BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144728.5 - phase: 0 
         (497 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PRIM_MYCSM (O52200) DNA primase (EC 2.7.7.-)                           32  4.9
PRIM_MYCTU (P63962) DNA primase (EC 2.7.7.-)                           31  6.5
PRIM_MYCBO (P63963) DNA primase (EC 2.7.7.-)                           31  6.5

>PRIM_MYCSM (O52200) DNA primase (EC 2.7.7.-)
          Length = 636

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 137 IMLKNGNYDSRSGLCPQDGKRVPPF----KPGRFPCFGTG 172
           + L+    DS  GLCP   ++ P F      G F CFG G
Sbjct: 30  VQLRRAGADSLKGLCPFHDEKTPSFHVRPNHGHFHCFGCG 69


>PRIM_MYCTU (P63962) DNA primase (EC 2.7.7.-)
          Length = 639

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 137 IMLKNGNYDSRSGLCPQDGKRVPPF----KPGRFPCFGTG 172
           + L+    DS  GLCP   ++ P F      G F CFG G
Sbjct: 27  VQLRRAGADSLKGLCPFHNEKSPSFHVRPNHGHFHCFGCG 66


>PRIM_MYCBO (P63963) DNA primase (EC 2.7.7.-)
          Length = 639

 Score = 31.2 bits (69), Expect = 6.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 137 IMLKNGNYDSRSGLCPQDGKRVPPF----KPGRFPCFGTG 172
           + L+    DS  GLCP   ++ P F      G F CFG G
Sbjct: 27  VQLRRAGADSLKGLCPFHNEKSPSFHVRPNHGHFHCFGCG 66


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,535,523
Number of Sequences: 164201
Number of extensions: 3338287
Number of successful extensions: 6109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6109
Number of HSP's gapped (non-prelim): 3
length of query: 497
length of database: 59,974,054
effective HSP length: 114
effective length of query: 383
effective length of database: 41,255,140
effective search space: 15800718620
effective search space used: 15800718620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)