BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144564.12 + phase: 0
(357 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DDL_BUCBP (P59435) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-a... 42 0.003
NFC3_HUMAN (Q12968) Nuclear factor of activated T-cells, cytopla... 33 1.1
DNAK_THEVO (Q97BG8) Chaperone protein dnaK (Heat shock protein 7... 33 1.1
MDR2_RAT (Q08201) Multidrug resistance protein 2 (P-glycoprotein... 33 1.4
PURL_THEMA (Q9X0X3) Phosphoribosylformylglycinamidine synthase I... 31 4.2
MATK_SOYBN (Q9TKS6) Maturase K (Intron maturase) 31 4.2
VATI_ARCFU (O29106) V-type ATP synthase subunit I (EC 3.6.3.14) ... 31 5.5
TRBP_MOUSE (P97473) TAR RNA-binding protein 2 (Protamine-1 RNA b... 31 5.5
GATB_DEIRA (Q9RRD7) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 31 5.5
DNAK_THEAC (P50023) Chaperone protein dnaK (Heat shock protein 7... 31 5.5
DAPF_BACHD (Q9K7F0) Diaminopimelate epimerase (EC 5.1.1.7) (DAP ... 30 7.2
CBIX_METKA (Q8TY77) Sirohydrochlorin cobaltochelatase (EC 4.99.1... 30 7.2
SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohe... 30 9.4
CUL1_DROME (Q24311) Cullin homolog 1 (Lin-19 homolog protein) 30 9.4
>DDL_BUCBP (P59435) D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
Length = 309
Score = 41.6 bits (96), Expect = 0.003
Identities = 39/145 (26%), Positives = 65/145 (43%), Gaps = 15/145 (10%)
Query: 52 FSSLFAHLFHTRHNLPSLSLPFSSVPSLAFSCYNIGLKICALKAFRHAICLTFFLQTNSL 111
F+ F F + N+ L LP P+ S +IG+ I + C T F+ NS+
Sbjct: 125 FNKKFLQKF--KKNISLLGLPIIVKPNQEGS--SIGITIVYSYETLYKACKTAFIFDNSI 180
Query: 112 II-----GFDHRKSVLSQ--IPSTNECPENIMINLNHEKSSSRAVYEYFTD----KHEDI 160
+I G ++ S+L + +P CPEN N N + S+R Y + K ++
Sbjct: 181 LIEKFIYGEEYTISILGKKILPIIRICPENTFYNYNSKYLSNRTTYFCPSGLNKLKELEL 240
Query: 161 KTSNGVVPSLVDSKDKGRVELILKY 185
K +++D GRV++I+ Y
Sbjct: 241 KKITLTAWNIIDGTGWGRVDVIMDY 265
>NFC3_HUMAN (Q12968) Nuclear factor of activated T-cells,
cytoplasmic 3 (T cell transcription factor NFAT4)
(NF-ATc3) (NF-AT4) (NFATx)
Length = 1075
Score = 33.1 bits (74), Expect = 1.1
Identities = 25/95 (26%), Positives = 40/95 (41%), Gaps = 17/95 (17%)
Query: 1 MKKNIQFSFPPCVEIGYRS--------LRSDAALEAIAKASEDKVPNIVLYNYPSFSGAF 52
M+ N+ ++ P C+ I S + DA L + + +I ++ S SG+
Sbjct: 805 MQTNVVYNGPTCLPINAASSQEFDSVLFQQDATLSGLVNLGCQPLSSIPFHS--SNSGST 862
Query: 53 SSLFAHLFHTRHNLPSLSLPFSSVPSLAFSCYNIG 87
L AH H+ H LP L S+ + C N G
Sbjct: 863 GHLLAHTPHSVHTLPHLQ-------SMGYHCSNTG 890
>DNAK_THEVO (Q97BG8) Chaperone protein dnaK (Heat shock protein 70)
(Heat shock 70 kDa protein) (HSP70)
Length = 613
Score = 33.1 bits (74), Expect = 1.1
Identities = 30/152 (19%), Positives = 67/152 (43%), Gaps = 13/152 (8%)
Query: 148 AVYEYFTDKHE-----DIKTSNGVVPSLVDSKDKGRVELILKYIEDADLRHWSLPDIKPF 202
A+ Y D + D++ G L D+ +K ++EL D DL + ++ P
Sbjct: 212 AIVNYIADDFQKKEGIDLRKDRGAYIRLRDAAEKAKIELSTTLSSDIDLPYITVTSSGPK 271
Query: 203 NIGLSEWRSRFSCISNPYMFKQLLELSVEELIAKGNSSLLARRNAASKLL--DKVFRVRL 260
+I ++ R++ + +P + + V+ I K ++ +KLL R+
