BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144656.13 + phase: 0 /pseudo/partial
(1235 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 112 6e-24
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 102 8e-21
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 97 4e-19
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 96 6e-19
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 92 9e-18
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 89 1e-16
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 89 1e-16
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 88 1e-16
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 86 5e-16
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 86 5e-16
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 81 2e-14
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 80 4e-14
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 79 8e-14
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 78 2e-13
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 77 4e-13
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 76 6e-13
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 74 2e-12
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 72 7e-12
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 70 3e-11
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 70 4e-11
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 112 bits (280), Expect = 6e-24
Identities = 66/220 (30%), Positives = 119/220 (54%), Gaps = 3/220 (1%)
Query: 1016 KKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNE 1075
+KI ++ ++ D+FA S +++ E I K P+RQK R + +I+
Sbjct: 904 RKIWDVIEQFQDVFAISDDELGRNSG--TECVIELKEGAEPIRQKPRPIPLALKPEIRKM 961
Query: 1076 VQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVD 1135
+QK ++ + + P W + +V V KKDG +RMC+D+R +NK + PL +I+ +
Sbjct: 962 IQKMLNQKVIRESKSP-WSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQ 1020
Query: 1136 NNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMT 1195
+ A K++ D +G+ QI + + +E T+F F + V+P GL+ + A +Q M
Sbjct: 1021 SLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTME 1080
Query: 1196 TLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 1235
+ D++ VYVDD+++ SKD EQH++ + + R+R
Sbjct: 1081 EIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIR 1120
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 102 bits (253), Expect = 8e-21
Identities = 70/227 (30%), Positives = 121/227 (52%), Gaps = 14/227 (6%)
Query: 1015 KKKIIQLLREYPDIFAWSYEDMPGLD-PKIVEHRIPTKPECPPVRQKLRRTHPDM-ALKI 1072
K+++ LL++Y DI Y + L +H I TK P + ++P ++
Sbjct: 170 KQRLCALLQKYHDI---QYHEGDKLTFTNQTKHTINTKHNLPLYS---KYSYPQAYEQEV 223
Query: 1073 KNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDG-----KVRMCVDFRDLNKASPKDNFPL 1127
++++Q ++ G + T P + + I VPKK K R+ +D+R LN+ + D P+
Sbjct: 224 ESQIQDMLNQGIIRTSNSP-YNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282
Query: 1128 LHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAG 1187
++D ++ + F +D G++QI+M PE KT+F T G + Y MP GL NA
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342
Query: 1188 ATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERL 1234
AT+QR M + +++K VY+DD+IV S ++H++ L +FE+L
Sbjct: 343 ATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKL 389
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 96.7 bits (239), Expect = 4e-19
Identities = 57/197 (28%), Positives = 104/197 (51%), Gaps = 9/197 (4%)
Query: 1044 VEHRIPTKPECPPVRQK--LRRTHPDMALKIKNEVQKQIDAGFLMT----VEYPEWVANI 1097
++H + T P ++ L +TH ++++N+VQ+ ++ G + P WV
Sbjct: 195 IKHVLNTTHNSPIYSKQYPLAQTHE---IEVENQVQEMLNQGLIRESNSPYNSPTWVVPK 251
Query: 1098 VPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKM 1157
