Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144726.5 - phase: 0 /pseudo
         (293 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TSNX_HUMAN (Q99598) Translin-associated protein X (Translin-asso...   127  4e-29
Y175_METJA (Q57639) Hypothetical protein MJ0175                        54  6e-07
TSN_CHICK (P79769) Translin                                            39  0.012
MLP2_YEAST (P40457) MLP2 protein (Myosin-like protein 2)               37  0.058
RPA1_METVA (P41556) DNA-directed RNA polymerase subunit A' (EC 2...    35  0.17
RPA1_METJA (Q58445) DNA-directed RNA polymerase subunit A' (EC 2...    35  0.17
IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B ...    34  0.49
HXD4_BRARE (O57374) Homeobox protein Hox-D4                            33  1.1
DAPA_PASMU (Q9CLZ7) Dihydrodipicolinate synthase (EC 4.2.1.52) (...    32  1.4
SYC_THETN (Q8R7T3) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst...    32  1.9
SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t...    32  2.4
PNCB_BUCAP (Q8K9I6) Nicotinate phosphoribosyltransferase (EC 2.4...    32  2.4
OE66_NPVAC (Q00704) Occlusion-derived virus envelope protein E66...    31  3.2
NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2)...    31  3.2
HEAD_BPGA1 (Q9FZW7) Major head protein                                 31  3.2
RPOA_MYCSP (P38018) DNA-directed RNA polymerase alpha chain (EC ...    31  4.1
PIB1_BOVIN (P10894) 1-phosphatidylinositol-4,5-bisphosphate phos...    31  4.1
OE66_NPVOP (O10305) Occlusion-derived virus envelope protein E66...    30  5.4
MYS2_SCHPO (Q9USI6) Myosin type II heavy chain 1                       30  5.4
MAK_RAT (P20793) Serine/threonine-protein kinase MAK (EC 2.7.1.3...    30  5.4

>TSNX_HUMAN (Q99598) Translin-associated protein X
           (Translin-associated factor X)
          Length = 290

 Score =  127 bits (318), Expect = 4e-29
 Identities = 77/220 (35%), Positives = 127/220 (57%), Gaps = 21/220 (9%)

Query: 72  FTKYTEYLNNLNDKRERVVKASRDITMNSKKVIFQVHRM-SKYNKDEVLEKAEKDLAAVT 130
           F  + + L+  +DK ER+VK SRDIT+ SK+ IF +HR+ S  + +++L ++E  L  V 
Sbjct: 39  FKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV- 97

Query: 131 NQHVSRLVKELQGTDFWKLRRAYSPGIQEYVEAATFCSFCKNGTLLKLDEINKTLL---- 186
            Q + ++ +EL G D  +  RA + G+QEYVEA +F  F K  +L+ +DEINK L+    
Sbjct: 98  RQKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTE 157

Query: 187 --------PLSDPSLQP-----LQINILDYILGLADLTGELMRLAIGRISDGELEFAEKI 233
                   P SD   +      L++  +DY+LG+ADLTGELMR+ I  + +G+++   ++
Sbjct: 158 DNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEV 217

Query: 234 CSFARDIYRELTLVVPHMDDSSDMKTKMETMLQSVMKIEN 273
             F R +Y   + +        ++  K+ T+ QS+ K+EN
Sbjct: 218 SQFLRQVYDGFSFI--GNTGPYEVSKKLYTLKQSLAKVEN 255


>Y175_METJA (Q57639) Hypothetical protein MJ0175
          Length = 222

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 28/169 (16%)

Query: 78  YLNNLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQHVSRL 137
           YL N +  RE ++K SR+IT +   +I ++H+    +KDE  +K  +         +S  
Sbjct: 27  YLANKDSVREEILKLSREITRDCAMLIRKIHKSD--DKDEFKDKLNE---------ISEK 75

Query: 138 VKELQG-TDFWKLRRAYSPGIQEYVEAATFCSFCKNGTLLKLDEINKTLLPLSDPSLQPL 196
           +K+L     F +     S   QE+VEA +         ++K D  NK       PS + L
Sbjct: 76  IKKLNSLATFPEFVGYLSTPQQEFVEALSLY-------MIKFD--NKI------PSFKEL 120

