BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144726.11 + phase: 0 
         (515 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RPO1_NICSY (Q93Y94) DNA-directed RNA polymerase 1, mitochondrial...   516  e-146
RPO2_NICSY (Q8VWF8) DNA-directed RNA polymerase 2, chloroplast/m...   487  e-137
RPOM_ARATH (P92969) DNA-directed RNA polymerase, mitochondrial p...   476  e-134
RPO3_NICSY (Q8L4F8) DNA-directed RNA polymerase 3, chloroplast p...   374  e-103
RPOT_ARATH (O24600) DNA-directed RNA polymerase, chloroplast pre...   362  1e-99
RPOM_YEAST (P13433) DNA-directed RNA polymerase, mitochondrial p...   108  4e-23
RPOM_SCHPO (O13993) DNA-directed RNA polymerase, mitochondrial p...    94  1e-18
RPOM_NEUCR (P38671) DNA-directed RNA polymerase, mitochondrial p...    93  1e-18
RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial p...    68  5e-11
RPOL_BPT3 (P07659) DNA-directed RNA polymerase (EC 2.7.7.6)            68  6e-11
RPOL_BPK11 (P18147) DNA-directed RNA polymerase (EC 2.7.7.6)           67  8e-11
RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial p...    67  1e-10
RPOL_BPT7 (P00573) DNA-directed RNA polymerase (EC 2.7.7.6)            65  4e-10
RPOL_BPSP6 (P06221) DNA-directed RNA polymerase (EC 2.7.7.6)           63  2e-09
U2R1_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary...    45  6e-04
BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B a...    44  0.001
U2R2_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary...    40  0.011
MOES_MOUSE (P26041) Moesin (Membrane-organizing extension spike ...    38  0.055
MOES_HUMAN (P26038) Moesin (Membrane-organizing extension spike ...    38  0.072
MOES_RAT (O35763) Moesin (Membrane-organizing extension spike pr...    37  0.094

>RPO1_NICSY (Q93Y94) DNA-directed RNA polymerase 1, mitochondrial
           precursor (EC 2.7.7.6) (T7 bacteriophage-type single
           subunit RNA polymerase 1) (NsRpoT-A)
          Length = 1002

 Score =  516 bits (1330), Expect = e-146
 Identities = 277/492 (56%), Positives = 351/492 (71%), Gaps = 34/492 (6%)

Query: 20  SSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSNFSFSEHPFSFSSISLNHFR 79
           S  S +  H     E+  ++P    SQ  +F+S     + +F          S SL   R
Sbjct: 60  SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSV----KGDFRVCGKR---GSGSLGFLR 112

Query: 80  TYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSY---KY 136
           +YGS AAEAI ST  ED      + +Q+L+++M  E E     L+ K+          KY
Sbjct: 113 SYGS-AAEAIASTSEEDI-----DEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKY 166

Query: 137 KMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQ 196
            +LRRRQIK+ETEAWEEAA+EYQELL DM EQKLAPNLPYMKSLFLGWFEPL++AIAA+Q
Sbjct: 167 NLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ 226

Query: 197 EICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIE 256
           ++C + K R ++AP+F++LP +MMAVITMHKLMGLLMT   G GSARV+QAA  IGEAIE
Sbjct: 227 KLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGG-GTGSARVVQAASHIGEAIE 285

Query: 257 HEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIK 316
           HE RI+RF+EKTK   A S   D +  P  +              KE +R+R KV  L+K
Sbjct: 286 HEARIHRFLEKTKKSNALS--GDLEDTPGDIM-------------KERERVRKKVKILMK 330

Query: 317 KQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAF 376
           KQK QQ   IVK +D  KPWGQ+  VKVG RLIQ+L+ETAY++PP ++  D  PDI PAF
Sbjct: 331 KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAF 390

Query: 377 KHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAY 436
            HTLKT+  ++  GSRRYGVI+CDP+++KGL+KTAR+MVIPYMPMLVPP +W+GYDKGAY
Sbjct: 391 VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAY 448

Query: 437 LFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANG 496
           LFLPSY+MR HGAKQQR+A+K  PK QL+ +F+AL+TLGNTKWR+N+ VLG++D+IWA+G
Sbjct: 449 LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASG 508

Query: 497 GRVADLVDRDDV 508
           GR+ADLVDR+DV
Sbjct: 509 GRLADLVDREDV 520


>RPO2_NICSY (Q8VWF8) DNA-directed RNA polymerase 2,
           chloroplast/mitochondrial precursor (EC 2.7.7.6) (T7
           bacteriophage-type single subunit RNA polymerase 2)
           (NsRpoT-B)
          Length = 1020

