BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144541.4 - phase: 0
(412 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A33_PLEWA (Q02084) Zinc-binding protein A33 47 1e-04
KJ45_SCHPO (O74526) Probable serine/threonine-protein kinase C70... 43 0.002
RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a 42 0.002
TRIP_MOUSE (Q8VIG6) TRAF-interacting protein 41 0.006
TRIP_HUMAN (Q9BWF2) TRAF-interacting protein 41 0.006
HMAA_TRICA (Q07961) Homeobox protein abdominal-A homolog 40 0.011
MKR3_MOUSE (Q60764) Makorin 3 (Zinc finger protein 127) 40 0.014
S24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-rela... 39 0.019
NF7B_XENLA (Q92021) Nuclear factor 7, brain (xnf7) (xnf7-B) 39 0.024
RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b 39 0.032
DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr... 39 0.032
RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun... 38 0.041
RAPS_MOUSE (P12672) 43 kDa receptor-associated protein of the sy... 38 0.041
RAPS_HUMAN (Q13702) 43 kDa receptor-associated protein of the sy... 38 0.041
RAPS_CHICK (O42393) 43 kDa receptor-associated protein of the sy... 37 0.071
RH1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b 37 0.092
DZP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) ... 37 0.092
VIT1_CHICK (P87498) Vitellogenin I precursor (Minor vitellogenin... 37 0.12
ROB3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-l... 37 0.12
RAPS_TORCA (P09108) 43 kDa receptor-associated protein of the sy... 37 0.12
>A33_PLEWA (Q02084) Zinc-binding protein A33
Length = 624
Score = 46.6 bits (109), Expect = 1e-04
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 5 IDDGDGDTRHRKSSDS-------VPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFN 57
I+DGDGD + RK D + C +C + + L+CGH F CI ++
Sbjct: 137 IEDGDGDQKKRKVDDEEDDFTEDLTCPLCRSLFKEP-----VILECGHNFCKHCIDKSWE 191
Query: 58 AKGAMQCPNCRKI 70
+ A CP C+++
Sbjct: 192 SASAFSCPECKEV 204
>KJ45_SCHPO (O74526) Probable serine/threonine-protein kinase
C70.05c (EC 2.7.1.37)
Length = 781
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 28/158 (17%)
Query: 198 YTVPAVVLHYHSWDHHSSHFSSGSSHLGAADQPSVSQSNQRPTRGSEATRSGSYMHPYPV 257
+T PA + + HH H S + L A P + PT S + GS+++ + +
Sbjct: 100 HTAPATPIPVSASRHHKPHHSGLKNLLEKAMHPGHKSNANSPTSESPSKGFGSFINNH-I 158
Query: 258 GHSSVARAGNSAASSMIPPYPGSNARARDRVEALQAYYH-QQQPPNSTTVRPPV---ASS 313
H + + +S N ++ D + Q+Y H + PPNS T R PV A+S
Sbjct: 159 LHKNTSSHPSSPV----------NGKSSD-IHKSQSYQHLKNSPPNSRTARKPVPRRANS 207
Query: 314 ARRSSGH------------SRSAPLASLSSPPDQSGSY 339
A + G SRSA L S + P + + Y
Sbjct: 208 ASHNLGSTKSPNGNAKESLSRSAELPSKAKPMEINNGY 245
>RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a
Length = 185
Score = 42.4 bits (98), Expect = 0.002
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 16 KSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKI 70
+ DS C+ICL +D + L CGH FH++CI ++ + CP+CR+I
Sbjct: 95 EEGDSTECAICLTDFADGEEIRVLPL-CGHSFHVECIDKWLVSRSS--CPSCRRI 146
>TRIP_MOUSE (Q8VIG6) TRAF-interacting protein
Length = 470
Score = 40.8 bits (94), Expect = 0.006
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 23 CSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
C+IC + + R A + CGH FHL C+ F + CP CR
Sbjct: 7 CTICSDFFDHS--RDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR 50