Query: 197 Q-INILDYILGLADLTGELMRLAIGRISDGELEFAEKICSFARDIYREL 244
             I   +YILGLAD+ GEL R  +  + +  L   E+   F  D+Y  L
Sbjct: 121 DFIKEENYILGLADVIGELRREVLEAMKNDNLAEVERYFKFMEDLYEFL 169


>TSN_CHICK (P79769) Translin
          Length = 229

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 40/198 (20%), Positives = 89/198 (44%), Gaps = 15/198 (7%)

Query: 84  DKRERVVKASRDITMNSKKVIFQ---VHRMSKYNK-DEVLEKAEKDLAAVTNQHVSRLVK 139
           D RE + K  + +   +++++     VH+ + +    +  +KA +    V  Q  S L  
Sbjct: 19  DIREEIRKVVQALEQTAREMLTLPQGVHQGAGFQDIPKKCQKAREHFGTVRTQMES-LKT 77

Query: 140 ELQGTDFWKLRRAYSPGIQEYVEAATFCSFCKNGTLLKLDEINKTLLPLSDPSLQPLQIN 199
           +     +++    +   +Q  V  A+F  + +  TL+  + + + +L +     +   ++
Sbjct: 78  KFPADQYYRFHEHWRFVLQRLVFLASFVVYLETETLVTREAVAE-ILGIEADRERGFHLD 136

Query: 200 ILDYILGLADLTGELMRLAIGRISDGELEFAEKICSFARDI---YRELTLVVPHMDDSSD 256
           I DY+ G+  L  EL RLA+  ++ G+     +I +F  ++   +R L L       +  
Sbjct: 137 IEDYLSGVLTLASELARLAVNSVTAGDYSRPLRISTFINELDSGFRLLNL------KNDS 190

Query: 257 MKTKMETMLQSVMKIENV 274
           ++ + + +   V KIE V
Sbjct: 191 LRKRYDGLKYDVKKIEEV 208


>MLP2_YEAST (P40457) MLP2 protein (Myosin-like protein 2)
          Length = 1679

 Score = 37.0 bits (84), Expect = 0.058
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 19   EKTQRLHQSILLFFDFGFSTVTGTNFQNTSKRPKTMSIATDTATVTDSAMKEPFTKYTEY 78
            ++TQ L +      ++  S V    F++ +K    ++I  +   +   ++K    K  E 
Sbjct: 1143 QRTQTLSEK-----EYQCSAVIIDEFKDITKEVTQVNILKENNAILQKSLKNVTEKNREI 1197

Query: 79   LNNLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQHVSRLV 138
               LND++E + +  RD+    ++V    +++  Y       ++E +      Q +S+  
Sbjct: 1198 YKQLNDRQEEISRLQRDLIQTKEQVSINSNKILVY-------ESEMEQCKQRYQDLSQQQ 1250

Query: 139  KELQGTDFWKLRRAYS 154
            K+ Q  D  KL    S
Sbjct: 1251 KDAQKKDIEKLTNEIS 1266


>RPA1_METVA (P41556) DNA-directed RNA polymerase subunit A' (EC
           2.7.7.6)
          Length = 889

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 195 PLQINILDYILGLADLTGELMRLAIGRISD-----GELEFAEKIC--SFARDIYRELTLV 247
           P+   ++D  LG+ D  G + +   GR+       G +E ++ +    FA+DIY+ L  V
Sbjct: 43  PIDGGLMDTRLGVID-PGLVCKSCSGRVGTCPGHFGHIELSKSVIHIGFAKDIYKLLKAV 101

Query: 248 VPHMDDSSDMKTKMETMLQSVMKIE 272
            PH    +  + K +  L+ ++K+E
Sbjct: 102 CPHCGKVTVTEIKRDEYLEKMLKLE 126


>RPA1_METJA (Q58445) DNA-directed RNA polymerase subunit A' (EC
           2.7.7.6) [Contains: Mja rpoA1 intein (Mja rpol A'
           intein)]
          Length = 1341

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 195 PLQINILDYILGLADLTGELMRLAIGRISD-----GELEFAEKIC--SFARDIYRELTLV 247
           P+   ++D  LG+ D  G + +   GRI +     G +E A+ +    FA+ IY+ L  V
Sbjct: 43  PIDGGLMDTRLGVID-PGLVCKTCGGRIGECPGHFGHIELAKPVIHIGFAKTIYKILKAV 101

