BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144541.14 - phase: 0 
         (63 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DPD3_YEAST (P47110) DNA polymerase delta subunit 3                     29  2.0
AIG1_ARATH (P54120) AIG1 protein                                       29  2.0
SYM_THETN (Q8RDD1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...    28  4.5
RPGR_HUMAN (Q92834) X-linked retinitis pigmentosa GTPase regulator     28  5.8
GATA_BACST (Q93LE2) Glutamyl-tRNA(Gln) amidotransferase subunit ...    28  5.8
DNAK_LACSK (O87777) Chaperone protein dnaK (Heat shock protein 7...    27  9.9

>DPD3_YEAST (P47110) DNA polymerase delta subunit 3
          Length = 350

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 31/54 (56%), Gaps = 6/54 (11%)

Query: 1   PNGERSSSPVQLSKFLGRNKDDGVRRSAVSGKKILLKLDKTKEDKEAESKRNEL 54
           P     ++P + +    ++KD G+R +A     +L K+ K ++DKE  S++NEL
Sbjct: 140 PTARSKTTPEETTGRKSKSKDMGLRSTA-----LLAKMKKDRDDKET-SRQNEL 187


>AIG1_ARATH (P54120) AIG1 protein
          Length = 353

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 15/49 (30%), Positives = 31/49 (62%), Gaps = 1/49 (2%)

Query: 12  LSKFLGRNKDDGVRRSAV-SGKKILLKLDKTKEDKEAESKRNELLNFLN 59
           L  +LG N  D ++R  +  G++++L  +KTK+D++   + +ELL  ++
Sbjct: 180 LEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELLKLID 228


>SYM_THETN (Q8RDD1) Methionyl-tRNA synthetase (EC 6.1.1.10)
           (Methionine--tRNA ligase) (MetRS)
          Length = 638

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 12/38 (31%), Positives = 23/38 (59%)

Query: 26  RSAVSGKKILLKLDKTKEDKEAESKRNELLNFLNASFD 63
           R +  G K+L   ++  +  + ES+RNE++NF+ A  +
Sbjct: 162 RLSAYGDKLLKYYEEHPDFIQPESRRNEMINFIKAGLE 199


>RPGR_HUMAN (Q92834) X-linked retinitis pigmentosa GTPase regulator
          Length = 1020

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 14/51 (27%), Positives = 24/51 (46%)

Query: 4   ERSSSPVQLSKFLGRNKDDGVRRSAVSGKKILLKLDKTKEDKEAESKRNEL 54
           ER  S  ++S F G   D G+   +   K  + K +  K+D   +S+R  +
Sbjct: 660 EREKSTKKMSPFFGNLPDRGMNTESEENKDFVKKRESCKQDVIFDSERESV 710


>GATA_BACST (Q93LE2) Glutamyl-tRNA(Gln) amidotransferase subunit A
           (EC 6.3.5.-) (Glu-ADT subunit A)
          Length = 485

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 13  SKFLGRNKDDGVRRSAVSGKKILLKLDKTKED 44
           +++LG   D+GVR+S ++   +L KL  T E+
Sbjct: 265 NEYLGEGVDEGVRQSVLAALAVLEKLGATWEE 296


>DNAK_LACSK (O87777) Chaperone protein dnaK (Heat shock protein 70)
           (Heat shock 70 kDa protein) (HSP70)
          Length = 613

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 13  SKFLGRNKDDGVR---RSAVSGKKILLKLDKTKEDKEAESKRNELLNFLN 59
           +K LG NK+  +     S +S ++I   + + +E++EA++KR E ++  N
Sbjct: 459 AKDLGTNKEQKITIKSNSGLSDEEIDRMMKEAQENEEADTKRKEEVDLKN 508


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.307    0.129    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,692,052
Number of Sequences: 164201
Number of extensions: 207357
Number of successful extensions: 607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 6
length of query: 63
length of database: 59,974,054
effective HSP length: 39
effective length of query: 24
effective length of database: 53,570,215
effective search space: 1285685160
effective search space used: 1285685160
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)