BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144727.8 + phase: 0 /pseudo
(770 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 444 e-124
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 284 5e-76
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 196 3e-49
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 147 1e-34
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 93 2e-18
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 86 5e-16
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 84 2e-15
YME4_YEAST (Q04711) Transposon Ty1 protein B 83 2e-15
YMU0_YEAST (Q04670) Transposon Ty1 protein B 82 5e-15
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 82 7e-15
YMT5_YEAST (Q04214) Transposon Ty1 protein B 80 2e-14
YMD9_YEAST (Q03434) Transposon Ty1 protein B 80 2e-14
YJZ9_YEAST (P47100) Transposon Ty1 protein B 80 2e-14
YJZ7_YEAST (P47098) Transposon Ty1 protein B 78 8e-14
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 49 5e-05
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 40 0.030
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 39 0.040
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 39 0.052
GUN2_BACS4 (P06565) Endoglucanase B (EC 3.2.1.4) (Endo-1,4-beta-... 36 0.44
EXPA_DROME (Q07436) Expanded protein 35 0.98
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 444 bits (1143), Expect = e-124
Identities = 293/798 (36%), Positives = 426/798 (52%), Gaps = 50/798 (6%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+F+KF VE + +K RSD+ GEY S EF+EY GI +++ P TPQ NG+AER
Sbjct: 528 VFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAER 587
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
NR +++ RS+L A +P FW EA+ T +LINR PS+ + F+ P ++ YS
Sbjct: 588 MNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSH 647
Query: 122 LHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNVTFFYN 181
L FGC F H+P ++ KL +S+ C F+GY + G+ +D SR+V F +
Sbjct: 648 LKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRES 707
Query: 182 QFMLHSISPDINDITILPNF------SIMPQSIERYKPEFT-------YVRKCIKQIPTA 228
+ + + I+PNF S P S E E + V + +Q+
Sbjct: 708 EVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEG 767
Query: 229 PPDTE-PPPDPEPVEPRRSSRTSRAPDRFSPDRYGSKHTSLTASLSSISIPTCYSQVVKD 287
+ E P E +P R S R R P +++ ++ S+ S K+
Sbjct: 768 VEEVEHPTQGEEQHQPLRRSERPRVESRRYP---STEYVLISDDREPESLKEVLSHPEKN 824
Query: 288 VRWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRN 347
+ +KAM EE+++LQ+N T+ +V P +P+ CKWV+ +K + D L RY ARLV
Sbjct: 825 -QLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 883
Query: 348 KQEYGIDYDETFAPVAKMTT--------------VHQMDVKNIFLHGDLAEDIYMTPPQG 393
+Q+ GID+DE F+PV KMT+ V Q+DVK FLHGDL E+IYM P+G
Sbjct: 884 EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943
Query: 394 LFSSSKG--VCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTS-TGIV 450
+ K VCKL +SLYGLKQAPR WY KF S + + + + ++ R S +
Sbjct: 944 FEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFI 1003
Query: 451 LLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEV--HSTSKGIFLHQH 508
+LLLYVDDM+I G D I +LK L SF MKDLG LG+++ TS+ ++L Q
Sbjct: 1004 ILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQE 1063
Query: 509 KYATYLISMAGLQSTNPVDTPLEVNVKYHR--------DDGDILPDPLLYRQLVGSL-N* 559
KY ++ +++ PV TPL ++K + + G++ P Y VGSL
Sbjct: 1064 KYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVP--YSSAVGSLMYA 1121
Query: 560 LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSD 619
+ TRPDI+ V VS+F+ +P H AV+ I+RYL+G++ L F G+ P L Y+D
Sbjct: 1122 MVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG-GSDPILKGYTD 1180
Query: 620 ANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGF 679
A+ AG D R S T + ISW+SK Q V+ S+TE+EY A E+IWL+ F
Sbjct: 1181 ADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRF 1240
Query: 680 LAELGFP*TEPTSLYADNTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVST 739
L ELG E +Y D+ SAI N ++H RTK I+V H IR+ D+ + + +ST
Sbjct: 1241 LQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKIST 1299
Query: 740 QLQIADILTKAVPRPRHQ 757
AD+LTK VPR + +
Sbjct: 1300 NENPADMLTKVVPRNKFE 1317
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 284 bits (727), Expect = 5e-76
Identities = 186/556 (33%), Positives = 283/556 (50%), Gaps = 33/556 (5%)
Query: 244 RRSSRTSRAPD-RFSPDRYGSKHTSLTASLSSISIPTCYSQV-VKDVR--WIKAMNEEIQ 299
RRS R P ++ + L A +P + ++ +D + W +A+N E+
Sbjct: 856 RRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELN 915
Query: 300 ALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYNARLVTLRNKQEYGIDYDETF 359