P K R+ +D+R LN+ + D +P+ ++D ++ + + F +D G++QI+M
Sbjct: 252 KPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEM 311
Query: 1158 SPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKS 1217
E KT+F T G + Y MP GL NA AT+QR M + +++K VY+DD+I+ S
Sbjct: 312 DEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFS 371
Query: 1218 KDEEQHVEYLTKMFERL 1234
+H+ + +F +L
Sbjct: 372 TSLTEHLNSIQLVFTKL 388
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 95.9 bits (237), Expect = 6e-19
Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 10/230 (4%)
Query: 1012 EWVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALK 1071
E K ++ + EY DIFA E P + + ++ K + P + R H + +
Sbjct: 273 ELFKSQLENICSEYIDIFA--LESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE-E 329
Query: 1072 IKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDG------KVRMCVDFRDLNKASPKDNF 1125
I+ +VQK I ++ ++ + ++ VPKK K R+ +D+R +NK D F
Sbjct: 330 IQAQVQKLIKDK-IVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKF 388
Query: 1126 PLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLIN 1185
PL ID ++D ++K F +D SG++QI++ R+ TSF T G++ + +P GL
Sbjct: 389 PLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKI 448
Query: 1186 AGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 1235
A ++QR MT F + + +Y+DD+IV E+ ++ LT++F + R
Sbjct: 449 APNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCR 498
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 92.0 bits (227), Expect = 9e-18
Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 1072 IKNEVQKQIDAGFLMT----VEYPEWVANIVPVPKK------DGKVRMCVDFRDLNKASP 1121
+ NEV++ + G + P WV V KK + R+ +DFR LN+ +
Sbjct: 197 VNNEVKQLLKDGIIRPSRSPYNSPTWV-----VDKKGTDAFGNPNKRLVIDFRKLNEKTI 251
Query: 1122 KDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPI 1181
D +P+ I +++ N ++K F +D SGY+QI ++ DREKTSF G + + +P
Sbjct: 252 PDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPF 311
Query: 1182 GLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERL 1234
GL NA + +QR + + + I K VYVDD+I+ S++E HV ++ + + L
Sbjct: 312 GLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCL 364
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 88.6 bits (218), Expect = 1e-16
Identities = 47/136 (34%), Positives = 78/136 (56%)
Query: 1100 VPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSP 1159
VPKK+G +RM VD++ LNK + +PL I+ L+ S +F +D S Y+ I++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 1160 EDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKD 1219
D K +F P G F Y VMP G+ A A +Q + T+ + V Y+DD+++ SK
Sbjct: 515 GDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKS 574
Query: 1220 EEQHVEYLTKMFERLR 1235
E +HV+++ + ++L+
Sbjct: 575 ESEHVKHVKDVLQKLK 590
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 88.6 bits (218), Expect = 1e-16
Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 15/211 (7%)
Query: 1021 LLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQI 1080
LL E+P IF P L VE + + +++P + ++ EV++QI
Sbjct: 91 LLGEFPRIFE------PPLSGMSVETAVKAEIRTNTQDPIYAKSYP-YPVNMRGEVERQI 143
Query: 1081 DA----GFLMTVEYPE----WVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDV 1132
D G + P W+ P P + + RM VDF+ LN + D +P+ I+
Sbjct: 144 DELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINA 203
Query: 1133 LVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQR 1192
+ + +K F +D SG++QI M D KT+F T G + + +P GL NA A +QR
Sbjct: 204 TLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQR 263
Query: 1193 GMTTLFHDMIHKEVEVYVDDMIVKSKDEEQH 1223
+ + + I K VY+DD+IV S+D + H
Sbjct: 264 MIDDILREHIGKVCYVYIDDIIVFSEDYDTH 294
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 88.2 bits (217), Expect = 1e-16
Identities = 45/124 (36%), Positives = 77/124 (61%), Gaps = 3/124 (2%)