Query: 248 VPHMDDSSDMKTKMETMLQSVMKIE 272
            PH    +  +TK + +L+ + K+E
Sbjct: 102 CPHCGRVAISETKRKEILEKMEKLE 126


>IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B
           (eIF-4B)
          Length = 436

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 33  DFGFSTVTGTNFQNTSKRPKTMSIATDTATVTDSAMKEPFTKYTEYLNNLNDKRERVVKA 92
           D  +S   G+NFQ++S+ P+      + A    +A    F K  +  N   D R    K 
Sbjct: 311 DIDWSAARGSNFQSSSRPPRREREKEEPALDWGAARGAQFGKPQQTKNTYKD-RSLTNKK 369

Query: 93  SRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQHVSRLVKELQ 142
           + D     +K ++ V R    ++D   E+AEK         V   V++LQ
Sbjct: 370 TTDEQPKIQKSVYDVLRTEDDDED---EEAEKQNGDAKENKVDAAVEKLQ 416


>HXD4_BRARE (O57374) Homeobox protein Hox-D4
          Length = 236

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 11/106 (10%)

Query: 39  VTGTNFQNTSKRPKTMSIATDTATVTDSAMKEPFTKYTEYLNNLNDKRERVVKASRDITM 98
           VT  N   T   PK    A     V +   +  F +Y          R R ++++  +++
Sbjct: 134 VTTVNPDYTGPEPKRSRTAYTRQQVLELEKEFHFNRYLT--------RRRRIESAHTLSL 185

Query: 99  NSK--KVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQHVSRLVKELQ 142
           + +  K+ FQ  RM K+ KD  L   +   A+V NQH     K+ Q
Sbjct: 186 SERQIKIWFQNRRM-KWKKDHKLPNTKGRSASVGNQHAQHAQKDSQ 230


>DAPA_PASMU (Q9CLZ7) Dihydrodipicolinate synthase (EC 4.2.1.52)
           (DHDPS)
          Length = 298

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 27/137 (19%)

Query: 107 VHRMSKYNKDEVLEKAEKDLAAVTNQHVSRLVKELQGTDFWKLRRAYSPGIQEY------ 160
           V R++K N    +++A  DL+ V        +KEL G DF  L    + G++        
Sbjct: 154 VARLAKINNIVAIKEATGDLSRVAK------IKELAGEDFIFLSGDDATGLESIKLGGQG 207

Query: 161 ----------VEAATFCSFCKNGTLLKLDEINKTLLPLSD---PSLQPLQINILDYILGL 207
                      + A  C    NG   + ++IN+ L+ L         P+ +    Y LGL
Sbjct: 208 VISVTNNVAAADMAKMCHLALNGQFEEAEQINQRLMALHKNLFVESNPIPVKWAAYRLGL 267

Query: 208 ADLTGELMRLAIGRISD 224
            D     +RL +  +S+
Sbjct: 268 IDT--PTLRLPLTTLSE 282


>SYC_THETN (Q8R7T3) Cysteinyl-tRNA synthetase (EC 6.1.1.16)
           (Cysteine--tRNA ligase) (CysRS)
          Length = 467

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 18/182 (9%)

Query: 64  TDSAMKEPFTKYTEYLNNLNDKRERVVKAS------RDITMNSKKVIFQVHRMSKYNKD- 116
           +++A  +PF+KY  ++  LN   E++ K+       R++T      + ++  +  + +  
Sbjct: 240 SEAAYDQPFSKYWMHIGYLNVNNEKMSKSKGNFFTVRELTEKYDPEVLRLFMLMAHYRSP 299

Query: 117 -----EVLEKAEKDLAAVTN-----QHVSRLVKELQGTDFWKLRRAYSPGIQEYVEAATF 166
                ++L++A+     ++N     +H++ + K+ + +D  K         ++  E A  
Sbjct: 300 INFSLDLLDQAKSAYERLSNAVVNLKHLANITKDRELSDEEKDLIVKFDEYKKQFEEAMD 359

Query: 167 CSFCKNGTLLKLDEINKTL-LPLSDPSLQPLQINILDYILGLADLTGELMRLAIGRISDG 225
             F     +  L E+ KT    LS  S + L   IL+  L L+D+ G   + A   I D 
Sbjct: 360 DDFNTADAISVLFEMAKTANANLSGNSSKKLVEYILEMFLKLSDVLGLSYKNAETEIEDE 419

