 KVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYK 308
Query: 208 QLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHY 267
+NK T+ + Y LP D+L+ + G K+FS D +SG+ Q+ + E TAF GHY
Sbjct: 309 AMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHY 368
Query: 268 EYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQIL 327
E+ V+PFG+ AP +F +M+ F F KF V++DDI+++S EE+H H+ ++LQ
Sbjct: 369 EWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDIVVFSNNEEDHLLHVAMILQKC 427
Query: 328 KERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGL 386
+ + K + + +++FLG ++ ++++ +T + +++ FLG+
Sbjct: 428 NQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGI 487
Query: 387 AGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPF 446
Y +I +++ PL + + W + ++K+ L P L P PEE
Sbjct: 488 LTYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKL 547
Query: 447 VVYCDASKFGLGGVL----MQDGK----VVAYASRQLRVHEKNSPTHDLELAAVVFVLKI 498
++ DAS GG+L + +G + Y S + E+N ++D E AV+ +K
Sbjct: 548 IIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKK 607
Query: 499 WRHYLYGSRFEVFSDHK------SLKYLFDQKELNMRQRRWLELLKDYDFCNAHFR 548
+ YL F + +D+ +L Y D K R RW L Y F H +
Sbjct: 608 FSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK--LGRNIRWQAWLSHYSFDVEHIK 661
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 192 bits (488), Expect = 2e-48
Identities = 147/558 (26%), Positives = 260/558 (46%), Gaps = 34/558 (6%)
Query: 20 VCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLE-YN-------RVCINCFNKTV--- 68
VC + G+ FE+ V G+D + G N+ YN R+ + N+ V
Sbjct: 94 VCKNLKVKFAGKSFEIPTVYQQETGIDFLIGNNFCRLYNPFIQWEDRIAFHLKNEMVLIK 153
Query: 69 HFSSAEEESGAQFLTT--KQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNEFHEVFP 126
+ A S FL K K + G + + + ++ ++ + + +
Sbjct: 154 KVTKAFSVSNPSFLENMKKDSKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVC 213
Query: 127 DEIPDVPPERE--VEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVRPSVS 184
E P P + + ++ SI L+ K++ + P S + KQ+++LLD + PS S
Sbjct: 214 SENPIDPIKSKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKS 273
Query: 185 PWGAPVLLVK----KKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKID 240
+P LV+ ++ G R+ ++Y+ +N+ TI + + LP + +L+ L G +FS D
Sbjct: 274 QHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFD 333
Query: 241 LRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVV 300
+SG+ Q+ + +E + TAF GH+++KV+PFG+ AP +F +M + DKF +
Sbjct: 334 CKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCM 392
Query: 301 VFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLG-HVTSGNGIA 359
V++DDI+++S E +H H+ VL+I+++ + K + +++FLG + G
Sbjct: 393 VYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCP 452
Query: 360 VDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQ 419
+ + + + ++ FLG+ Y +I +++ PL K ++ W
Sbjct: 453 QNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQS 512
Query: 420 CESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQ---DG--KVVAYASRQ 474
++K+ L + P L LPKPE+ ++ DAS GGVL DG + Y+S
Sbjct: 513 DSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGS 572
Query: 475 LRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLF------DQKELNM 528
+ EKN ++D EL AV V+ + YL RF V +D+K+ Y D K+
Sbjct: 573 FKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQ--G 630
Query: 529 RQRRWLELLKDYDFCNAH 546
R RW Y F H
Sbjct: 631 RLVRWQNWFSKYQFDVEH 648
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 179 bits (453), Expect = 2e-44
Identities = 136/566 (24%), Positives = 266/566 (46%), Gaps = 40/566 (7%)
Query: 20 VCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEY--------NRVCINCFNKTV--- 68
VC + P+ + G F + + G+D++ G N+ + +R+ + ++V
Sbjct: 74 VCSKLPIRLGGERFLIPTLFQQESGIDLLLGNNFCQLYSPFIQYTDRIYFHLNKQSVIIG 133
Query: 69 HFSSAEEESGAQFLTT-KQLKQLERDGILMFSLMASLSLEN----------QVVIDRLPV 117
+ A + FL + K+ ++ R + + L LE ++ I +
Sbjct: 134 KITKAYQYGVKGFLESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDEMLYEIQISKFSA 193
Query: 118 VNEFHEVFPDEIPDVPPEREVEF---SIDLVPGAKLVSMAPYHMSASELAELKKQLEDLL 174
+ E E E P + PE+ ++ +I+L+ +V + P S S+ E +Q+++LL
Sbjct: 194 IEEMLERVSSENP-IDPEKSKQWMTATIELIDPKTVVKVKPMSYSPSDREEFDRQIKELL 252
Query: 175 DKKFVRPSVSPWGAPVLLVK----KKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 230
+ K ++PS S +P LV+ ++ G R+ ++Y+ +NK T + + LP D+L+ +
Sbjct: 253 ELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLV 312