 Score =  487 bits (1253), Expect = e-137
 Identities = 265/521 (50%), Positives = 356/521 (67%), Gaps = 32/521 (6%)

Query: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
           MW  + K+ SSR       SS +  +S      + I +      S + I  S   +G  N
Sbjct: 35  MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94

Query: 61  FS-------FSEHPFSFSSISLNHF--RTYGSVA-AEAIESTDTEDDCSGSEEVVQKLLD 110
                    F   P   + ++ N    ++Y SVA A A+ STD E+D S  +EV + L +
Sbjct: 95  LGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTE 154

Query: 111 QMVIEEEKKNPQLEEKKKNKNNS----YKYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
             + +EEKK      +K+    S     KY+ L+RRQ+K+ETEAWE+AA+EY+ELL DM 
Sbjct: 155 --LKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 212

Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
           EQKLAPNLPY+KSLFLGWFEPL++ IA +QE+C   K++ ++A YF +LP DMMAVITMH
Sbjct: 213 EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMH 272

Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
           KLMGLLMT  +  G+ARV+QAA  IG+AIE E RI+ F+EKTK +KA   K   D     
Sbjct: 273 KLMGLLMTGGDH-GTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED----- 326

Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
             GE++T        +E+++LR KV +L+KKQK +    IV+ +D +KPWGQ+A+ KVGS
Sbjct: 327 --GEHVT--------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGS 376

Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
           RLI LL++TAY++PPAN+     PDI PAF H+++T++ ++ + SRRYG+I+CD ++ KG
Sbjct: 377 RLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQCDELVFKG 436

Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
           LE+TAR+MVIPYMPMLVPP  W GYDKG +L+LPSYVMR HGA+QQR+A+K A +NQL  
Sbjct: 437 LERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQP 496

Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDD 507
           +FEAL+TLGNTKWR+NK VL V+D+IWA GGR+ADLVDRDD
Sbjct: 497 VFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDD 537


>RPOM_ARATH (P92969) DNA-directed RNA polymerase, mitochondrial
           precursor (EC 2.7.7.6)
          Length = 976

 Score =  476 bits (1225), Expect = e-134
 Identities = 252/522 (48%), Positives = 347/522 (66%), Gaps = 42/522 (8%)

Query: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
           MW  +  RAS R+    S SS+S       ++P   +R   S  +  G+        R+ 
Sbjct: 1   MWRNILGRASLRKVKFLSDSSSS-----GTHYPVNRVRGILSSVNLSGV--------RNG 47

Query: 61  FSFSEHPFSFSSISLNHFRTYG----SVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEE 116
            S +         S  H + Y     + AA+AI+STD ED+ SGS+EV     ++++ E 
Sbjct: 48  LSINPVNEMGGLSSFRHGQCYVFEGYATAAQAIDSTDPEDESSGSDEV-----NELITEM 102

Query: 117 EKKNPQLEEKKKNKN----------NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
           EK+  ++ +K +              + K+ ML++RQ+K+ETE WE AARE +E+L DM 
Sbjct: 103 EKETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMC 162

Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
           EQKLAPNLPYMKSLFLGWFEP++NAI  D +  K  K ++ +AP+  +LP D MAVITMH
Sbjct: 163 EQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMH 222

Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
           K+MGLLMTN+ GVG  +++ AA QIGEA+E E RI  F++K   K AT    ++++    
Sbjct: 223 KMMGLLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEA---- 278

Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
              EN++    E +AKE ++ R +V  L++K K +Q   +V+  D  KPWGQEAQVKVG+
Sbjct: 279 ---ENVS---EEIVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGA 332

Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
           RLIQLL+E AY++PPA +F DG PDI PAFK   +T++ ++   SRRYG IECDP++ KG
Sbjct: 333 RLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKG 392

Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
           L+K+AR+MVIPY+PML+PP NW GYD+GA+ FLPSYVMR HGAKQQR  +K  PK QL+ 
Sbjct: 393 LDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEP 452

Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
           ++EAL+TLGNTKW++NK VL ++D+IWANGGR+  LVDR+DV
Sbjct: 453 VYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDV 494


>RPO3_NICSY (Q8L4F8) DNA-directed RNA polymerase 3, chloroplast
           precursor (EC 2.7.7.6) (T7 bacteriophage-type single
           subunit RNA polymerase 3) (NsRpoT-C)
          Length = 977