>TRIP_HUMAN (Q9BWF2) TRAF-interacting protein
Length = 469
Score = 40.8 bits (94), Expect = 0.006
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 23 CSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCR 68
C+IC + + R A + CGH FHL C+ F + CP CR
Sbjct: 7 CTICSDFFDHS--RDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR 50
>HMAA_TRICA (Q07961) Homeobox protein abdominal-A homolog
Length = 343
Score = 40.0 bits (92), Expect = 0.011
Identities = 27/97 (27%), Positives = 48/97 (48%), Gaps = 6/97 (6%)
Query: 194 MSTSYTVPAVVLHYHSWDHHSSHFSSGSSHLGAA-DQPSVSQSNQRPTRGSEATRSGSYM 252
MS+ + + +++ YH HH F S ++ AA S S S+ + + S +T + M
Sbjct: 1 MSSKFIIDSMLPKYHQQFHHQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAARM 60
Query: 253 HPYPVG----HSSVARA-GNSAASSMIPPYPGSNARA 284
+PY H + A A G +A+ SM+P + + + A
Sbjct: 61 YPYVSAAHHHHQAAAAAFGAAASGSMVPSFSSTASSA 97
>MKR3_MOUSE (Q60764) Makorin 3 (Zinc finger protein 127)
Length = 544
Score = 39.7 bits (91), Expect = 0.014
Identities = 41/142 (28%), Positives = 59/142 (40%), Gaps = 32/142 (22%)
Query: 15 RKSSDSVPCSICLEIV---SDNGDRSFAKL-QCGHQFHLDCI-----GSAFNAKGAMQCP 65
++S D V C IC+E+V +D DR F L C H + L CI + F + + CP
Sbjct: 340 QRSMDKV-CGICMEVVYEKADPTDRRFGILFSCNHTYCLRCIRRWRSATQFENRISKSCP 398
Query: 66 NCRKIEKGQWLYANGSRSYPEFNMEDWTRDDDVYDLSYSEMSL--------GVHWCPFGN 117
CR ++G EF +E+ + + MS G+ CPFG
Sbjct: 399 QCR--------VSSGFVIPSEFWVEEEEEKEKLVQQYKEGMSQKACRYFAGGLGHCPFGE 450
Query: 118 FAQLPSSFEEREYSPIPYHDAP 139
F F + EY P + D P
Sbjct: 451 FC-----FYKHEY-PEGWRDQP 466
>S24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related
protein A) (Fragment)
Length = 1078
Score = 39.3 bits (90), Expect = 0.019
Identities = 38/128 (29%), Positives = 52/128 (39%), Gaps = 11/128 (8%)
Query: 278 PGSNARARDRVEALQAYYHQQQPPNSTTVRPPVASSARRSSGHSRSAPLASLSSPPDQSG 337
P SN + Q+ Y Q T RPPVAS+ S HS AP L P Q+
Sbjct: 44 PSSNTSKDFDPVSGQSNYGGSQGSGQTLNRPPVASNPVTPSLHSGPAPRMPL--PASQNP 101
Query: 338 SYIYLPGRNFQEETRLPSHFH--------AWERDHLP-SSSLNQVGRESSWRAYHQTASG 388
+ +P +F E LP + A + +H P +SS V +S HQ S
Sbjct: 102 ATTPMPSSSFLPEANLPPPLNWQYNYPSTASQTNHCPRASSQPTVSGNTSLTTNHQYVSS 161
Query: 389 TDPGFRSS 396
P ++S
Sbjct: 162 GYPSLQNS 169
>NF7B_XENLA (Q92021) Nuclear factor 7, brain (xnf7) (xnf7-B)
Length = 609
Score = 38.9 bits (89), Expect = 0.024
Identities = 15/52 (28%), Positives = 26/52 (49%), Gaps = 5/52 (9%)
Query: 18 SDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRK 69
++ + C +C+E+ D + CGH F CI A+ + + CP CR+
Sbjct: 140 AEELTCPLCVELFKDP-----VMVACGHNFCRSCIDKAWEGQSSFACPECRE 186
>RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b
Length = 200
Score = 38.5 bits (88), Expect = 0.032
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 8 GDGDTRHRKSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNC 67
GDGD+ S C+IC+ S+ + L C H FH+ CI ++ + CP+C
Sbjct: 105 GDGDS-------STECAICITEFSEGEEIRILPL-CSHAFHVACIDKWLTSRSS--CPSC 154
Query: 68 RKI 70
R+I
Sbjct: 155 RRI 157
>DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian
atrophy protein)
Length = 1185
Score = 38.5 bits (88), Expect = 0.032
Identities = 48/185 (25%), Positives = 71/185 (37%), Gaps = 30/185 (16%)
Query: 141 PMFTEHSAVSSGSHPCPYIAYVGPVHPSTSNSGG----TVSEVSNFNHWNA--------R 188
P T S SSG+ P P P T+ GG + +NF H R