A + N TW I P + + +WV+SVK N G+ RY ARLV Q+Y IDY+ETF
Sbjct: 916 AHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETF 975
Query: 360 APVAKMTT--------------VHQMDVKNIFLHGDLAEDIYMTPPQGLFSSSKGVCKLK 405
APVA++++ VHQMDVK FL+G L E+IYM PQG+ +S VCKL
Sbjct: 976 APVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLN 1035
Query: 406 RSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFI--HRTSTGIVLLLLYVDDMVITG 463
+++YGLKQA R W+E F +L F +S + ++I + +LLYVDD+VI
Sbjct: 1036 KAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIAT 1095
Query: 464 SDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYATYLISMAGLQST 523
D + K L F M DL + +F+G+ + I+L Q Y ++S +++
Sbjct: 1096 GDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENC 1155
Query: 524 NPVDTPLEVNVKY---HRDDGDILPDPLLYRQLVGSLN*LTI-TRPDISFVVQQVSQFMH 579
N V TPL + Y + D+ P R L+G L + + TRPD++ V +S++
Sbjct: 1156 NAVSTPLPSKINYELLNSDEDCNTP----CRSLIGCLMYIMLCTRPDLTTAVNILSRYSS 1211
Query: 580 SPRHLHLAAVRRIIRYLKGSSHCGLFF--SIGNYPKLSAYSDANWAGCPDTRHSVTSWCM 637
++R++RYLKG+ L F ++ K+ Y D++WAG R S T +
Sbjct: 1212 KNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLF 1271
Query: 638 FLRS-SLISWKSKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYAD 696
+ +LI W +K+Q V+ SSTE+EY A++ A E +WL+ L + P +Y D
Sbjct: 1272 KMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYED 1331
Query: 697 NTSAI*FVANPVFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRH 756
N I NP H+R K I++ H R+ +I L ++ T+ Q+ADI TK +P R
Sbjct: 1332 NQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391
Query: 757 QFLVGKLMIF--DQLN 770
L KL + DQ N
Sbjct: 1392 VELRDKLGLLQDDQSN 1407
Score = 90.5 bits (223), Expect = 2e-17
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%)
Query: 1 SMFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAE 60
SMF+ F+ E F V D+ EY+S+E +++ KGI + P+TPQ NG++E
Sbjct: 527 SMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSE 586
Query: 61 RKNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPS--IVIEFDSPFFHLFKFQLD 118
R R + + R+++ A + FW EA+ T +LINR+PS +V +P+ +
Sbjct: 587 RMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPY 646
Query: 119 YSDLHTFGCVCFVHLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCYDVSNHSFRVSRNV 176
L FG +VH+ ++ K +S + F+GY + GF +D N F V+R+V
Sbjct: 647 LKHLRVFGATVYVHIKN-KQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDV 701
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 196 bits (497), Expect = 3e-49
Identities = 96/224 (42%), Positives = 142/224 (62%), Gaps = 1/224 (0%)
Query: 452 LLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNLHYFLGLEVHSTSKGIFLHQHKYA 511
LLLYVDD+++TGS N + L QL ++F MKDLG +HYFLG+++ + G+FL Q KYA
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 512 TYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILPDPLLYRQLVGSLN*LTITRPDISFVV 571
+++ AG+ P+ TPL + + PDP +R +VG+L LT+TRPDIS+ V
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKY-PDPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 572 QQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSDANWAGCPDTRHS 631
V Q MH P ++R++RY+KG+ GL+ + + A+ D++WAGC TR S
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 632 VTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAACSEIIW 675
T +C FL ++ISW +K+Q VS+SSTE+EYRA+ +E+ W
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 147 bits (370), Expect = 1e-34
Identities = 97/300 (32%), Positives = 149/300 (49%), Gaps = 9/300 (3%)
Query: 371 MDVKNIFLHGDLAEDIYMTPPQGLFSSSKG--VCKLKRSLYGLKQAPRAWYEKFCSSL-- 426
MDV FL+ + E IY+ P G + V +L +YGLKQAP W E ++L
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 427 LGFCFSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLG 486
+GFC ++ L+ TS G + + +YVDD+++ R+K++L + MKDLG
Sbjct: 61 IGFCRHEGEH--GLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLG 118
Query: 487 NLHYFLGLEVHSTSKG-IFLHQHKYATYLISMAGLQSTNPVDTPLEVNVKYHRDDGDILP 545
+ FLGL +H ++ G I L Y S + + + TPL + L
Sbjct: 119 KVDKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLK 178
Query: 546 DPLLYRQLVGSLN*LTIT-RPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGL 604
D Y+ +VG L T RPDIS+ V +S+F+ PR +HL + RR++RYL + L
Sbjct: 179 DITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCL 238
Query: 605 FFSIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKK-QARVSKSSTESEY 663
+ G+ L+ Y DA+ D HS + L + ++W SKK + + STE+EY
Sbjct: 239 KYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEY 298
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 93.2 bits (230), Expect = 2e-18