 Score =  374 bits (959), Expect = e-103
 Identities = 184/375 (49%), Positives = 253/375 (67%), Gaps = 18/375 (4%)

Query: 135 KYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAA 194
           +Y MLRRRQIK ETEAWE+   EY+EL  +M E+KLAPNLPY+K L LGWFEPL+ AI  
Sbjct: 139 RYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEK 198

Query: 195 DQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEA 254
           +Q      K R + AP+ + LP D MAVI MHKLMGLLM         +V+QAA QIG A
Sbjct: 199 EQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMA 258

Query: 255 IEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASL 314
           +E+E RI+ F+EKTK  K   H +               A+  E +++E   LR +V SL
Sbjct: 259 VENEVRIHNFLEKTK--KLQKHMTG--------------AQSQEDMSRETMILRKRVKSL 302

Query: 315 IKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFP 374
           IK+ +  +   ++K  ++ + WG++ Q K+G RL++LL ETAY++PP ++  D  PDI P
Sbjct: 303 IKRNRVVEVRKLMKS-EEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRP 361

Query: 375 AFKHTLKTISNDSNNGS-RRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDK 433
           AF+H  +  + D      ++YGVIECDP++  G+++T + M+IPY+PMLVPP  W GYDK
Sbjct: 362 AFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDK 421

Query: 434 GAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIW 493
           G YLFLPSY+MR HG+++Q+DA++  P  Q+  ++EAL+TLG+TKWRVNK +L V++ IW
Sbjct: 422 GGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIW 481

Query: 494 ANGGRVADLVDRDDV 508
           A GG +A LVDR DV
Sbjct: 482 AGGGNIAGLVDRKDV 496


>RPOT_ARATH (O24600) DNA-directed RNA polymerase, chloroplast
           precursor (EC 2.7.7.6)
          Length = 993

 Score =  362 bits (929), Expect = 1e-99
 Identities = 190/407 (46%), Positives = 274/407 (66%), Gaps = 37/407 (9%)

Query: 105 VQKLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELLED 164
           + K++DQ +        ++E K  +K    K+  LRRRQ+K ETEAWE    EY++L ++
Sbjct: 139 LSKMVDQTL--------KIERKDIDKR---KFDSLRRRQVKEETEAWERMVDEYRDLEKE 187

Query: 165 MREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDT--KTRLSHAPYFNELPPDMMAV 222
           M E+ LAPNLPY+K +FLGWF+PLK+ I  +Q++ K+   K R ++AP+   LP D MAV
Sbjct: 188 MCEKNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAV 247

Query: 223 ITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDS 282
           I MHK+MGL+M+     G  +V+QAA  IG AIE E RI+ F+++T+             
Sbjct: 248 IVMHKMMGLVMSGHED-GCIQVVQAAVSIGIAIEQEVRIHNFLKRTR------------- 293

Query: 283 VPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQV 342
                  +N   +  E+L KE++ LR +V SLI++++   AL +VK  +  KPWG+  Q 
Sbjct: 294 -------KNNAGDSQEEL-KEKQLLRKRVNSLIRRKRIIDALKVVKS-EGTKPWGRATQA 344

Query: 343 KVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISN-DSNNGSRRYGVIECDP 401
           K+GSRL++LLIE AY++PP  + GD  P+  PAF+H  KT++    +   RRYGVIECD 
Sbjct: 345 KLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDS 404

Query: 402 MIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPK 461
           ++  GL+K+A++M+IPY+PMLVPP  W GYDKG YLFLPSY+MR HG+K+Q+DALK    
Sbjct: 405 LLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISH 464

Query: 462 NQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
                +FEAL+TLGNTKWRVN+++L V++++WA+GG +A LV+R+DV
Sbjct: 465 KTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLVNREDV 511


>RPOM_YEAST (P13433) DNA-directed RNA polymerase, mitochondrial
           precursor (EC 2.7.7.6)
          Length = 1351

 Score =  108 bits (269), Expect = 4e-23
 Identities = 110/409 (26%), Positives = 171/409 (40%), Gaps = 64/409 (15%)

Query: 121 PQLEEKKK-----NKNNSYKYKMLRRRQIKIETEAW----EEAAREYQELLEDMREQKL- 170
           P LEEKK      N  N  + K+L  R  +   E W    EEA       +E     KL 
Sbjct: 396 PTLEEKKAFESALNIFNQDRQKVLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLW 455

Query: 171 ---APNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHK 227
                 LP +K         L   ++  + + K    RL + PY   + P  M VIT   
Sbjct: 456 KWYNEMLPLVKEEINHCRSLLSEKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVIT--- 512