Sbjct: 255 PPTTPISVSSSGASGAP------PTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALR 308
Query: 189 PIHGDMSTSYTVPAVVLHYHSWDHHSSHFSSGSSHLGAADQPSVSQSNQRPTRGSEATRS 248
P++ ++ + A L H H+ G G P+++ S S + +
Sbjct: 309 PLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPA 368
Query: 249 GSYMHPYPVGHSSVARAGNSAASSM--IPPYPGSNARARDRVEALQAYYHQQQPPNSTTV 306
PY SS A A +S++SS P+P S +AL +Y H PP S +V
Sbjct: 369 PPMRFPYSSSSSSSAAASSSSSSSSSSASPFPAS--------QALPSYPHSFPPPTSLSV 420
Query: 307 --RPP 309
+PP
Sbjct: 421 SNQPP 425
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (Fragment)
Length = 902
Score = 38.1 bits (87), Expect = 0.041
Identities = 59/234 (25%), Positives = 87/234 (36%), Gaps = 21/234 (8%)
Query: 129 EYSPIPYHDAPGPMFTEHSAVSSGSHPC--PYIAYVGPVH--------PSTSNSGG---T 175
E S + Y D PG +S + P PY A + P + PS NS G
Sbjct: 653 EPSNVSYPDTPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFRGDFSPSAMNSPGYNAN 712
Query: 176 VSEVSNFNHWNARPIHGDMSTSY--TVPAVVLHYHSWDHHSSHFSSGSSHLGAADQPSVS 233
S S++ ++ P + S SY T P+ S+ S +S S PS S
Sbjct: 713 KSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYS 771
Query: 234 QSNQ--RPTRGSEATRSGSYMHPYPVGHSSVARAGNSAASSMIPPYPGSNARARDRVEAL 291
++ PT S + S SY P +S + + + + S P P + +
Sbjct: 772 PTSPFYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 830
Query: 292 QAYY--HQQQPPNSTTVRPPVASSARRSSGHSRSAPLASLSSPPDQSGSYIYLP 343
+Y P S + P S + S +S S+P S SSP S Y P
Sbjct: 831 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSP 884
>RAPS_MOUSE (P12672) 43 kDa receptor-associated protein of the
synapse (RAPsyn) (Acetylcholine receptor-associated 43
kDa protein) (43 kDa postsynaptic protein)
Length = 411
Score = 38.1 bits (87), Expect = 0.041
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 5/47 (10%)
Query: 23 CSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRK 69
C +C E + + R A L C H FHL C+ + G CPNCR+
Sbjct: 362 CGLCGESIGERNSRLQA-LPCSHIFHLRCLQN----NGTRSCPNCRR 403
>RAPS_HUMAN (Q13702) 43 kDa receptor-associated protein of the
synapse (RAPsyn) (Acetylcholine receptor-associated 43
kDa protein) (43 kDa postsynaptic protein)
Length = 411
Score = 38.1 bits (87), Expect = 0.041
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 5/47 (10%)
Query: 23 CSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRK 69
C +C E + + R A L C H FHL C+ + G CPNCR+
Sbjct: 362 CGLCGESIGEKNSRLQA-LPCSHIFHLRCLQN----NGTRSCPNCRR 403
>RAPS_CHICK (O42393) 43 kDa receptor-associated protein of the
synapse (RAPsyn) (Acetylcholine receptor-associated 43
kDa protein) (43 kDa postsynaptic protein)
Length = 411
Score = 37.4 bits (85), Expect = 0.071
Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 5/48 (10%)
Query: 23 CSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKI 70
C +C E + + ++ A L C H FHL C+ G CPNCR++
Sbjct: 362 CGMCGESIGEKNNQLQA-LPCSHFFHLKCL----QTNGTRGCPNCRRL 404
>RH1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b
Length = 157
Score = 37.0 bits (84), Expect = 0.092
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 23 CSICL-EIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKIEKGQWLYANGS 81
C++CL + VSD+ R K CGH FH C+ + CP CR ++L S
Sbjct: 85 CTVCLSDFVSDDKIRQLPK--CGHVFHHRCLDRWIVDCNKITCPICR----NRFLPEEKS 138
Query: 82 RSYPEFNMEDWTRDD 96
+ ++ DW RD+
Sbjct: 139 TPF-DWGTSDWFRDE 152
