BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144618.8 + phase: 0 /pseudo
(558 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATPA_MYCGE (P47641) ATP synthase alpha chain (EC 3.6.3.14) 32 3.3
YHK8_YEAST (P38776) Hypothetical transport protein YHR048W 32 4.4
YOBJ_BACSU (O34774) Hypothetical protein yobJ 31 7.4
M172_HUMAN (Q14596) Membrane component, chromosome 17, surface m... 31 7.4
YNJC_ECOLI (P76224) Hypothetical ABC transporter permease protei... 31 9.7
RB24_MOUSE (P35290) Ras-related protein Rab-24 (Rab-16) 31 9.7
OR13_MOUSE (Q8VFK8) Putative olfactory receptor 201-1 31 9.7
>ATPA_MYCGE (P47641) ATP synthase alpha chain (EC 3.6.3.14)
Length = 518
Score = 32.3 bits (72), Expect = 3.3
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 19/165 (11%)
Query: 339 NRRDSSQNSKHTLQQSRSMKWKIQQYKPVQVWDWFFKSCEVNGRIVLRDGLISVKEIEEC 398
+R S+ +K QQ+ S+K ++ QY + + F + N + VL G K + E
Sbjct: 364 SRVGSAAQTKAIKQQTGSLKLELAQYSELDSFSQFGSDLDENTKKVLEHG----KRVMEM 419
Query: 399 IFKGNCKKLSIKLPAWSLLQCLLTSAKSNSDGLVISDDIELTRMNGPKDRVFEWFIGPLL 458
I + N K P + + L A + + I D E+ + K R+ E F G
Sbjct: 420 IKQPNGK------PYSQVHEALFLFAINKAFIKFIPVD-EIAKF---KQRITEEFNGSHP 469
Query: 459 IMKEQLKNLE----LEESEETCLKELVMRSKNDIPEDWDSTGFPS 499
+ KE E LE +T K LV R + + D+D T F S
Sbjct: 470 LFKELSNKKEFTEDLESKTKTAFKMLVKRFISTL-TDYDITKFGS 513
>YHK8_YEAST (P38776) Hypothetical transport protein YHR048W
Length = 514
Score = 32.0 bits (71), Expect = 4.4
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 171 TFVFTPIFHTWMN*EKI*TLKKSHLISTFDVVL-ITSIAIWKSPYMLFRGWKRL--LEDL 227
+ V T I +W TL +H+I F + ++++ I + L G L L +L
Sbjct: 83 SMVITMISSSW-------TLPSTHIIEHFHISHEVSTLGITLYVFGLGIGPLFLSPLSEL 135
Query: 228 VGRRGPFLETECVPFAGLAIILWPLAVLGAVLAAIIVSF----FLSLYGGVVVHQEDSLK 283
GRR FL + + +W + G + + F FLS+ GG + D +
Sbjct: 136 YGRRITFLYALTLSIIWQCLTIWSKTITGVMFGRFLSGFFGSAFLSVAGGAIADIFDKDQ 195
Query: 284 MGFAYIVSVVSLF 296
+G + S F
Sbjct: 196 IGIPMAIYTTSAF 208
>YOBJ_BACSU (O34774) Hypothetical protein yobJ
Length = 280
Score = 31.2 bits (69), Expect = 7.4
Identities = 11/38 (28%), Positives = 25/38 (64%)
Query: 142 MFKTNFIIASLMVVGQQFKQAVQWFRMSQTFVFTPIFH 179
+F+TN+I++++ V + FK+ + +F + F F P+ +
Sbjct: 153 LFRTNYILSAVFVFVRWFKETLAFFVGASAFAFIPLLY 190
>M172_HUMAN (Q14596) Membrane component, chromosome 17, surface
marker 2 (Next to BRCA1 gene 1 protein) (1A1-3B)
Length = 966
Score = 31.2 bits (69), Expect = 7.4
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 415 SLLQCLLTSAKSNSDGLVISDDIELTRMNGPKDRVFEWFIGPLLIMKEQLKNLELEESEE 474
SL++ L + K+ D V S + + P+D+ +WF L +EQ+ N +E+ E+
Sbjct: 116 SLVRVLGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQ 175
Query: 475 TCLKELVMR--------SKNDIPEDWDSTGFPSKDNVRRAQLQAIIRRLQGIGSSMSRMP 526
++LV++ S+ +P ++ P RR+ G+ S P
Sbjct: 176 KLHEKLVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCP 235
Query: 527 TF 528
++
Sbjct: 236 SY 237
>YNJC_ECOLI (P76224) Hypothetical ABC transporter permease protein
ynjC
Length = 511
Score = 30.8 bits (68), Expect = 9.7
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 181 WMN*EKI*TLKKSHLISTFDVVLITSIAIWKSPYMLFRGWKRLLEDLVGRRGPFLETECV 240
W+ I K L S ++L+ + + Y+L+R W+R + + G R P T +
Sbjct: 226 WLTQGDIDQQTKGALASLLLMLLLAAYVLLS--YLLWRSWRRTIPRVDGVRKP--ATPLL 281
Query: 241 PFAGLAIILWPLAVLGAVLAAII 263
P LAI L VL VL AI+
Sbjct: 282 PGNTLAIFLPLTGVLCVVLLAIL 304
>RB24_MOUSE (P35290) Ras-related protein Rab-24 (Rab-16)
Length = 203
Score = 30.8 bits (68), Expect = 9.7
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 1 MIIINVECIVKVNIHYKVIHLAGALIGPI------AFA--IMVVGNSAVIIGLWTAHVFW 52
++++ E + K ++ + +H L+GP AF +M VG+ V +G+W
Sbjct: 10 VVMLGKEYVGKTSLVERYVH-DRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSE 68
Query: 53 TYYCVARLYFL-SKFFVICFICSNSISLINCWPLKTEQRGLDWFSRLR 99
Y ++R+Y+ +K ++C+ ++S S +R W LR
Sbjct: 69 RYEAMSRIYYRGAKAAIVCYDLTDSSSF---------ERAKFWVKELR 107
>OR13_MOUSE (Q8VFK8) Putative olfactory receptor 201-1
Length = 317
Score = 30.8 bits (68), Expect = 9.7
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 232 GPFLETECVPFAGLAI---------ILWPLAVLGAVLAAIIVSFFLSLYGGVVVHQEDSL 282
G FL TEC A +A +L+P+ + G++ ++ + FL+ +G +H +
Sbjct: 112 GSFLGTECFLLAMMAYDRYAAIWNPLLYPVLMSGSICFMLVSTSFLAGFGNAAIHTGMTF 171
Query: 283 KMGF 286
++ F
Sbjct: 172 RLSF 175
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.333 0.144 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,704,067
Number of Sequences: 164201
Number of extensions: 2370305
Number of successful extensions: 7026
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7023
Number of HSP's gapped (non-prelim): 7
length of query: 558
length of database: 59,974,054
effective HSP length: 115
effective length of query: 443
effective length of database: 41,090,939
effective search space: 18203285977
effective search space used: 18203285977
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144618.8