Query: 228 LMGLLMTNSNG--VGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPA 285
           ++ LL  NS G  +   R  +A   +G+AIE E R                   S+ V  
Sbjct: 513 ILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFR-------------------SEQV-- 551

Query: 286 PVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVG 345
            +K E+    +  K + E K+L     S+ +  + +Q+  +         W Q  + ++G
Sbjct: 552 -LKSESQAFRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL---------WPQSIRARIG 601

Query: 346 SRLIQLLIETAYLE----PPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDP 401
           S LI +LI+ A +      P  K    G    PAF H  +      +NGS+  GV++   
Sbjct: 602 SVLISMLIQVAKVSVQGVDPVTKAKVHGEA--PAFAHGYQY-----HNGSK-LGVLKIHK 653

Query: 402 MIQKGL--EKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWA 459
            + + L  E+   ++    +PMLV P  W+ +  G Y +  S ++R   + +Q   LK A
Sbjct: 654 TLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAA 713

Query: 460 PKN-QLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDD 507
             N  +D +++ LN LG T W VN+ V  V+ Q+W  G    D+    D
Sbjct: 714 SDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQD 762


>RPOM_SCHPO (O13993) DNA-directed RNA polymerase, mitochondrial
           precursor (EC 2.7.7.6)
          Length = 1120

 Score = 93.6 bits (231), Expect = 1e-18
 Identities = 97/397 (24%), Positives = 163/397 (40%), Gaps = 66/397 (16%)

Query: 132 NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNA 191
           N  + K+L +  I    E W+    E++ +L   R     P    + SLF  W+  L+  
Sbjct: 251 NLARQKLLEKSAILSAAEVWKS---EHESVLN--RGNLQVPK--NVSSLFYSWYVQLEQL 303

Query: 192 IAADQEICKDT---------KTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSA 242
              +  +  D            RL + P+   L    +A +T+ ++   L TN      A
Sbjct: 304 FKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIMEV-AQLSTNPRYDRGA 362

Query: 243 RVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAK 302
           RV      +G + E E                               E +  +E  K  K
Sbjct: 363 RVTTLLGGLGRSFERE----------------------------FLSEQIQRQEKNKSYK 394

Query: 303 EEKRLRNKVASLIKKQKKQQALGIVKGRDQ------AKPWGQEAQVKVGSRLIQLLIETA 356
           ++KRL+       K ++  + L +   RD          W     +KVGS  + LL+  A
Sbjct: 395 DKKRLKELFNDPRKFRQAVKNLRLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVA 454

Query: 357 YLEPPANKFGDGG--PDIFPAFKHTLKTISNDSNNGSRRYGVI----ECDPMIQKGLEKT 410
            +E  A     GG       AF HT +      +NG R+ G+I    E   ++ + +EK 
Sbjct: 455 KIEVTAKDLSTGGILKQEVAAFVHTYQY-----SNG-RKVGMIVPHVEFYKLLSRDIEKP 508

Query: 411 ARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKN-QLDSIFE 469
             +  +  +PMLV P  W  +  G Y +    ++R+ GA +Q D L  A +N QLD +F+
Sbjct: 509 HLHPQL--LPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFK 566

Query: 470 ALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRD 506
           A+++LG   WR+N+ +  V+ +IW +G +   +  R+
Sbjct: 567 AVSSLGKVSWRINQRLFNVLIRIWNSGEKFLSIPPRE 603


>RPOM_NEUCR (P38671) DNA-directed RNA polymerase, mitochondrial
           precursor (EC 2.7.7.6)
          Length = 1422

 Score = 93.2 bits (230), Expect = 1e-18
 Identities = 88/388 (22%), Positives = 167/388 (42%), Gaps = 49/388 (12%)

Query: 140 RRRQIKIETEAWEEAAREYQELLEDMREQKLAPNL--PYMKSLFLGWFEPLKNAIAA--- 194
           R  Q K+E +  + +   ++E  E +++  L  +L  P + S    W + L+  +     
Sbjct: 361 REIQSKLEKDCVDASLARWREENESLQKMGLNTSLDTPSLNSRLYQWQKDLETRLRTMLV 420

Query: 195 ---DQEIC----KDTKTRLSHAPYFNELPPDMMAVITM-HKLMGLLMTNSNGVGSARVIQ 246
                E+     KD   R  + P+  +  P+ +A +T+   L  L M +  G   A +I 
Sbjct: 421 EVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMRSHKGSTIASLIT 480

Query: 247 AACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKR 306
              +  E      +    + K  ++KA S + +  SV                      R
Sbjct: 481 HIAKFAEEDIRVQKAEALISKRNLRKAKSKQHNPRSV---------------------LR 519

Query: 307 LRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYL----EPPA 362
            +N  AS             V+  D+A  W    + KVG+ L+  L++TA +    E P 
Sbjct: 520 FKNSTASAGSSDMADSNNVAVEMDDEA--WTTTIRTKVGAALLSALLDTAKITLVREDPV 577

Query: 363 NKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPML 422
            K         PAF H ++        G +   +I    +++  + +   + +  ++PM+
Sbjct: 578 TKTLITQNQ--PAFSHVMQL-----RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMV 630

Query: 423 VPPNNWIGYDKGAYLFLPSYVMRI-HGAKQQRDALKWA-PKNQLDSIFEALNTLGNTKWR 480
            PP+ W+ ++KGAYL   + V+R+ +G ++QR   + A  +  +D +F+ L+ LG T W+
Sbjct: 631 TPPDPWVSFEKGAYLETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWK 690

Query: 481 VNKSVLGVIDQIWANGGRVADLVDRDDV 508
           +N  V  V+  +W +G +VA++   D +
Sbjct: 691 INSPVFKVMLDVWNSGKQVANIPPLDPI 718


>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial
           precursor (EC 2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 68.2 bits (165), Expect = 5e-11
 Identities = 47/168 (27%), Positives = 78/168 (45%), Gaps = 11/168 (6%)

Query: 334 KPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRR 393
           +PW    Q+++G  L ++L++   +    +K       + P   H        S    ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDK-PHRSSRLVPVLYHVY------SFRNVQQ 617

Query: 394 YGVIECDPMIQKGLEKTARNMVI---PYMPMLVPPNNWIGYDKGAYLFLPSYVMR-IHGA 449
            G+++  P   + LEK A   +      +PML PP  W     GA+L  P+ +MR + GA
Sbjct: 618 IGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGA 677

Query: 450 KQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGG 497
            Q ++ L+  P   L    +AL  LGN  WRVN  VL ++ Q++   G
Sbjct: 678 TQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKG 725


>RPOL_BPT3 (P07659) DNA-directed RNA polymerase (EC 2.7.7.6)
          Length = 884

 Score = 67.8 bits (164), Expect = 6e-11
 Identities = 91/378 (24%), Positives = 154/378 (40%), Gaps = 84/378 (22%)

Query: 139 LRRRQIKIETEAWEEAAREYQELLEDMREQK-------------LAPNLPYMKSLFLGWF 185
           L + Q+ +E E++E   R + ++LE  R+ K             LA  LP + +  + W 
Sbjct: 33  LAKEQLALEHESYELGERRFLKMLE--RQAKAGEIADNAAAKPLLATLLPKLTTRIVEWL 90

Query: 186 EPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVI 245
           E   +         K  +   ++AP    L P+  A IT+  ++  L T++N       I
Sbjct: 91  EEYAS---------KKGRKPSAYAP-LQLLKPEASAFITLKVILASL-TSTN----MTTI 135

Query: 246 QAAC-QIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEE 304
           QAA   +G+AIE E R  R  +                    ++ ++      E+L K  
Sbjct: 136 QAAAGMLGKAIEDEARFGRIRD--------------------LEAKHFKKHVEEQLNKRH 175

Query: 305 KRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIE-TAYLEPPAN 363
            ++  K A +   +      G++ G   +  W +E  + VG RLI++LIE T  +E   +
Sbjct: 176 GQVYKK-AFMQVVEADMIGRGLLGGEAWSS-WDKETTMHVGIRLIEMLIESTGLVELQRH 233

Query: 364 KFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIE-CDPMIQKGLEKTARNMVIPYMPML 422
             G+ G D        L+      +  ++R G +    PM Q               P +
Sbjct: 234 NAGNAGSD-----HEALQLAQEYVDVLAKRAGALAGISPMFQ---------------PCV 273

Query: 423 VPPNNWIGYDKGAYLF---LPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKW 479
           VPP  W+    G Y      P  ++R H  K     L       +  +++A+N   NT W
Sbjct: 274 VPPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNLAQNTAW 329

Query: 480 RVNKSVLGVIDQI--WAN 495
           ++NK VL V+++I  W N
Sbjct: 330 KINKKVLAVVNEIVNWKN 347


>RPOL_BPK11 (P18147) DNA-directed RNA polymerase (EC 2.7.7.6)
          Length = 906