>DZP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-)
(DAZ-interacting protein 3 homolog)
Length = 1204
Score = 37.0 bits (84), Expect = 0.092
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 7 DGDGDTRHRKSSDSVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPN 66
+GD D + + + PC IC E +S + + L C H+FH CI +G CP
Sbjct: 1129 EGDKDMDNEEEEEE-PCVICHENLSPE---NLSVLPCAHKFHSQCIRPWLMQQGT--CPT 1182
Query: 67 CR 68
CR
Sbjct: 1183 CR 1184
>VIT1_CHICK (P87498) Vitellogenin I precursor (Minor vitellogenin)
[Contains: Lipovitellin I (LVI); Phosvitin (PV);
Lipovitellin II (LVII); YGP42]
Length = 1912
Score = 36.6 bits (83), Expect = 0.12
Identities = 39/145 (26%), Positives = 62/145 (41%), Gaps = 11/145 (7%)
Query: 206 HYHSWDHHSSHFSSGSSHLGAADQPSVSQ--SNQRPTRGSEATRSGSYMHPYPVGHSSVA 263
H+HS SS SS SS G++ S S S++R ++ S S+ H HSS
Sbjct: 1351 HWHSGHRTSSSSSSSSSESGSSHSNSSSSDSSSRRSHMSDSSSSSSSHRHGEKAAHSSRR 1410
Query: 264 RAGNSAASSMIPPYPGSNARARDRVEALQAYYHQQQPPNSTTVRPPVASSARRSSGHSRS 323
+ AAS+ P ++ R+R + PP T V V S R+ G+ +
Sbjct: 1411 SPTSRAASAHHRP---GSSLTRER-----NFLGDVIPPGITIVAQAVRSD-NRNQGYQAT 1461
Query: 324 APLASLSSPPDQSGSYIYLPGRNFQ 348
A + S ++ D + L N++
Sbjct: 1462 AYVRSDAAKVDVQLVVVQLAETNWK 1486
>ROB3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like
protein 3)
Length = 1386
Score = 36.6 bits (83), Expect = 0.12
Identities = 60/263 (22%), Positives = 92/263 (34%), Gaps = 28/263 (10%)
Query: 170 SNSGGTVSEVSNFNHWNARPIHGDMSTSYTVPAV---------VLHYHSWDHHSSHFSSG 220
S+SGG + S + P +G ST+ P+ + H H G
Sbjct: 1127 SSSGGCLVTPSRRETPSPTPSYGQQSTATLTPSPPDPPQPPTDMPHLHQMPRR---VPLG 1183
Query: 221 SSHLGAADQPSVSQSNQRPTRGSEATRSGSYMHPYPVGHSSVARAGNS--AASSMIPPYP 278
S + QP + RP + ++ P P ++ + G + M PP
Sbjct: 1184 PSSPLSVSQPMLGIREARPAGLGAGPAASPHLSPSPAPSTASSAPGRTWQGNGEMTPPLQ 1243
Query: 279 GSNARARDRVEALQAYYHQQQPPNSTTVRPPVASSARRSSGHSRSAPLASLSS-PPDQSG 337
G AR R + +AL Y ++ P PP+ +S S+SS ++SG
Sbjct: 1244 GPRARFRKKPKALP--YRRENSPGDLP-PPPLPPPEEEASWALELRAAGSMSSLERERSG 1300
Query: 338 SYIYLPGRNFQEETRLPSHFHAWERDHLPS--------SSLNQVGRESSWRAYHQTASGT 389
+ + L AW PS S+ + G SS R +
Sbjct: 1301 ERKAVQAVPLAAQRVLHPDEEAWLPYSRPSFLSRGQGTSTCSTAGSNSS-RGSSSSRGSR 1359
Query: 390 DPGFRSSSFRLRSDSERTPSQNR 412
PG S + RS S+R P Q R
Sbjct: 1360 GPGRSRSRSQSRSQSQR-PGQKR 1381
>RAPS_TORCA (P09108) 43 kDa receptor-associated protein of the
synapse (RAPSYN) (Acetylcholine receptor-associated 43
kDa protein) (43 kDa postsynaptic protein)
Length = 411
Score = 36.6 bits (83), Expect = 0.12
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 23 CSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRK 69
C +C E + D + A L C H FHL C+ G CPNC++
Sbjct: 362 CGLCGESIGDQNSQLQA-LPCSHLFHLKCL----QTNGNRGCPNCKR 403
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.128 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,399,166
Number of Sequences: 164201
Number of extensions: 2367166
Number of successful extensions: 5363
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 5220
Number of HSP's gapped (non-prelim): 247
length of query: 412
length of database: 59,974,054
effective HSP length: 113
effective length of query: 299
effective length of database: 41,419,341
effective search space: 12384382959
effective search space used: 12384382959
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC144541.4