Sbjct: 272 HIKMTLTRAKLEELISPIVER------VKAPIDKALEGAKLKKTDITKLLFVGGPTRIPY 325
Query: 261 GRGFYGECLGVRADGNSNLSDEIGMLLSVKSA 292
R + + LG++A+G + + + + +++ A
Sbjct: 326 VRKYVEDYLGIKAEGGVDPMEAVAIGAAIQGA 357
>MDR2_RAT (Q08201) Multidrug resistance protein 2 (P-glycoprotein 2)
(P-glycoprotein 3)
Length = 1278
Score = 32.7 bits (73), Expect = 1.4
Identities = 23/86 (26%), Positives = 43/86 (49%), Gaps = 7/86 (8%)
Query: 232 ELIAKGNSSLLARRNAASKLLDKVFRVRLGRGFYGECLGVRADGNSNLSDEIGMLLSVKS 291
++IA ++ + + S+L+ K G Y + ++ G+ LS+E + LS +
Sbjct: 595 DVIAGFEDGVIVEQGSHSELIKK-------EGIYFRLVNMQTSGSQILSEEFEVELSDEK 647
Query: 292 ASIGLRPIGAVIFMQRNNLKMCLRSS 317
A+ G+ P G + RN+ K L+SS
Sbjct: 648 AAGGVAPNGWKARIFRNSTKKSLKSS 673
>PURL_THEMA (Q9X0X3) Phosphoribosylformylglycinamidine synthase II
(EC 6.3.5.3) (FGAM synthase II)
Length = 603
Score = 31.2 bits (69), Expect = 4.2
Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 163 SNGVVPSLVDSKDKGRVELILKYIEDADLRHWSLPDIKPFNIGLSEWRSRFSCISNPYMF 222
+ GV+ + + KG + I+ +++ LR PD++P+ I +SE + R + +++P
Sbjct: 239 AGGVLSATSELVAKGNLGAIV-HLDRVPLRE---PDMEPWEILISESQERMAVVTSPQKA 294
Query: 223 KQLLELSVEELI 234
++LE++ + L+
Sbjct: 295 SRILEIARKHLL 306
>MATK_SOYBN (Q9TKS6) Maturase K (Intron maturase)
Length = 505
Score = 31.2 bits (69), Expect = 4.2
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 208 EWRSRFSCISNPYMFKQLLELSVEELIAKGNSSLLARRNAASKLLDKVFRVRLGRGFYGE 267
+W S F SNP F L L V E S L RN +SKL K FRV R F+ E
Sbjct: 193 KWISTFFSKSNPRFFLFLYNLYVWEY----ESIFLFLRNKSSKLRLKYFRVFFERIFFYE 248
>VATI_ARCFU (O29106) V-type ATP synthase subunit I (EC 3.6.3.14)
(V-type ATPase subunit I)
Length = 676
Score = 30.8 bits (68), Expect = 5.5
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 183 LKYIEDADLRHWSLPDIKPFNIGLSEWRSRFSCISNPYMFKQLLELSVEELIAKGNSSLL 242
L+ +++ R +PD++ F +SE + + K+ +E +EE+ K +LL
Sbjct: 193 LRILQECGYREIQVPDVEDFEAKISEIEKEIESLKSR---KEQVEKEIEEVKVKEAETLL 249
Query: 243 ARRNAASKLLDK 254
A S +DK
Sbjct: 250 AIEEYLSSQMDK 261
>TRBP_MOUSE (P97473) TAR RNA-binding protein 2 (Protamine-1 RNA
binding protein) (PRM-1 RNA binding protein)
Length = 365
Score = 30.8 bits (68), Expect = 5.5
Identities = 24/67 (35%), Positives = 30/67 (43%), Gaps = 10/67 (14%)
Query: 234 IAKGNSSLLARRNAASKLLDKVFRVRLGRGFYGECLGVRADGNSNLSDEIGMLLSVKSAS 293
I G S LA+RNAA+K+L +V V L DGN D+ + V S
Sbjct: 203 IGSGTSKKLAKRNAAAKMLLRVHTVPLD----------ARDGNEAEPDDDHFSIGVSSRL 252
Query: 294 IGLRPIG 300
GLR G
Sbjct: 253 DGLRNHG 259
>GATB_DEIRA (Q9RRD7) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B (EC 6.3.5.-) (Asp/Glu-ADT
subunit B)
Length = 479
Score = 30.8 bits (68), Expect = 5.5
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 138 NLNHEKSSSRAVYEYFTDKHEDIKTSNGVVPSLVDSKDKGRVELILKYIED--ADLRHWS 195
NLN +S +RA+ EY + + + G++ D+G + L ++ AD R++
Sbjct: 215 NLNSFRSVARAI-EYEAARQAKVLDAGGIITQDTLGWDEGGQKTFLMRTKEGEADYRYFP 273
Query: 196 LPDIKPFNI---GLSEWRSRFSCISNPYMFKQLLELSVEELIAKGNSSLLARRNAASKLL 252
PD+ P +I ++E R+R P + Q LE + + ++ L+ + SK
Sbjct: 274 EPDLPPLDITPEWIAEVRARM-----PELPAQKLERYRAAGVRESDAQTLSLSVSLSKFY 328