Identities = 102/404 (25%), Positives = 176/404 (43%), Gaps = 33/404 (8%)
Query: 371 MDVKNIFLHGDLAEDIYMTPPQGLFSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFC 430
+D+ + FL+ L E+IY+ P + V KL ++LYGLKQ+P+ W + L G
Sbjct: 1383 LDINHAFLYAKLEEEIYIPHPH----DRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIG 1438
Query: 431 FSHSQYNSSLFIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMKDLGNL-- 488
+ Y L+ +T +++ +YVDD VI S+ + +L ++F +K G L
Sbjct: 1439 LKDNSYTPGLY--QTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLID 1496
Query: 489 ----HYFLGLE-VHSTSKGI-------FLHQ--HKYATYL----ISMAGLQSTNPVDTPL 530
LG++ V++ G F+++ KY L S ST +D
Sbjct: 1497 DVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKK 1556
Query: 531 EVNVKYHRDDGDILPDPLLYRQLVGSLN*LT-ITRPDISFVVQQVSQFMHSPRHLHLAAV 589
+V + + L +QL+G LN + R DI F V++V++ ++ P +
Sbjct: 1557 DV---LQMSEEEFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMI 1613
Query: 590 RRIIRYLKGSSHCGLFF--SIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWK 647
+II+YL G+ + K+ A +DA+ G S ++ ++ +
Sbjct: 1614 YKIIQYLVRYKDIGIHYDRDCNKDKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVY 1672
Query: 648 SKKQARVSKSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPTSLYADNTSAI*FVANP 707
S K SSTE+E A+Y ++ L+ L ELG + D+ AI +
Sbjct: 1673 SNKSTNRCVSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRS 1732
Query: 708 VFHERTKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAV 751
+ K + I++ E I L ++ + IAD+LTK V
Sbjct: 1733 YQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPV 1776
Score = 46.6 bits (109), Expect = 2e-04
Identities = 29/95 (30%), Positives = 46/95 (47%)
Query: 4 KKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKN 63
+K + YVETQF V+ SD E+ + + +EY KGI + NG AER
Sbjct: 676 RKNIQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYI 735
Query: 64 RHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRL 98
R ++ +LL + + +FW A+ + + N L
Sbjct: 736 RTIITDATTLLRQSNLRVKFWEYAVTSATNIRNYL 770
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 85.5 bits (210), Expect = 5e-16
Identities = 123/516 (23%), Positives = 218/516 (41%), Gaps = 54/516 (10%)
Query: 289 RWIKAMNEEIQALQENLTWDIVSCPP--DIKPMGCKWVYSVKLNSDGSLNRYNARLVT-- 344
R+++A ++EI L + TWD DI P K + S+ + + + AR V
Sbjct: 1264 RYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPK--KVINSMFIFNKKRDGTHKARFVARG 1321
Query: 345 -LRNKQEYGIDYDE-TFAPVAKMTT----------VHQMDVKNIFLHGDLAEDIYMTPPQ 392
+++ Y D T A MT+ + Q+D+ + +L+ D+ E++Y+ PP
Sbjct: 1322 DIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPP 1381
Query: 393 GLFSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSLFIHRTSTGIVLL 452
L + K + +L++SLYGLKQ+ WYE S L+ C S + V +
Sbjct: 1382 HLGLNDK-LLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFKNSQ---VTI 1437
Query: 453 LLYVDDMVITGSDNAFIQRLKEQLHASFHMK--DLG----NLHY-FLGLEV-HSTSKGIF 504
L+VDDM++ D +++ L + K +LG + Y LGLE+ + SK +
Sbjct: 1438 CLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMK 1497
Query: 505 LHQHKYATYLISMAGLQSTNPVDTPLEV--NVKYHRDDGDILPDPLLYRQLVGSLN*LT- 561
L K T + + NP L ++ D ++ D Y++ V + L
Sbjct: 1498 LGMEKSLTEKLPKLNV-PLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIG 1556
Query: 562 -------ITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYP-- 612
R D+ + + ++Q + P L +I+++ + L + N P
Sbjct: 1557 LASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWH-KNKPTK 1615
Query: 613 ---KLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKSSTESEYRAMYAA 669
KL A SDA++ P + + + L +I KS K + S+TE+E A+ A
Sbjct: 1616 PDNKLVAISDASYGNQPYYKSQIGN-IFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEA 1674
Query: 670 CSEIIWLRGFLAELGFP*TEP--TSLYADNTSAI*FVANPVFHE-RTKLIEVDCHSIRDA 726
+ L + EL +P L D+ S I + + + R + +RD
Sbjct: 1675 IPLLNNLSHLVQELN---KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDE 1731
Query: 727 YDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGK 762
+ + ++ T+ IAD++TK +P + L K
Sbjct: 1732 VSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1767
Score = 53.5 bits (127), Expect = 2e-06
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 1 SMFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAE 60
++F L +++ QF + V + + D EY + ++ ++GI + + + +G+AE
Sbjct: 709 NVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAE 768
Query: 61 RKNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYS 120
R NR LL+ R+LL + +P W A+ + + N L S + S H LD +
Sbjct: 769 RLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND-KSARQHAGLAGLDIT 827
Query: 121 DLHTFGCVCFV--HLPPFEKHKLGV 143