Query: 1107 VRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTS 1166
+RMC+D+R L K + K+ +P+ +D L D AQ+ F +D SGY Q++++ D KT+
Sbjct: 6 LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65
Query: 1167 FITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV---KSKDEEQH 1223
+T +G+F ++VMP GL NA AT+ M + ++ + V VY+DD++V S +H
Sbjct: 66 CVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEH 125
Query: 1224 VEYL 1227
+++L
Sbjct: 126 IKHL 129
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 86.3 bits (212), Expect = 5e-16
Identities = 46/136 (33%), Positives = 79/136 (57%)
Query: 1100 VPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSP 1159
VPKK+G +RM VD++ LNK + +PL I+ L+ S +F +D S Y+ I++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 1160 EDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKD 1219
D K +F P G F Y VMP G+ A A +Q + T+ ++ V Y+D++++ SK
Sbjct: 515 GDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKS 574
Query: 1220 EEQHVEYLTKMFERLR 1235
E +HV+++ + ++L+
Sbjct: 575 ESEHVKHVKDVLQKLK 590
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 86.3 bits (212), Expect = 5e-16
Identities = 46/136 (33%), Positives = 79/136 (57%)
Query: 1100 VPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSP 1159
VPKK+G +RM VD++ LNK + +PL I+ L+ S +F +D S Y+ I++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 1160 EDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKD 1219
D K +F P G F Y VMP G+ A A +Q + T+ ++ V Y+D++++ SK
Sbjct: 515 GDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKS 574
Query: 1220 EEQHVEYLTKMFERLR 1235
E +HV+++ + ++L+
Sbjct: 575 ESEHVKHVKDVLQKLK 590
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 80.9 bits (198), Expect = 2e-14
Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 37/307 (12%)
Query: 949 FPPNFEFPMYEAEAEEGDDIPYEITRLLEQEKKAIQPHQEEIEFINIGTEENKREIKVGA 1008
F N +P++ A+ + E LE KK + Q E +NI T + + +K A
Sbjct: 134 FTKNKSYPVHIAKLTRAVRVGTE--GFLESMKKRSKTQQPEP--VNISTNKIENPLKEIA 189
Query: 1009 ALEEWVK---KKII---QLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLR 1062
L E + +K+ Q +++ ++ + P LDP + + + ++
Sbjct: 190 ILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENP-LDPNKTKQWM---------KASIK 239
Query: 1063 RTHPDMALKIK---------NEVQKQIDAGFLMTVEYPEWVANIVPV-------PKKDGK 1106
+ P A+K+K E KQI + V P ++ P K+ GK
Sbjct: 240 LSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGK 299
Query: 1107 VRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTS 1166
RM V+++ +NKA+ D + L + D L+ K+F D SG+ Q+ + E R T+
Sbjct: 300 KRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTA 359
Query: 1167 FITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEY 1226
F P G + + V+P GL A + +QR M F + K VYVDD++V S +EE H+ +
Sbjct: 360 FTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLH 418
Query: 1227 LTKMFER 1233
+ + ++
Sbjct: 419 VAMILQK 425
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 79.7 bits (195), Expect = 4e-14
Identities = 79/305 (25%), Positives = 133/305 (42%), Gaps = 33/305 (10%)
Query: 949 FPPNFEFPMYEAEAEEGDDIPYEITRLLEQEKKAIQPHQEEIEFINIGTEENKRE----I 1004
F N +P++ A+ + E LE KK + Q E I+ EN E +
Sbjct: 134 FTKNKSYPVHIAKLTRAVRVGTE--GFLESMKKRSKTQQPEPVNISTNKIENPLEEIAIL 191
Query: 1005 KVGAALEEWVKKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRT 1064
G L E Q +++ ++ + P LDP + + + ++ +
Sbjct: 192 SEGRRLSEEKLFITQQRMQKIEELLEKVCSENP-LDPNKTKQWM---------KASIKLS 241
Query: 1065 HPDMALKIK---------NEVQKQIDAGFLMTVEYPEWVANIVPV-------PKKDGKVR 1108
P A+K+K E KQI + V P ++ P K+ GK R
Sbjct: 242 DPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR 301
Query: 1109 MCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFI 1168
M V+++ +NKA+ D + L + D L+ K+F D SG+ Q+ + E R T+F