Query: 231 VGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRI 290
G K++S D +SG Q+ + E TAF GHY++ V+PFG+ AP +F +
Sbjct: 313 RGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANS 372
Query: 291 FHAFLDKFVVVFIDDILIYSKI-EEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFL 349
K+ V++DDIL++S +EH H+ +L+ ++ + K + + +++FL
Sbjct: 373 HSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFL 432
Query: 350 GHVTSGNGIAVDPSKVDAVSQW-ETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLT 408
G ++ + ++ + + +++ FLG+ Y +I + + PL
Sbjct: 433 GLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTYASDYIPKLASIRKPLQSKL 492
Query: 409 YKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLM----QD 464
+ ++ W+ ++K+ L + P L P+P + V+ DAS+ GG+L
Sbjct: 493 KEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSH 552
Query: 465 GKVVAYASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQK 524
+ YAS + E+N +++ EL AV+ V+K + YL SRF + +D+K+ + +
Sbjct: 553 EYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNIN 612
Query: 525 ELNMRQR----RWLELLKDYDFCNAH 546
R++ RW L YDF H
Sbjct: 613 LKGDRKQGRLVRWQMWLSQYDFDVEH 638
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 170 bits (431), Expect = 8e-42
Identities = 116/413 (28%), Positives = 200/413 (48%), Gaps = 28/413 (6%)
Query: 146 PGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLV-----------K 194
P K++ H++ + + +Q+ LL K +RPS S + +V K
Sbjct: 1398 PDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGK 1457
Query: 195 KKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDED 254
+K G R+ +Y+ LN+ T ++Y LP I+ ++ ++ +K++SK DL+SG+ Q+ +++E
Sbjct: 1458 EKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEES 1517
Query: 255 MQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEE 314
+ TAF YE+ VMPFG+ NAP +F M+ +F +KF+ V+IDDIL++S+ E
Sbjct: 1518 VPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAE 1576
Query: 315 EHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWETP 374
+H++HL +LQ+ KE L +K + E+ FLG I + P + + +
Sbjct: 1577 QHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDE 1636
Query: 375 KSVTE--IRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLT 432
K T +RS+LG+ Y R +I+ KL PL Q + + ++K+++
Sbjct: 1637 KLATPEGMRSWLGILSYARNYIQDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVK 1696
Query: 433 TAPILILPKPEEPFVVYCDASKFGLGGVL---------MQDGKVVAYASRQLRVHEKNSP 483
P L LP + ++ D G G V ++ AYAS +
Sbjct: 1697 NLPDLQLPPKDSFIIIETDGCMTGWGAVCKWKMSKHDPRSTERICAYASGSFNPIKS--- 1753
Query: 484 THDLELAAVVFVL-KIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQR-RWL 534
T D E+ A + L K +YL + SD +++ +++ N R RWL
Sbjct: 1754 TIDAEIQAAIHGLDKFKIYYLDKKELIIRSDCEAIIKFYNKTNENKPSRVRWL 1806
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 154 bits (389), Expect = 6e-37
Identities = 129/480 (26%), Positives = 232/480 (47%), Gaps = 32/480 (6%)
Query: 26 LSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVCINCFNKT-VHFSSAEEESGAQFLTT 84
L + ++F + ++ L G+D+I G N+L+ + I + + + +Q ++T
Sbjct: 80 LKIENKEFLIPIIYLHDSGLDLIIGNNFLKLYQPFIQRLETIELRWKNLNNPKESQMIST 139
Query: 85 KQLKQLERDGILMFSL-MASLSLENQVVIDRLPVVNEFHEVFPDEIPDVPPERE---VEF 140
K L + E +L S + LE + + + EV + D + +E
Sbjct: 140 KILTKNE---VLKLSFEKIHICLEKYLFFKTIE--EQLEEVCSEHPLDETKNKNGLLIEI 194
Query: 141 SI-DLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVLLVKK---- 195
+ D + + + PY + ++ E K++ EDLL K +R S SP AP V+
Sbjct: 195 RLKDPLQEINVTNRIPY--TIRDVQEFKEECEDLLKKGLIRESQSPHSAPAFYVENHNEI 252
Query: 196 KDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDM 255
K G R+ I+Y+++N+ TI + Y LPR D +++++ G+ FS +D +SGY+Q+++ +
Sbjct: 253 KRGKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTK 312
Query: 256 QKTAFR-TRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSK-IE 313
TAF HYE+ V+ FG+ AP ++ +M++ L+ + +IDDILI++K +
Sbjct: 313 PLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKG-LEHICLAYIDDILIFTKGSK 371
Query: 314 EEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNG-IAVDPSKVDAVSQW- 371
E+H ++IVLQ +KE+ + K + E+ +LG GNG I + P + + Q+
Sbjct: 372 EQHVNDVRIVLQRIKEKGIIISKKKSKLIQQEIEYLGLKIQGNGEIDLSPHTQEKILQFP 431
Query: 372 ETPKSVTEIRSFLGLAGYYRRFIEGFSK-LALPLTQLTYK---GKSFVWDAQCESSFNEL 427
+ + +I+ FLG Y EGF K LAL L K + WD +
Sbjct: 432 DELEDRKQIQRFLGCINYIAN--EGFFKNLALERKHLQKKISVKNPWKWDTIDTKMVQSI 489