+ FG V H P + H G+
Sbjct: 828 TILPFGQPVIVNNHNPDSKIHPRGI 852
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 83.6 bits (205), Expect = 2e-15
Identities = 43/102 (42%), Positives = 60/102 (58%)
Query: 267 SLTASLSSISIPTCYSQVVKDVRWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYS 326
SLT + + P +KD W +AM EE+ AL N TW +V P + +GCKWV+
Sbjct: 17 SLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFK 76
Query: 327 VKLNSDGSLNRYNARLVTLRNKQEYGIDYDETFAPVAKMTTV 368
KL+SDG+L+R ARLV QE GI + ET++PV + T+
Sbjct: 77 TKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATI 118
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 83.2 bits (204), Expect = 2e-15
Identities = 124/528 (23%), Positives = 222/528 (41%), Gaps = 61/528 (11%)
Query: 281 YSQVVKDV-RWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYN 339
Y++ +K+ ++I+A ++E+ L + TWD D K + K V +NS NR
Sbjct: 813 YNKDIKEKEKYIEAYHKEVNQLLKMNTWDTDKYY-DRKEIDPKRV----INSMFIFNRKR 867
Query: 340 ARLVTLRNKQEYGIDYDETFAPVAKMTTVH-------------------QMDVKNIFLHG 380
R I + +T+ + TVH Q+D+ + +L+
Sbjct: 868 DGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 927
Query: 381 DLAEDIYMTPPQGLFSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSL 440
D+ E++Y+ PP L + K + +LK+SLYGLKQ+ WYE S L+ C S
Sbjct: 928 DIKEELYIRPPPHLGMNDK-LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSC 986
Query: 441 FIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMK--DLGN----LHY-FLG 493
+ V + L+VDDM++ D +++ L + K +LG + Y LG
Sbjct: 987 VFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILG 1043
Query: 494 LEV-HSTSKGIFLHQHKYATYLISMAGLQSTNP----VDTPLEVNVKYHRDDGDILPDPL 548
LE+ + K + L T I + NP + P + + +D+ +I D
Sbjct: 1044 LEIKYQRGKYMKLGMENSLTEKIPKLNVP-LNPKGRKLSAPGQPGLYIDQDELEIDEDE- 1101
Query: 549 LYRQLVGSLN*LTIT--------RPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSS 600
Y++ V + L R D+ + + ++Q + P L +I+++ +
Sbjct: 1102 -YKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTR 1160
Query: 601 HCGLFFSIGNYP-----KLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVS 655
L + N P KL A SDA++ P + + + L +I KS K +
Sbjct: 1161 DKQLIWH-KNKPTEPDNKLVAISDASYGNQPYYKSQIGN-IYLLNGKVIGGKSTKASLTC 1218
Query: 656 KSSTESEYRAMYAACSEIIWLRGFLAELGF-P*TEPTSLYADNTSAI*FVANPVFHERTK 714
S+TE+E A+ + + L + EL P T+ + +T +I ++N R +
Sbjct: 1219 TSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISI-IISNNEEKFRNR 1277
Query: 715 LIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGK 762
+RD + + ++ T+ IAD++TK +P + L K
Sbjct: 1278 FFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 59.3 bits (142), Expect = 4e-08
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 35/304 (11%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+F L +++ QFQ+SV + + D EY + ++L+ GI + + +G+AER
Sbjct: 287 VFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAER 346
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
NR LLD R+ L + +P W A+ + + N L S + S H LD S
Sbjct: 347 LNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK-KSARQHAGLAGLDIST 405
Query: 122 LHTFGCVCFV--HLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCY--------DVSNHSFR 171
L FG V H P + H G+ + S + G++ Y D +N+
Sbjct: 406 LLPFGQPVIVNDHNPNSKIHPRGIPGYA---LHPSRNSYGYIIYLPSLKKTVDTTNYVIL 462
Query: 172 VSRNVTFFYNQFMLHSISPDINDITILPNFSIMPQSIER-----YKPEFTYVRKCIKQIP 226
+ + + D+N +T I I++ + + + + I+ P
Sbjct: 463 QGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDF-QSDIELHP 521
Query: 227 TAP---------PDTEPPPDPEPVEPRRSSRTS-RAPDRFSP-----DRYGSKHTSLTAS 271
P P PP + +R S+T+ RAP P + SK S T
Sbjct: 522 EQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTPQ 581
Query: 272 LSSI 275
+S+I
Sbjct: 582 ISNI 585
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 82.0 bits (201), Expect = 5e-15
Identities = 122/527 (23%), Positives = 223/527 (42%), Gaps = 59/527 (11%)
Query: 281 YSQVVKDV-RWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYN 339
Y++ +K+ ++I+A ++E+ L + TWD D K + K V +NS NR
Sbjct: 813 YNKDIKEKEKYIQAYHKEVNQLLKMKTWD-TDRYYDRKEIDPKRV----INSMFIFNRKR 867
Query: 340 ARLVTLRNKQEYGIDYDETFAPVAKMTTVH-------------------QMDVKNIFLHG 380
R I + +T+ P + TVH Q+D+ + +L+
Sbjct: 868 DGTHKARFVARGDIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 927
Query: 381 DLAEDIYMTPPQGLFSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSL 440
D+ E++Y+ PP L + K + +LK+SLYGLKQ+ WYE S L+ C S
Sbjct: 928 DIKEELYIRPPPHLGMNDK-LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSC 986
Query: 441 FIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMK--DLG----NLHY-FLG 493