Query: 253 DKVFR 257
D+ +
Sbjct: 329 DEALK 333
>DNAK_THEAC (P50023) Chaperone protein dnaK (Heat shock protein 70)
(Heat shock 70 kDa protein) (HSP70)
Length = 613
Score = 30.8 bits (68), Expect = 5.5
Identities = 29/152 (19%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 148 AVYEYFTDKHE-----DIKTSNGVVPSLVDSKDKGRVELILKYIEDADLRHWSLPDIKPF 202
A+ Y D + D++ L D+ +K ++EL D DL + ++ + P
Sbjct: 211 AIVNYIADDFQKKEGIDLRKDRSAYIRLRDAAEKAKIELSTTLSTDIDLPYITVTNSGPK 270
Query: 203 NIGLSEWRSRFSCISNPYMFKQLLELSVEELIAKGNSSLLARRNAASKLL--DKVFRVRL 260
+I ++ R++ + +P + + V+ I K ++ +KLL R+
Sbjct: 271 HIKMTLTRAKLEELISPIVER------VKGPIDKALEGAKLKKTEITKLLFVGGPTRIPY 324
Query: 261 GRGFYGECLGVRADGNSNLSDEIGMLLSVKSA 292
R + + LG++A+G + + + + +++ A
Sbjct: 325 VRKYVEDYLGIKAEGGVDPMEAVAIGAAIQGA 356
>DAPF_BACHD (Q9K7F0) Diaminopimelate epimerase (EC 5.1.1.7) (DAP
epimerase)
Length = 286
Score = 30.4 bits (67), Expect = 7.2
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 152 YFTDKHEDIKTSNGVVPSLVDSKDKGRVELILKYIEDADLRHWSLPDI---------KPF 202
Y + D++T G+V + V D G V+ + + + L +P + +PF
Sbjct: 89 YVKETSFDVETLGGLVKATVHPNDNGLVDTVTVNMGEPRLGRAQIPMLGEEAAEVVAEPF 148
Query: 203 NIGLSEWRSRFSCISNPY--MFKQLLE 227
IG E+R + NP+ MF +E
Sbjct: 149 TIGEKEYRLTAVSMGNPHAIMFIDTIE 175
>CBIX_METKA (Q8TY77) Sirohydrochlorin cobaltochelatase (EC
4.99.1.3) (CbiXS)
Length = 143
Score = 30.4 bits (67), Expect = 7.2
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 9/57 (15%)
Query: 13 VEIGYRSLRSDAALEAIAKASEDKVPNIVLYNYPSFSGAFSSLFAHLFHTRHNLPSL 69
VE+G+ L EA+ KA+E V IV+ P F AH HT+ ++P +
Sbjct: 36 VEVGFMELCEPTVQEAVKKAAESGVDKIVV--VPVF-------LAHGVHTKRDIPKM 83
>SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohesin
complex subunit psm1) (Chromosome segregation protein
smc1)
Length = 1233
Score = 30.0 bits (66), Expect = 9.4
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 4/62 (6%)
Query: 269 LGVRADGNSNLSDEIGMLLSVKSASIGLRPIGAVIFMQRNNLKMCLRSSDNATDTSEVAK 328
+G G SNL D I +L VKS+ + + +I+ K+ R + + TD+S
Sbjct: 31 IGPNGAGKSNLMDAISFVLGVKSSHLRSTNVKELIYRG----KILQRDNTDFTDSSNPTT 86
Query: 329 AY 330
AY
Sbjct: 87 AY 88
>CUL1_DROME (Q24311) Cullin homolog 1 (Lin-19 homolog protein)
Length = 774
Score = 30.0 bits (66), Expect = 9.4
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 129 NECPENIMINLNHEKSSSRAVYEYFTDKHEDIKTSNGVVPSLVDSKDKGRVELILKYIED 188
+E E IM HEKS +R+ Y F D TS PS S G +L+ K + D
Sbjct: 21 SELVEGIMQVFEHEKSLTRSQYMRFYTHVYDYCTSVSAAPSGRSSGKTGGAQLVGKKLYD 80
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,517,648
Number of Sequences: 164201
Number of extensions: 1649366
Number of successful extensions: 4135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4131
Number of HSP's gapped (non-prelim): 14
length of query: 357
length of database: 59,974,054
effective HSP length: 111
effective length of query: 246
effective length of database: 41,747,743
effective search space: 10269944778
effective search space used: 10269944778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC144564.12