Query: 428 KQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEKNSPTHDL 487
K ++ + P L ++ +V DAS+ G L + + +++ + E PT DL
Sbjct: 490 KGKIQSLPKLYNASIQDFLIVETDASQHSWSGCL----RALPKGKQKIGLDEFGIPTADL 545
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 152 bits (383), Expect = 3e-36
Identities = 141/528 (26%), Positives = 234/528 (43%), Gaps = 66/528 (12%)
Query: 12 KGSVTTS-LVCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWLEYNRVCINCFNKTVHF 70
+G VT S LV CP + GRD L LG + HF
Sbjct: 70 QGMVTHSFLVVPECPYPLLGRDL------LTKLGAQI---------------------HF 102
Query: 71 SSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLPVVNEFHEVFPDEIP 130
S E+GAQ L +RDG + L SL E+++ +PV +V+ + P
Sbjct: 103 S----EAGAQVL--------DRDGQPIQILTVSLQDEHRLF--DIPVTTSLPDVWLQDFP 148
Query: 131 DVPPER--------EVEFSIDLVPGAKLVSMAPYHMSASELAELKKQLEDLLDKKFVRPS 182
E + IDL P A VS+ Y MS +++ + L+ +RP
Sbjct: 149 QAWAETGGLGRAKCQAPIIIDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRPC 208
Query: 183 VSPWGAPVLLVKKKDGS-MRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLV-GAKVFSKID 240
SPW P+L VKK R D R++NK T+ +P +L+ L ++ +D
Sbjct: 209 RSPWNTPLLPVKKPGTQDYRPVQDLREINKRTVDIHPTVPNPYNLLSTLKPDYSWYTVLD 268
Query: 241 LRSGYHQIKVKDEDMQKTAFRTR------YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAF 294
L+ + + + + + AF + G + +P G N+P +F E ++R F
Sbjct: 269 LKDAFFCLPLAPQSQELFAFEWKDPERGISGQLTWTRLPQGFKNSPTLFDEALHRDLTDF 328
Query: 295 LDKFVVV----FIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLG 350
+ V ++DD+L+ + ++ + + +LQ L E+ A K + ++V++LG
Sbjct: 329 RTQHPEVTLLQYVDDLLLAAPTKKACTQGTRHLLQELGEKGYRASAKKAQICQTKVTYLG 388
Query: 351 HVTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYK 410
++ S + P +++ V++ P++ E+R FLG AG+ R +I GF++LA PL LT +
Sbjct: 389 YILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKE 448
Query: 411 GKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQD----GK 466
F W + + +F LK+ L +AP L LP +PF ++ D + GVL Q +
Sbjct: 449 STPFTWQTEHQLAFEALKKALLSAPALGLPDTSKPFTLFLDERQGIAKGVLTQKLGPWKR 508
Query: 467 VVAYASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDH 514
VAY S++L P +AA ++K G V + H
Sbjct: 509 PVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPH 556
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 150 bits (378), Expect = 1e-35
Identities = 110/400 (27%), Positives = 199/400 (49%), Gaps = 24/400 (6%)
Query: 155 PYHMSASELAELKKQLEDLLDKKFVRPS--VSPWGAPVLLVKKKDGSM----RLCIDYRQ 208
PY + E+ E KQ+++LLD K ++ + +V+ + R+ +Y++
Sbjct: 1190 PYTPADKEVFE--KQIKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKR 1247
Query: 209 LNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYE 268
LN + + +P +++ + A +FSK DL++G+H +K+KD+ T F G Y
Sbjct: 1248 LNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYT 1307
Query: 269 YKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQILK 328
+ V PFG+ NAP F +M F KF +++IDDILI S E+EH +HLKI +K
Sbjct: 1308 WNVCPFGIANAPCAFQRFMQESFGDL--KFALLYIDDILIASNNEKEHIEHLKIFFNRVK 1365
Query: 329 ERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWETPK--SVTEIRSFLGL 386
E K + +L EV +LG I++ P VD + +++ K ++ ++++LGL
Sbjct: 1366 EVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGL 1425
Query: 387 AGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPF 446
Y R +I+ SKL PL + T K +++ + + ++++ ++ L PK +
Sbjct: 1426 LNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYI 1485
Query: 447 VVYCDASKFGLGGVLM---------QDGKVVAYASRQLRVHEKNSPTHDLELAAVVFVLK 497
++ DAS+ G G VL+ K+ YAS +K + D E+ A+ L
Sbjct: 1486 IIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFG-EKKTWTSLDYEIEAINEALN 1544
Query: 498 IWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQR-RWLEL 536
++ YL F + +D +++ ++ R + RW++L
Sbjct: 1545 KFQIYL-DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKL 1583
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,068,550
Number of Sequences: 164201
Number of extensions: 2746629
Number of successful extensions: 6836
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 6550
Number of HSP's gapped (non-prelim): 158
length of query: 552
length of database: 59,974,054
effective HSP length: 115
effective length of query: 437
effective length of database: 41,090,939
effective search space: 17956740343
effective search space used: 17956740343
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144765.10