 Score = 67.4 bits (163), Expect = 8e-11
 Identities = 89/392 (22%), Positives = 156/392 (39%), Gaps = 101/392 (25%)

Query: 141 RRQIKIETEAWEEAAREYQELLE-DMREQKLAPNL----------PYMKSLFLGWFE--- 186
           R Q+ +E EA+E   + + ++LE  ++  + A N           P +      W E   
Sbjct: 34  REQLALEHEAYELGRQRFLKMLERQVKAGEFADNAAAKPLVLTLHPQLTKRIDDWKEEQA 93

Query: 187 -----------PLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTN 235
                      P+K+ +A++  +    +         +E     +A++T+  ++G     
Sbjct: 94  NARGKKPRAYYPIKHGVASELAVSMGAEVLKEKRGVSSE----AIALLTIKVVLGNAHRP 149

Query: 236 SNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAE 295
             G   A     + Q+G+A+E E R  R  E+                 A    +N+  +
Sbjct: 150 LKGHNPA----VSSQLGKALEDEARFGRIREQ----------------EAAYFKKNVADQ 189

Query: 296 ENEKLAKEEKRLRNKV--ASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLI 353
            ++++    K+   +V  A +I K         + G D    W  + Q+ VG++L++LLI
Sbjct: 190 LDKRVGHVYKKAFMQVVEADMISKG--------MLGGDNWASWKTDEQMHVGTKLLELLI 241

Query: 354 E-TAYLEPPANKFGDGGPDI--------FPAFKHTLKTISNDSNNGSRRYGVIE-CDPMI 403
           E T  +E   NK  DG  D+         PAF   L          S+R G +    PM 
Sbjct: 242 EGTGLVEMTKNKMADGSDDVTSMQMVQLAPAFVELL----------SKRAGALAGISPM- 290

Query: 404 QKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFL---PSYVMRIHGAKQQRDALKWAP 460
                         + P +VPP  W+    G Y  +   P  ++R H  K    AL+   
Sbjct: 291 --------------HQPCVVPPKPWVETVGGGYWSVGRRPLALVRTHSKK----ALRRYA 332

Query: 461 KNQLDSIFEALNTLGNTKWRVNKSVLGVIDQI 492
              +  +++A+N   NT W+VNK VL V+++I
Sbjct: 333 DVHMPEVYKAVNLAQNTPWKVNKKVLAVVNEI 364


>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial
           precursor (EC 2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 51/180 (28%), Positives = 81/180 (44%), Gaps = 12/180 (6%)

Query: 322 QALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLK 381
           ++LG ++   Q +PW     +++G +L +LL++   + P +     G     P   H   
Sbjct: 525 ESLGPLEAPAQ-QPWSVPVLLQLGKQLAELLVQAVQM-PRSLAARQGAQRSIPVLYHVY- 581

Query: 382 TISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVI---PYMPMLVPPNNWIGYDKGAYLF 438
                S    R+ G+++  P     LE  A   +      +PML PP  W     GAYL 
Sbjct: 582 -----SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLL 636

Query: 439 LPSYVMRI-HGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGG 497
             + +MR   G  Q +  L+  P  QL    +AL  LGN  WRVN  +L ++ QI+ + G
Sbjct: 637 SSTKLMRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKG 696


>RPOL_BPT7 (P00573) DNA-directed RNA polymerase (EC 2.7.7.6)
          Length = 883

 Score = 65.1 bits (157), Expect = 4e-10
 Identities = 90/372 (24%), Positives = 144/372 (38%), Gaps = 80/372 (21%)

Query: 139 LRRRQIKIETEAWEEAAREYQELLE-DMREQKLAPN----------LPYMKSLFLGWFEP 187
           L R Q+ +E E++E     ++++ E  ++  ++A N          LP M +    WFE 
Sbjct: 32  LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91

Query: 188 LKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQA 247
           +K          K  K R +   +  E+ P+ +A IT+   +  L +  N    A     
Sbjct: 92  VK---------AKRGK-RPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQA----V 137

Query: 248 ACQIGEAIEHEGRIYRF--MEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEK 305
           A  IG AIE E R  R   +E    KK                  N+  + N+++    K
Sbjct: 138 ASAIGRAIEDEARFGRIRDLEAKHFKK------------------NVEEQLNKRVGHVYK 179

Query: 306 RLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIE-TAYLEPPANK 364
           +   +V       K     G++ G   +  W +E  + VG R I++LIE T  +      
Sbjct: 180 KAFMQVVEADMLSK-----GLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQN 233