Sbjct: 302 MVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFT 361
Query: 1169 TPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLT 1228
P G + + V+P GL A + +QR M F + K VYVDD++V S +EE H+ ++
Sbjct: 362 CPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVA 420
Query: 1229 KMFER 1233
+ ++
Sbjct: 421 MILQK 425
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 79.0 bits (193), Expect = 8e-14
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 17/193 (8%)
Query: 1057 VRQKLRRTHPDMALKIK---------NEVQKQIDAGFLMTVEYPEWVANIVPV------- 1100
++ ++ + P A+K+K E KQI + V P ++ P
Sbjct: 234 MKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA 293
Query: 1101 PKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPE 1160
K+ GK RM V+++ +NKA+ D + L + D L+ K+F D SG+ Q+ + E
Sbjct: 294 EKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 353
Query: 1161 DREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDE 1220
R T+F P G + + V+P GL A + +QR M F + K VYVDD++V S +E
Sbjct: 354 SRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNE 412
Query: 1221 EQHVEYLTKMFER 1233
E H+ ++ + ++
Sbjct: 413 EDHLLHVAMILQK 425
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 77.8 bits (190), Expect = 2e-13
Identities = 61/220 (27%), Positives = 108/220 (48%), Gaps = 11/220 (5%)
Query: 1019 IQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQK 1078
+ L ++P++F +D GL K + T+ PV ++ R ++ E+ +
Sbjct: 408 VMLKNDFPEVF----KDGLGLCTK-EKAEFRTEENAVPVFKRARPVPYGSLEAVETELNR 462
Query: 1079 QIDAGFLMTVEYPEWVANIVPVPKKD-GKVRMCVDFR--DLNKASPKDNFPLLHIDVLVD 1135
+ G ++ + Y +W A IV + KK GK+R+C DF+ LN A+ KD F L +
Sbjct: 463 LQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFKCSGLN-AALKDEFHPLPTSEDIF 521
Query: 1136 NNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMT 1195
+ + V+ +D Y Q+++ E ++ T G F Y M GL A A++Q+ M
Sbjct: 522 SRLKGTVYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMD 581
Query: 1196 TLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLR 1235
+ + V VY DD+I+ + E+H + L ++FER +
Sbjct: 582 KMVSGLTG--VAVYWDDIIISASSIEEHEKILRELFERFK 619
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 76.6 bits (187), Expect = 4e-13
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 17/193 (8%)
Query: 1057 VRQKLRRTHPDMALKIK---------NEVQKQIDAGFLMTVEYPEWVANIVPV------- 1100
++ ++ + P A+K+K E KQI + V P ++ P
Sbjct: 229 MKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA 288
Query: 1101 PKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPE 1160
K+ GK RM V+++ +NKA+ D + + D L+ K+F D SG+ Q+ + E
Sbjct: 289 EKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 348
Query: 1161 DREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDE 1220
R T+F P G + + V+P GL A + +QR M F + K VYVDD++V S +E
Sbjct: 349 SRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNE 407
Query: 1221 EQHVEYLTKMFER 1233
E H+ ++ + ++
Sbjct: 408 EDHLLHVAMILQK 420
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 75.9 bits (185), Expect = 6e-13
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 1102 KKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPED 1161
+K GK RM +++ LN+ + D + L I+ ++ +SK++ D SG+ Q+ M E
Sbjct: 1458 EKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEES 1517
Query: 1162 REKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEE 1221
T+F+ + + VMP GL NA A +QR M +F K + VY+DD++V S+ E
Sbjct: 1518 VPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAE 1576
Query: 1222 QHVEYLTKMFE 1232
QH ++L M +
Sbjct: 1577 QHSQHLYTMLQ 1587
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 74.3 bits (181), Expect = 2e-12
Identities = 54/193 (27%), Positives = 92/193 (46%), Gaps = 17/193 (8%)
Query: 1057 VRQKLRRTHPDMALKIK---------NEVQKQIDAGFLMTVEYPEWVANIVPV------- 1100