+ V + L+VDDM++ D +++ L + K +LG + Y LG
Sbjct: 987 VFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILG 1043
Query: 494 LEV-HSTSKGIFLHQHKYATYLI-------SMAGLQSTNPVDTPLEVN---VKYHRDDGD 542
LE+ + K + L T I + G + + P L ++ ++ DD
Sbjct: 1044 LEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYK 1103
Query: 543 ILPDPLLYRQLVGSLN*LTIT-RPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSH 601
+ + ++L+G + + R D+ + + ++Q + P L +I+++ +
Sbjct: 1104 MKVHEM--QKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRD 1161
Query: 602 CGLFF----SIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKS 657
L + + KL SDA++ P + + + L +I KS K + S
Sbjct: 1162 KQLIWHKSKPVKPTNKLVVISDASYGNQPYYKSQIGN-IYLLNGKVIGGKSTKASLTCTS 1220
Query: 658 STESEYRAMYAACSEIIWLRGFLAELG-FP*TEPTSLYADNTSAI-*FVANPVFHERTKL 715
+TE+E A+ + + L + EL P T+ L D+ S I ++N R +
Sbjct: 1221 TTEAEIHAISESVPLLNNLSHLVQELNKKPITK--GLLTDSKSTISIIISNNEEKFRNRF 1278
Query: 716 IEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGK 762
+RD + + ++ T+ IAD++TK +P + L K
Sbjct: 1279 FGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 59.3 bits (142), Expect = 4e-08
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 35/304 (11%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+F L +++ QFQ+SV + + D EY + ++L+ GI + + +G+AER
Sbjct: 287 VFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAER 346
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
NR LLD R+ L + +P W A+ + + N L S + S H LD S
Sbjct: 347 LNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK-KSARQHAGLAGLDIST 405
Query: 122 LHTFGCVCFV--HLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCY--------DVSNHSFR 171
L FG V H P + H G+ + S + G++ Y D +N+
Sbjct: 406 LLPFGQPVIVNDHNPNSKIHPRGIPGYA---LHPSRNSYGYIIYLPSLKKTVDTTNYVIL 462
Query: 172 VSRNVTFFYNQFMLHSISPDINDITILPNFSIMPQSIER-----YKPEFTYVRKCIKQIP 226
+ + + D+N +T I I++ + + + + I+ P
Sbjct: 463 QGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDF-QSDIELHP 521
Query: 227 TAP---------PDTEPPPDPEPVEPRRSSRTS-RAPDRFSP-----DRYGSKHTSLTAS 271
P P PP + +R S+T+ RAP P + SK S T
Sbjct: 522 EQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTPQ 581
Query: 272 LSSI 275
+S+I
Sbjct: 582 ISNI 585
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 81.6 bits (200), Expect = 7e-15
Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 8/94 (8%)
Query: 560 LTITRPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSHCGLFFSIGNYPKLSAYSD 619
LTITRPD++F V ++SQF + R + AV +++ Y+KG+ GLF+S + +L A++D
Sbjct: 3 LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFAD 62
Query: 620 ANWAGCPDTRHSVTSWCMF--------LRSSLIS 645
++WA CPDTR SVT +C LR S++S
Sbjct: 63 SDWASCPDTRRSVTGFCSLVPLWFLGALRKSILS 96
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 80.5 bits (197), Expect = 2e-14
Identities = 122/527 (23%), Positives = 224/527 (42%), Gaps = 59/527 (11%)
Query: 281 YSQVVKDV-RWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYN 339
Y++ +K+ ++I+A ++E+ L + TWD D K + K V +NS NR
Sbjct: 813 YNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDKYY-DRKEIDPKRV----INSMFIFNRKR 867
Query: 340 ARLVTLRNKQEYGIDYDETFAPVAKMTTVH-------------------QMDVKNIFLHG 380
R I + +T+ + TVH Q+D+ + +L+
Sbjct: 868 DGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 927
Query: 381 DLAEDIYMTPPQGLFSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSL 440
D+ E++Y+ PP L + K + +LK+SLYGLKQ+ WYE S L+ C S
Sbjct: 928 DIKEELYIRPPPHLGMNDK-LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSC 986
Query: 441 FIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMK--DLG----NLHY-FLG 493
+ V + L+VDDMV+ + +R+ ++L + K +LG + Y LG
Sbjct: 987 VFENSQ---VTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILG 1043
Query: 494 LEV-HSTSKGIFLHQHKYATYLI-------SMAGLQSTNPVDTPLEVN---VKYHRDDGD 542
LE+ + K + L T I + G + + P L ++ ++ DD
Sbjct: 1044 LEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYK 1103
Query: 543 ILPDPLLYRQLVGSLN*LTIT-RPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSH 601
+ + ++L+G + + R D+ + + ++Q + P L +I+++ +
Sbjct: 1104 MKVHEM--QKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRD 1161
Query: 602 CGLFF----SIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKS 657
L + + KL SDA++ P + + + L +I KS K + S
Sbjct: 1162 KQLIWHKSKPVKPTNKLVVISDASYGNQPYYKSQIGN-IYLLNGKVIGGKSTKASLTCTS 1220
Query: 658 STESEYRAMYAACSEIIWLRGFLAELG-FP*TEPTSLYADNTSAI-*FVANPVFHERTKL 715
+TE+E A+ + + L + EL P T+ L D+ S I ++N R +
Sbjct: 1221 TTEAEIHAISESVPLLNNLSYLIQELDKKPITK--GLLTDSKSTISIIISNNEEKFRNRF 1278
Query: 716 IEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGK 762