Query: 365 FGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIE-CDPMIQKGLEKTARNMVIPYMPMLV 423
            G  G D       T++     +   + R G +    PM Q               P +V
Sbjct: 234 AGVVGQD-----SETIELAPEYAEAIATRAGALAGISPMFQ---------------PCVV 273

Query: 424 PPNNWIGYDKGAYLF---LPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWR 480
           PP  W G   G Y      P  ++R H  K    AL       +  +++A+N   NT W+
Sbjct: 274 PPKPWTGITGGGYWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWK 329

Query: 481 VNKSVLGVIDQI 492
           +NK VL V + I
Sbjct: 330 INKKVLAVANVI 341


>RPOL_BPSP6 (P06221) DNA-directed RNA polymerase (EC 2.7.7.6)
          Length = 874

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 75/362 (20%), Positives = 142/362 (38%), Gaps = 67/362 (18%)

Query: 143 QIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDT 202
           Q+++E E +    R ++   +         +  + + L      P+   I A +E  +  
Sbjct: 8   QLQLEEEMFNGGIRRFEADQQRQIAAGSESDTAWNRRLLSELIAPMAEGIQAYKEEYEGK 67

Query: 203 KTRLSHAPYFNE-LPPDMMAVITMHKLMGLLMTNSNGVGSARVIQA-ACQIGEAIEH--- 257
           K R   A  F + +  ++ A ITM  +M +L T++        +QA A  + E IE    
Sbjct: 68  KGRAPRALAFLQCVENEVAAYITMKVVMDMLNTDAT-------LQAIAMSVAERIEDQVR 120

Query: 258 ----EGRIYRFMEKTKVK-KATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVA 312
               EG   ++ EK K   KA+  KS   +    V  E   AE++               
Sbjct: 121 FSKLEGHAAKYFEKVKKSLKASRTKSYRHAHNVAVVAEKSVAEKDADF------------ 168

Query: 313 SLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDI 372
                             D+ + W +E Q+++G+ L+++L  + +               
Sbjct: 169 ------------------DRWEAWPKETQLQIGTTLLEILEGSVFYNGE----------- 199

Query: 373 FPAFKHTLKTISNDSNNGSRRYGVIECDPMIQ--KGLEKTARNMVIPYMPMLVPPNNWIG 430
            P F   ++T       G   Y +   + + Q     ++    +   Y P ++PP  W  
Sbjct: 200 -PVFMRAMRTYG-----GKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRT 253

Query: 431 YDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVID 490
              G +        RI   K  R+ ++   + Q+  +++A+N L NT+W++NK VL VI+
Sbjct: 254 PFNGGF-HTEKVASRIRLVKGNREHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIE 312

Query: 491 QI 492
           ++
Sbjct: 313 EV 314


>U2R1_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary
           factor 35 kDa subunit related-protein 1 (U2(RNU2) small
           nuclear RNA auxillary factor 1-like 1) (SP2)
          Length = 428

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 28/88 (31%), Positives = 49/88 (54%), Gaps = 9/88 (10%)

Query: 93  DTEDDCSGSEEVVQKLLD--------QMVIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQI 144
           + +DD S +EE+ ++LL+        + ++ EEK   +   KKK +  + K K  + RQI
Sbjct: 44  EEDDDVSANEELAERLLEIERQRLHEEWLLREEKAQEEFRIKKKKEEAARKQKEEQERQI 103

Query: 145 KIETEAWEEAAREYQE-LLEDMREQKLA 171
           K E E  ++  RE +E  L++ RE++ A
Sbjct: 104 KAEWEEQQKKQREEEEQKLQEKREREEA 131


>BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B
           antigen)
          Length = 1164

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 45/174 (25%), Positives = 74/174 (41%), Gaps = 15/174 (8%)

Query: 51  TSEYKLGRSNFSFSEHPFSFSSISLNHFRTYGSVAAE----AIESTDTEDDCSGSEEVVQ 106
           ++ YK    N   +E   +  ++ LN  +T    A +     +E T T       E+ V 
Sbjct: 485 STNYKTNTDNHKIAE--ITIKNLKLNESQTVTLKAKDDSGNVVEKTFTITVQKKEEKQVP 542

Query: 107 KLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
           K  +Q   + E+K PQ  E K N  N  +  +   +Q   E E  E+A +E  E      
Sbjct: 543 KTPEQKDSKTEEKVPQ--EPKSNDKNQLQELIKSAQQ---ELEKLEKAIKELME----QP 593

Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMM 220
           E    P     KS++    EP++ AI + ++I  D+ ++     YFN+   D M
Sbjct: 594 EIPSNPEYGIQKSIWESQKEPIQEAITSFKKIIGDSSSKYYTEHYFNKYKSDFM 647


>U2R2_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary
           factor 35 kDa subunit related-protein 2 (U2(RNU2) small
           nuclear RNA auxillary factor 1-like 2)
          Length = 462

 Score = 40.4 bits (93), Expect = 0.011
 Identities = 23/68 (33%), Positives = 37/68 (53%), Gaps = 3/68 (4%)

Query: 102 EEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQEL 161
           EE  Q+L ++ ++ EEK   +   KKK +  + K K    R++K E   WEE  R+ +E 
Sbjct: 69  EEERQRLHEEWLLREEKAQEEFRAKKKKEEEARKRKEELERKLKAE---WEEQQRKEREE 125

Query: 162 LEDMREQK 169
            E  R++K
Sbjct: 126 EEQKRQEK 133


>MOES_MOUSE (P26041) Moesin (Membrane-organizing extension spike
           protein)
          Length = 576

 Score = 38.1 bits (87), Expect = 0.055
 Identities = 58/266 (21%), Positives = 110/266 (40%), Gaps = 24/266 (9%)

Query: 102 EEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRR-RQIKIET-EAWEEAAREYQ 159
           EE  QK +++ ++E EKK  +L EK+K K    K +++ + +QI+ +T +A +E   + +
Sbjct: 310 EEKHQKQMERALLENEKKKRELAEKEKEKIEREKEELMEKLKQIEEQTKKAQQELEEQTR 369

Query: 160 ELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNEL---- 215
             LE  +E+K A +     +      E  K A+       K T+ +L  A    EL    
Sbjct: 370 RALELEQERKRAQSEAEKLAKERQEAEEAKEALLQASRDQKKTQEQL--ASEMAELTARI 427

Query: 216 --------PPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEK 267
                     +  AV    K   +           +   +   + E  E+E   +   ++
Sbjct: 428 SQLEMARKKKESEAVEWQQKAQMVQEDLEKTRAELKTAMSTPHVAEPAENE---HDEQDE 484

Query: 268 TKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQ-----Q 322
              + +   ++D+ +     +     AE+NE++ K  K L +++A+   + KK       
Sbjct: 485 NGAEASAELRADAMAKDRSEEERTTEAEKNERVQKHLKALTSELANARDESKKTANDMIH 544

Query: 323 ALGIVKGRDQAKPWGQEAQVKVGSRL 348
           A  +  GRD+ K   Q  Q     R+
Sbjct: 545 AENMRLGRDKYKTLRQIRQGNTKQRI 570


>MOES_HUMAN (P26038) Moesin (Membrane-organizing extension spike
           protein)
          Length = 576

 Score = 37.7 bits (86), Expect = 0.072
 Identities = 24/72 (33%), Positives = 44/72 (60%), Gaps = 2/72 (2%)

Query: 102 EEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRR-RQIKIET-EAWEEAAREYQ 159
           EE  QK +++ ++E EKK  ++ EK+K K    K +++ R +QI+ +T +A +E   + +
Sbjct: 310 EEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEELMERLKQIEEQTKKAQQELEEQTR 369

Query: 160 ELLEDMREQKLA 171
             LE  +E+K A
Sbjct: 370 RALELEQERKRA 381


>MOES_RAT (O35763) Moesin (Membrane-organizing extension spike
           protein)
          Length = 576

 Score = 37.4 bits (85), Expect = 0.094
 Identities = 24/72 (33%), Positives = 44/72 (60%), Gaps = 2/72 (2%)

Query: 102 EEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRR-RQIKIET-EAWEEAAREYQ 159
           EE  QK +++ ++E EKK  +L EK+K K    K +++ + +QI+ +T +A +E   + +
Sbjct: 310 EEKHQKQMERALLENEKKKRELAEKEKEKIEREKEELMEKLKQIEEQTKKAQQELEEQTR 369

Query: 160 ELLEDMREQKLA 171
             LE  +E+K A
Sbjct: 370 RALELEQERKRA 381


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,277,532
Number of Sequences: 164201
Number of extensions: 2596730
Number of successful extensions: 11439
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 10943
Number of HSP's gapped (non-prelim): 493
length of query: 515
length of database: 59,974,054
effective HSP length: 115
effective length of query: 400
effective length of database: 41,090,939
effective search space: 16436375600
effective search space used: 16436375600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)