Query: 226 EL 227
           E+
Sbjct: 420 EI 421


>SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA
           ligase) (ValRS)
          Length = 955

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 13/119 (10%)

Query: 78  YLNNLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKD----EVLEKAEKDLAAV---- 129
           +L N+N ++E+V+K +  +  N   +        KY+KD    E+++ AE  +  +    
Sbjct: 825 FLYNINSEQEKVIKENISLIKNISFLDKITILSEKYDKDLCIKEIIDGAEIIIPILKLVD 884

Query: 130 TNQHVSRLVKELQGTD--FWKLR-RAYSPGIQEYVEAATFCSFCKNGTLLKLDEINKTL 185
           T   + RLVKE + T+   +K++ +  +     Y  A T     +   LLKL+EIN  L
Sbjct: 885 TKVELKRLVKEQKKTELNIFKIKTKILNKDFLSY--APTKIVTQEKNKLLKLNEINLKL 941


>PNCB_BUCAP (Q8K9I6) Nicotinate phosphoribosyltransferase (EC
           2.4.2.11) (NAPRTase)
          Length = 398

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 79  LNNLNDKRERVVKASRDITMNSKKVI-FQVHRMSKYNKDEVLEKAEKD----LAAVTNQH 133
           + +LN K +   K +RD+ ++  K++ F   R   Y+    + K  KD    L   +N H
Sbjct: 147 VQHLNKKLKEFFKKNRDVDLSRLKIVDFGTRRRFSYDVQYSIIKRLKDTFPFLIGSSNYH 206

Query: 134 VSRLVKEL 141
           +SR++K L
Sbjct: 207 ISRILKLL 214


>OE66_NPVAC (Q00704) Occlusion-derived virus envelope protein E66
           (ODV-E66)
          Length = 704

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 80  NNLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDE 117
           N+LN+   RV+  SRD ++N+  + F+  R++  N  E
Sbjct: 510 NSLNNTNGRVIVLSRDTSVNTNDLSFEAQRINNNNSSE 547


>NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2)
           (p95)
          Length = 720

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 34  FGFSTVTGTNFQNTSKRPKTMSIATDTATVTDSAMKEPFTKYTEYLNNLNDKRERVV--K 91
           F FS+ T T  Q  SK P +++ AT T    +S  +  FT  T++  +  + +   V  +
Sbjct: 247 FSFSSATSTTEQTKSKNPLSLTEATKTNVDNNSKAEASFTFGTKHAADSQNNKPSFVFGQ 306

Query: 92  ASRDITMNSKKVIFQVHRMSKYNKDEVLEKAEKDLAAVTN 131
           A+   ++      F    + K N +     ++ + ++ +N
Sbjct: 307 AAAKPSLEKSSFTFGSTTIEKKNDENSTSNSKPEKSSDSN 346


>HEAD_BPGA1 (Q9FZW7) Major head protein
          Length = 472

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 24/97 (24%), Positives = 45/97 (45%), Gaps = 8/97 (8%)

Query: 188 LSDPSLQPLQINILDYILGLADLTGELMRLAIGRISDGELEFAEKICSFARDIYRELTLV 247
           L+D +LQ   I+ L   +GL  +  +LM+  +     G LE+  KI     D+ RE    
Sbjct: 52  LADKTLQNDFIHTLVDRIGLVVVHHKLMQNPLKIFKKGTLEYGRKIEEIFTDLTRE---- 107

Query: 248 VPHMDDSSDMKTKMETMLQSVMKIENVFMSEDQSIYH 284
             H+ D    K + E   + +  ++ +F   D+ +++
Sbjct: 108 --HVYDPE--KAETEVFKREIPNVKTLFHERDRQVFY 140


>RPOA_MYCSP (P38018) DNA-directed RNA polymerase alpha chain (EC
           2.7.7.6) (RNAP alpha subunit) (Transcriptase alpha
           chain) (RNA polymerase alpha subunit)
          Length = 353

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 22/82 (26%), Positives = 40/82 (47%), Gaps = 2/82 (2%)