+RD + + ++ T+ IAD++TK +P + L K
Sbjct: 1279 FGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 60.8 bits (146), Expect = 1e-08
Identities = 75/308 (24%), Positives = 119/308 (38%), Gaps = 43/308 (13%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+F L +++ QFQ+SV + + D EY + ++L+ GI + + +G+AER
Sbjct: 287 VFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAER 346
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
NR LLD R+ L + +P W A+ + + N L S + S H LD S
Sbjct: 347 LNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK-KSARQHAGLAGLDIST 405
Query: 122 LHTFGCVCFV--HLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCY--------DVSNHSFR 171
L FG V H P + H G+ + S + G++ Y D +N+
Sbjct: 406 LLPFGQPVIVNDHNPNSKIHPRGIPGYA---LHPSRNSYGYIIYLPSLKKTVDTTNYVIL 462
Query: 172 VSR-------------------NVTFFYNQFMLHSISPDINDITILPNFSIMPQSIERYK 212
+ +T Y+ F+ + ND+ I + QS
Sbjct: 463 QGKESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQQSNDLNIESDHDF--QSDIELH 520
Query: 213 PEFTYVRKCIKQIPTAPPDTEPPPDPEPVEPRRSSRTSRAPDRFSP-----DRYGSKHTS 267
PE +R + + +P D+ PP R S RAP P + SK S
Sbjct: 521 PE--QLRNVLSK-AVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRS 577
Query: 268 LTASLSSI 275
T +S I
Sbjct: 578 STPQISDI 585
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 80.5 bits (197), Expect = 2e-14
Identities = 123/530 (23%), Positives = 221/530 (41%), Gaps = 65/530 (12%)
Query: 281 YSQVVKDV-RWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYN 339
Y++ +K+ ++I+A ++E+ L + TWD D K + K V +NS N+
Sbjct: 813 YNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYY-DRKEIDPKRV----INSMFIFNKKR 867
Query: 340 ARLVTLRNKQEYGIDYDETFAPVAKMTTVH-------------------QMDVKNIFLHG 380
R I + +T+ + TVH Q+D+ + +L+
Sbjct: 868 DGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 927
Query: 381 DLAEDIYMTPPQGLFSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSL 440
D+ E++Y+ PP L + K + +LK+SLYGLKQ+ WYE S L+ C S
Sbjct: 928 DIKEELYIRPPPHLGMNDK-LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSC 986
Query: 441 FIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMK--DLGN----LHY-FLG 493
+ V + L+VDDM++ D +++ L + K +LG + Y LG
Sbjct: 987 VFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILG 1043
Query: 494 LEV-HSTSKGIFLHQHKYATYLISMAGLQSTNP----VDTPLEVNVKYHRDDGDILPDPL 548
LE+ + K + L T I + NP + P + + +D+ +I D
Sbjct: 1044 LEIKYQRGKYMKLGMENSLTEKIPKLNVP-LNPKGRKLSAPGQPGLYIDQDELEIDEDE- 1101
Query: 549 LYRQLVGSLN*LTIT--------RPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSS 600
Y++ V + L R D+ + + ++Q + P L +I+++ +
Sbjct: 1102 -YKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTR 1160
Query: 601 HCGLFFSIGNYP-----KLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVS 655
L + N P KL A SDA++ P + + + L +I KS K +
Sbjct: 1161 DKQLIWH-KNKPTEPDNKLVAISDASYGNQPYYKSQIGN-IYLLNGKVIGGKSTKASLTC 1218
Query: 656 KSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPT--SLYADNTSAI*FVANPVFHE-R 712
S+TE+E A+ + + L + EL +P L D+ S I + + + R
Sbjct: 1219 TSTTEAEIHAISESVPLLNNLSYLIQELN---KKPIIKGLLTDSRSTISIIKSTNEEKFR 1275
Query: 713 TKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGK 762
+ +RD + + ++ T+ IAD++TK +P + L K
Sbjct: 1276 NRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1325
Score = 59.3 bits (142), Expect = 4e-08
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 35/304 (11%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+F L +++ QFQ+SV + + D EY + ++L+ GI + + +G+AER
Sbjct: 287 VFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAER 346
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
NR LLD R+ L + +P W A+ + + N L S + S H LD S
Sbjct: 347 LNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK-KSARQHAGLAGLDIST 405
Query: 122 LHTFGCVCFV--HLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCY--------DVSNHSFR 171
L FG V H P + H G+ + S + G++ Y D +N+
Sbjct: 406 LLPFGQPVIVNDHNPNSKIHPRGIPGYA---LHPSRNSYGYIIYLPSLKKTVDTTNYVIL 462
Query: 172 VSRNVTFFYNQFMLHSISPDINDITILPNFSIMPQSIER-----YKPEFTYVRKCIKQIP 226
+ + + D+N +T I I++ + + + + I+ P
Sbjct: 463 QGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDF-QSDIELHP 521
Query: 227 TAP---------PDTEPPPDPEPVEPRRSSRTS-RAPDRFSP-----DRYGSKHTSLTAS 271
P P PP + +R S+T+ RAP P + SK S T
Sbjct: 522 EQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTPQ 581
Query: 272 LSSI 275
+S+I
Sbjct: 582 ISNI 585
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 80.1 bits (196), Expect = 2e-14
Identities = 122/527 (23%), Positives = 224/527 (42%), Gaps = 59/527 (11%)