++ ++ + P A+K+K E KQI + V P ++ P
Sbjct: 235 MKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA 294
Query: 1101 PKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIKMSPE 1160
G RM V+++ +NKA+ D + L + D L+ K+F D SG+ Q+ + E
Sbjct: 295 ENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 354
Query: 1161 DREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDE 1220
R T+F P G + + V+P GL A + +QR M F + K VYVDD++V S +E
Sbjct: 355 SRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDIVVFSNNE 413
Query: 1221 EQHVEYLTKMFER 1233
E H+ ++ + ++
Sbjct: 414 EDHLLHVAMILQK 426
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 72.4 bits (176), Expect = 7e-12
Identities = 57/220 (25%), Positives = 100/220 (44%), Gaps = 6/220 (2%)
Query: 1015 KKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKN 1074
K+K+ L +Y + W + + +I H I T P QK +P I+
Sbjct: 138 KEKLQSLFLKYDAL--WQHWENQVGHRRIKPHHIATGT-VNPRPQKQYPINPKAKASIQT 194
Query: 1075 EVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLV 1134
+ + G L+ + + PVPK DGK RM +D+R++NK P H ++
Sbjct: 195 VINDLLKQGVLIQ-QNSIMNTPVYPVPKPDGKWRMVLDYREVNKTIPLIAAQNQHSAGIL 253
Query: 1135 DNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGM 1194
+ + K +D +G+ ++PE T+F +C+ +P G +N+ A + +
Sbjct: 254 SSIFRGKYKTTLDLSNGFWAHSITPESYWLTAFTWLGQQYCWTRLPQGFLNSPALFTADV 313
Query: 1195 TTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERL 1234
L ++ V+VYVDD+ + D +H+E L K+F L
Sbjct: 314 VDLLKEV--PNVQVYVDDIYISHDDPREHLEQLEKVFSLL 351
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 70.5 bits (171), Expect = 3e-11
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 13/224 (5%)
Query: 1015 KKKIIQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPECPPVRQKLRRTHPDMALKIKN 1074
+K+++Q L D +E+ G +I H I T P QK +P I+
Sbjct: 135 QKELLQKLFLKYDALWQHWENQVG-HRRIKPHNIATGTLAPRP-QKQYPINPKAKPSIQI 192
Query: 1075 EVQKQIDAGFLM----TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHI 1130
+ + G L+ T+ P + PVPK DGK RM +D+R++NK P H
Sbjct: 193 VIDDLLKQGVLIQQNSTMNTP-----VYPVPKPDGKWRMVLDYREVNKTIPLIAAQNQHS 247
Query: 1131 DVLVDNNAQSKVFFFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPIGLINAGATY 1190
++ + + K +D +G+ ++PE T+F +C+ +P G +N+ A +
Sbjct: 248 AGILSSIYRGKYKTTLDLTNGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALF 307
Query: 1191 QRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERL 1234
+ L ++ V+ YVDD+ + D ++H+E L K+F L
Sbjct: 308 TADVVDLLKEI--PNVQAYVDDIYISHDDPQEHLEQLEKIFSIL 349
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 70.1 bits (170), Expect = 4e-11
Identities = 40/138 (28%), Positives = 72/138 (51%), Gaps = 2/138 (1%)
Query: 1097 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLLHIDVLVDNNAQSKVFFFMDGFSGYNQIK 1156
+ PVPK DG+ RM +D+R++NK P H ++ + K +D +G+
Sbjct: 5 VYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHP 64
Query: 1157 MSPEDREKTSFITPWGTFCYKVMPIGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 1216
++PE T+F +C+ +P G +N+ A + + L ++ V+VYVDD+ +
Sbjct: 65 ITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEI--PNVQVYVDDIYLS 122
Query: 1217 SKDEEQHVEYLTKMFERL 1234
D ++HV+ L K+F+ L
Sbjct: 123 HDDPKEHVQQLEKVFQIL 140
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,370,939
Number of Sequences: 164201
Number of extensions: 6845171
Number of successful extensions: 24675
Number of sequences better than 10.0: 193
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 23433
Number of HSP's gapped (non-prelim): 705
length of query: 1235
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1113
effective length of database: 39,941,532
effective search space: 44454925116
effective search space used: 44454925116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)
Medicago: description of AC144656.13