BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144618.9 + phase: 0 
         (313 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DPOE_SCHPO (P87154) DNA polymerase epsilon, catalytic subunit A ...    37  0.063
YB13_YEAST (P38289) Hypothetical 67.6 kDa protein in CDC28-ARL1 ...    32  2.0
TR23_YEAST (Q03784) Transport protein particle 23 kDa subunit (T...    31  4.5
SLPH_BRECH (P38538) Surface layer protein precursor (Hexagonal w...    30  7.8
RPOC_MYCPU (Q98Q24) DNA-directed RNA polymerase beta' chain (EC ...    30  7.8
DCR1_SCHPO (Q09884) Cell cycle control protein dcr1 (RNA interfe...    30  7.8

>DPOE_SCHPO (P87154) DNA polymerase epsilon, catalytic subunit A (EC
           2.7.7.7) (DNA polymerase II subunit A)
          Length = 2199

 Score = 37.0 bits (84), Expect = 0.063
 Identities = 32/141 (22%), Positives = 57/141 (39%), Gaps = 17/141 (12%)

Query: 42  LYQTSIGGQWRNISVLWCKNLINHTLNLKVDSARGEQFHQNCKIEV-KPWC----FWNRK 96
           +Y   +   + NI +         T  L+ DS + E F   C + V    C     W  +
Sbjct: 622 IYHLDVASMYPNIMI---------TNRLQPDSVKDESFCATCDLNVPNKTCDRRMVWAWR 672

Query: 97  GYRSFDVDGNQIDVYWDLRSAKFAGNCP-EPCSDYYVMLVSDEEVVLL--LGDYKKKAYK 153
           G       G    +Y  L+S +F G  P  P   +  +  S++  ++   + DY +K Y 
Sbjct: 673 GEYYPAKKGEYHMIYSALQSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIADYSRKVYH 732

Query: 154 RMKMRQALVEATLLVKRENVF 174
           R+     +   T++ ++EN F
Sbjct: 733 RLYDNTVIERETIICQKENSF 753


>YB13_YEAST (P38289) Hypothetical 67.6 kDa protein in CDC28-ARL1
           intergenic region
          Length = 585

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 33  KTAQSTVTCLYQTSIGGQWRNISVLWCKNLINHTLNLKVDSARGEQFHQNCKIEVKP 89
           K  + +VT L  T    + RN    + +NL N  LNLK    +G++ H++ + E  P
Sbjct: 125 KKKRLSVTQLCTTQNWCELRNFYDFYSQNLSNQLLNLKFQVQKGKKIHKSLEDETHP 181


>TR23_YEAST (Q03784) Transport protein particle 23 kDa subunit
           (TRAPP 23 kDa subunit)
          Length = 219

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 6/55 (10%)

Query: 65  HTLNLKVDSARGEQFHQNCKIEVKPWCFWNRKGYRSFDVDGNQIDVYWDLRSAKF 119
           HT N K+ S +G+ F +      +P+  WN+ G R    D   + +Y  L   KF
Sbjct: 92  HTNNEKLGSFKGDDFFK------EPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKF 140


>SLPH_BRECH (P38538) Surface layer protein precursor (Hexagonal wall
           protein) (HWP)
          Length = 1116

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 197 ESSTAGNKDPEMWISIDGIVLIHI-----KNLQWKFRGNQTVMVNKQPVHVFWDVYDWLF 251
           +S+T   +D      ID +V+  +       +   +   +T     +    F DVYD L 
Sbjct: 882 KSATLMPEDERQKAGIDKLVVARVDEVDGNTISLNYADGKTQKYYTKASTAFIDVYDGLE 941

Query: 252 SVSGSGPGLFIFKPGPTEVESDKEEKGLEGESDDGSATSGYYSTKSYTPF 301
            + G   G +I      +++  + +  L   SDD   T  + STK+ T F
Sbjct: 942 GIDGVDEGDYIVMIDSADIDGTRFDYVLVVSSDDEIRTQ-HISTKAVTDF 990


>RPOC_MYCPU (Q98Q24) DNA-directed RNA polymerase beta' chain (EC
           2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
           chain) (RNA polymerase beta' subunit)
          Length = 1426

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 30/132 (22%), Positives = 52/132 (38%), Gaps = 23/132 (17%)

Query: 129 DYYVMLVSDEEVVLLLGDYKKKAYKRMKMRQALVEATLLVKRENVFAK--KSFSTKAKFD 186
           D YV +++ E+V  ++ D     YK    + A +  T     E + A+    F+TK   D
Sbjct: 715 DKYVPVLTKEDVASVINDVNHTNYKDTSTKFANLVTTNKTALEYIHAESLSKFTTKHFVD 774

Query: 187 EKRKESDIVVESSTAGNKDPEMW----------------ISIDGIVLIHIKNLQWKFRGN 230
             +K     +   T GN +  +W                ++I   VL  IK+L +KF   
Sbjct: 775 VNKK-----LSLKTPGNPNQPIWEVDQYVELLENVWFDYVNIVASVLDEIKDLGFKFSTK 829

Query: 231 QTVMVNKQPVHV 242
               ++   + V
Sbjct: 830 SGTSISIHDIEV 841


>DCR1_SCHPO (Q09884) Cell cycle control protein dcr1 (RNA
           interference pathway protein dcr1)
          Length = 1374

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 24/95 (25%), Positives = 40/95 (41%), Gaps = 3/95 (3%)

Query: 19  SLMSQRITEEPLPTKTAQSTVTCLYQTSIGGQWRNISVLWCKNLINHTLNLKVDSARGEQ 78
           SL   R    P   +     +  LY   +    +N S L   +++ H  NL V S+  E 
Sbjct: 846 SLWGNRAKSIPKSQQVRSFYINDLYILPVSRHLKN-SALLIPSILYHIENLLVASSFIEH 904

Query: 79  FHQNCKIEVKPWCFWNRKGYRSFDVDGNQIDVYWD 113
           F  +CKI+       + +   +FD D  +++ Y D
Sbjct: 905 FRLDCKIDTACQALTSAESQLNFDYD--RLEFYGD 937


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.317    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,134,905
Number of Sequences: 164201
Number of extensions: 1579864
Number of successful extensions: 3660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3658
Number of HSP's gapped (non-prelim): 7
length of query: 313
length of database: 59,974,054
effective HSP length: 110
effective length of query: 203
effective length of database: 41,911,944
effective search space: 8508124632
effective search space used: 8508124632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)