Query: 281 YSQVVKDV-RWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYN 339
Y++ +K+ ++I+A ++E+ L + TWD D K + K V +NS N+
Sbjct: 1240 YNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYY-DRKEIDPKRV----INSMFIFNKKR 1294
Query: 340 ARLVTLRNKQEYGIDYDETFAPVAKMTTVH-------------------QMDVKNIFLHG 380
R I + +T+ + TVH Q+D+ + +L+
Sbjct: 1295 DGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 1354
Query: 381 DLAEDIYMTPPQGLFSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSL 440
D+ E++Y+ PP L + K + +LK+SLYGLKQ+ WYE S L+ C S
Sbjct: 1355 DIKEELYIRPPPHLGMNDK-LIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSC 1413
Query: 441 FIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMK--DLG----NLHY-FLG 493
+ V + L+VDDMV+ + +R+ E+L + K +LG + Y LG
Sbjct: 1414 VFKNSQ---VTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILG 1470
Query: 494 LEV-HSTSKGIFLHQHKYATYLI-------SMAGLQSTNPVDTPLEVN---VKYHRDDGD 542
LE+ + K + L T I + G + + P L ++ ++ DD
Sbjct: 1471 LEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYK 1530
Query: 543 ILPDPLLYRQLVGSLN*LTIT-RPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSSH 601
+ + ++L+G + + R D+ + + ++Q + P L +I+++ +
Sbjct: 1531 MKVHEM--QKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRD 1588
Query: 602 CGLFF----SIGNYPKLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVSKS 657
L + + KL SDA++ P + + + L +I KS K + S
Sbjct: 1589 KQLIWHKSKPVKPTNKLVVISDASYGNQPYYKSQIGN-IYLLNGKVIGGKSTKASLTCTS 1647
Query: 658 STESEYRAMYAACSEIIWLRGFLAELG-FP*TEPTSLYADNTSAI-*FVANPVFHERTKL 715
+TE+E A+ + + L + EL P T+ L D+ S I ++N R +
Sbjct: 1648 TTEAEIHAISESVPLLNNLSYLIQELDKKPITK--GLLTDSKSTISIIISNNEEKFRNRF 1705
Query: 716 IEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGK 762
+RD + + ++ T+ IAD++TK +P + L K
Sbjct: 1706 FGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 59.3 bits (142), Expect = 4e-08
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 35/304 (11%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+F L +++ QFQ+SV + + D EY + ++L+ GI + + +G+AER
Sbjct: 714 VFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAER 773
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
NR LLD R+ L + +P W A+ + + N L S + S H LD S
Sbjct: 774 LNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK-KSARQHAGLAGLDIST 832
Query: 122 LHTFGCVCFV--HLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCY--------DVSNHSFR 171
L FG V H P + H G+ + S + G++ Y D +N+
Sbjct: 833 LLPFGQPVIVNDHNPNSKIHPRGIPGYA---LHPSRNSYGYIIYLPSLKKTVDTTNYVIL 889
Query: 172 VSRNVTFFYNQFMLHSISPDINDITILPNFSIMPQSIER-----YKPEFTYVRKCIKQIP 226
+ + + D+N +T I I++ + + + + I+ P
Sbjct: 890 QGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQQSDDLNIESDHDF-QSDIELHP 948
Query: 227 TAP---------PDTEPPPDPEPVEPRRSSRTS-RAPDRFSP-----DRYGSKHTSLTAS 271
P P PP + +R S+T+ RAP P + SK S T
Sbjct: 949 EQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTPQ 1008
Query: 272 LSSI 275
+S+I
Sbjct: 1009 ISNI 1012
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 78.2 bits (191), Expect = 8e-14
Identities = 122/530 (23%), Positives = 220/530 (41%), Gaps = 65/530 (12%)
Query: 281 YSQVVKDV-RWIKAMNEEIQALQENLTWDIVSCPPDIKPMGCKWVYSVKLNSDGSLNRYN 339
Y++ +K+ ++I+A ++E+ L + TWD D K + K V +NS N+
Sbjct: 1240 YNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYY-DRKEIDPKRV----INSMFIFNKKR 1294
Query: 340 ARLVTLRNKQEYGIDYDETFAPVAKMTTVH-------------------QMDVKNIFLHG 380
R I + +T+ + TVH Q+D+ + +L+
Sbjct: 1295 DGTHKARFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYA 1354
Query: 381 DLAEDIYMTPPQGLFSSSKGVCKLKRSLYGLKQAPRAWYEKFCSSLLGFCFSHSQYNSSL 440
D+ E++Y+ PP L + K + +LK+S YGLKQ+ WYE S L+ C S
Sbjct: 1355 DIKEELYIRPPPHLGMNDK-LIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRGWSC 1413
Query: 441 FIHRTSTGIVLLLLYVDDMVITGSDNAFIQRLKEQLHASFHMK--DLGN----LHY-FLG 493
+ V + L+VDDM++ D +++ L + K +LG + Y LG
Sbjct: 1414 VFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILG 1470
Query: 494 LEV-HSTSKGIFLHQHKYATYLISMAGLQSTNP----VDTPLEVNVKYHRDDGDILPDPL 548
LE+ + K + L T I + NP + P + + +D+ +I D
Sbjct: 1471 LEIKYQRGKYMKLGMENSLTEKIPKLNVP-LNPKGRKLSAPGQPGLYIDQDELEIDEDE- 1528
Query: 549 LYRQLVGSLN*LTIT--------RPDISFVVQQVSQFMHSPRHLHLAAVRRIIRYLKGSS 600
Y++ V + L R D+ + + ++Q + P L +I+++ +
Sbjct: 1529 -YKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTR 1587
Query: 601 HCGLFFSIGNYP-----KLSAYSDANWAGCPDTRHSVTSWCMFLRSSLISWKSKKQARVS 655
L + N P KL A SDA++ P + + + L +I KS K +
Sbjct: 1588 DKQLIWH-KNKPTEPDNKLVAISDASYGNQPYYKSQIGN-IFLLNGKVIGGKSTKASLTC 1645