Query: 77  EYLNNLNDKRERVVKASRDITMNSKKVIFQ-VHRMSKYNK-DEVLEKAEKDLAAVTNQHV 134
           E      +K+ER +K++  IT     V  +   R +KYN  +EVL  ++++L+ + N   
Sbjct: 251 ELFEENKEKKEREIKSTTPITKLGLSVRSENALRRAKYNTVEEVLGLSDEELSNIKNLGK 310

Query: 135 SRLVKELQGTDFWKLRRAYSPG 156
             +   ++  + WK R  Y  G
Sbjct: 311 KSIQDIIEKRNEWKERIGYDDG 332


>PIB1_BOVIN (P10894) 1-phosphatidylinositol-4,5-bisphosphate
            phosphodiesterase beta 1 (EC 3.1.4.11) (Phosphoinositide
            phospholipase C) (PLC-beta-1) (Phospholipase C-beta-1)
            (PLC-I) (PLC-154)
          Length = 1216

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 36/129 (27%), Positives = 56/129 (42%), Gaps = 20/129 (15%)

Query: 64   TDSAMKEPFTKYTEYLNNLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDEVLEKAE 123
            T   +KE  TKY E  N+   +R  + K ++    ++KK      +    + D V    E
Sbjct: 941  TTDLIKEHTTKYNEIQNDYLRRRAALEKTAK---KDNKK------KSEPSSPDHVSSTIE 991

Query: 124  KDLAAVTNQHVSRLV--KELQGTDFWKLRRA--YSPGIQ--EYV-----EAATFCSFCKN 172
            +DLAA+  +   +LV  K+ Q      LR+   YS   Q  E++     +       C+N
Sbjct: 992  QDLAALDAEMTQKLVDLKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEECQN 1051

Query: 173  GTLLKLDEI 181
              L KL EI
Sbjct: 1052 NQLKKLKEI 1060


>OE66_NPVOP (O10305) Occlusion-derived virus envelope protein E66
           (ODV-E66)
          Length = 682

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 80  NNLNDKRERVVKASRDITMNSKKVIFQVHRMSKYNKDE 117
           N+LN+   RVV  SRD ++N+  + F+  R++  N  +
Sbjct: 487 NSLNNVNGRVVVLSRDTSVNTNDLSFEAQRLNNNNSSD 524


>MYS2_SCHPO (Q9USI6) Myosin type II heavy chain 1
          Length = 1526

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 9/125 (7%)

Query: 42   TNFQNTSKRPKTMSIATDTATVTDSAMKEPFTKYTEYLNNLNDKRERVVKASRDITMNS- 100
            TNFQ  SK+ + ++   ++     ++ KE  +  +    +L++K   + K   +++  + 
Sbjct: 1189 TNFQELSKKHRDLTFNHESLLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNELSPKAS 1248

Query: 101  ------KKVIFQVHRMSKYNKDEVLEKAEKDLAAVTNQHVSRLVKELQGTDFWKLRRAYS 154
                  +K+   +H  S+  K    EK +  +A+  N+ +  L  EL+     KL   Y 
Sbjct: 1249 KVPELERKITNLMHEYSQLGKTFEDEKRKALIASRDNEELRSLKSELESKR--KLEVEYQ 1306

Query: 155  PGIQE 159
              ++E
Sbjct: 1307 KVLEE 1311


>MAK_RAT (P20793) Serine/threonine-protein kinase MAK (EC 2.7.1.37)
           (Male germ cell-associated kinase)
          Length = 622

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 32  FDFGFSTVTGTNFQNTSKRPKTMSIATDTATVTDSAMKEPFTKYTEYLNNLNDKRERVVK 91
           F F  + +  +N      R    S+ +DT   T S  K+ + K + YL  +N K   +V 
Sbjct: 438 FRFPEAGLPVSNHLKGENRNLHASLKSDTNLSTASTAKQYYLKQSRYLPGVNPKNVSLVA 497

Query: 92  ASRDITMNS 100
             +DI  +S
Sbjct: 498 GGKDINSHS 506


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,310,204
Number of Sequences: 164201
Number of extensions: 1178582
Number of successful extensions: 3833
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3814
Number of HSP's gapped (non-prelim): 35
length of query: 293
length of database: 59,974,054
effective HSP length: 109
effective length of query: 184
effective length of database: 42,076,145
effective search space: 7742010680
effective search space used: 7742010680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)


Medicago: description of AC144726.5