Query: 656 KSSTESEYRAMYAACSEIIWLRGFLAELGFP*TEPT--SLYADNTSAI*FVANPVFHE-R 712
S+TE+E A+ + + L + EL +P L D+ S I + + + R
Sbjct: 1646 TSTTEAEIHAISESVPLLNNLSYLIQELN---KKPIIKGLLTDSRSTISIIKSTNEEKFR 1702
Query: 713 TKLIEVDCHSIRDAYDE*LISLPHVSTQLQIADILTKAVPRPRHQFLVGK 762
+ +RD + + ++ T+ IAD++TK +P + L K
Sbjct: 1703 NRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1752
Score = 60.5 bits (145), Expect = 2e-08
Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 43/308 (13%)
Query: 2 MFKKFLTYVETQFQSSVKIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAER 61
+F L +++ QFQ+SV + + D EY + ++L+ GI + + +G+AER
Sbjct: 714 VFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAER 773
Query: 62 KNRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSD 121
NR LLD R+ L + +P W A+ + + N L S + S H LD S
Sbjct: 774 LNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK-KSARQHAGLAGLDIST 832
Query: 122 LHTFGCVCFV--HLPPFEKHKLGVQSVQCAFMGYSNSHKGFVCY--------DVSNHSFR 171
L FG V H P + H G+ + S + G++ Y D +N+
Sbjct: 833 LLPFGQPVIVNDHNPNSKIHPRGIPGYA---LHPSRNSYGYIIYLPSLKKTVDTTNYVIL 889
Query: 172 VSR-------------------NVTFFYNQFMLHSISPDINDITILPNFSIMPQSIERYK 212
+ +T Y F+ + + ND+ I + QS
Sbjct: 890 QGKESRLDQFNYDALTFDEDLNRLTASYQSFIASNEIQESNDLNIESDHDF--QSDIELH 947
Query: 213 PEFTYVRKCIKQIPTAPPDTEPPPDPEPVEPRRSSRTSRAPDRFSP-----DRYGSKHTS 267
PE + + +P D+ PP R S RAP P + SK S
Sbjct: 948 PE---QPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRS 1004
Query: 268 LTASLSSI 275
T +S+I
Sbjct: 1005 STPQISNI 1012
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 48.9 bits (115), Expect = 5e-05
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 63 NRHLLDVTRSLLF*AFIPPRFWVEALATTVFLINRLPSIVIEFDSPFFHLFKFQLDYSDL 122
NR +++ RS+L +P F +A T V +IN+ PS I F P F+ YS L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 123 HTFGCVCFVH 132
FGCV ++H
Sbjct: 62 RRFGCVAYIH 71
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 39.7 bits (91), Expect = 0.030
Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 3/78 (3%)
Query: 19 KIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLLF*AF 78
K+ SD + S F ++ + KGI + S P PQ +G ERKN D+ R L
Sbjct: 942 KVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNS---DIKRLLTKLLI 998
Query: 79 IPPRFWVEALATTVFLIN 96
P W + L +N
Sbjct: 999 GRPAKWYDLLPVVQLALN 1016
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 39.3 bits (90), Expect = 0.040
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 19 KIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLLF*AF 78
K+ SD + S F ++ ++KGI + S P PQ +G ERKN D+ R L
Sbjct: 944 KVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNS---DIKRLLTKLLV 1000
Query: 79 IPPRFWVEALATTVFLIN 96
P W + L +N
Sbjct: 1001 GRPAKWYDLLPVVQLALN 1018
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 38.9 bits (89), Expect = 0.052
Identities = 25/87 (28%), Positives = 37/87 (41%), Gaps = 3/87 (3%)
Query: 19 KIFRSDSSGEYMSHEFQEYLQHKGILSQRSCPNTPQQNGLAERKNRHLLDVTRSLLF*AF 78
K+ SD + S F E+ + +GI + S P PQ ERKN D+ R L
Sbjct: 734 KVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNS---DIKRLLTKLLV 790
Query: 79 IPPRFWVEALATTVFLINRLPSIVIEF 105
P W + L +N S V+++
Sbjct: 791 GRPTKWYDLLPVVQLALNNTYSPVLKY 817
>GUN2_BACS4 (P06565) Endoglucanase B (EC 3.2.1.4)
(Endo-1,4-beta-glucanase) (Cellulase)
Length = 409
Score = 35.8 bits (81), Expect = 0.44
Identities = 20/48 (41%), Positives = 25/48 (51%), Gaps = 9/48 (18%)
Query: 213 PEFTYVRKCIKQIPTAPP-DTEPPPDPEPVEPRRSSRTSRAPDRFSPD 259
P T+VR+ I++ T PP D PP DP+P EP PD PD
Sbjct: 317 PSGTFVREKIRESATTPPSDPTPPSDPDPGEPE--------PDPGEPD 356
>EXPA_DROME (Q07436) Expanded protein
Length = 1429
Score = 34.7 bits (78), Expect = 0.98
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 192 INDITILPNFSIMPQSIERYKPEFTYVRKCIKQIPTAPPDTEPPPDP-EPVEPRRSSRTS 250
+N + +LP +P P YV + +K+ P P +PPP P +P+ R S
Sbjct: 1186 LNSLDLLPKGKRLPPP-----PPPPYVNRRLKKPPMPAPSEKPPPIPSKPIPSRMSPIPP 1240
Query: 251 RAPDRFSPDRYGSKHTSLTA 270
R P +P S T ++
Sbjct: 1241 RKPPTLNPHHANSPLTKTSS 1260
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,367,148
Number of Sequences: 164201
Number of extensions: 3819580
Number of successful extensions: 15363
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 15158
Number of HSP's gapped (non-prelim): 139
length of query: 770
length of database: 59,974,054
effective HSP length: 118
effective length of query: 652
effective length of database: 40,598,336
effective search space: 26470115072
effective search space used: 26470115072
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC144727.8