BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144538.7 + phase: 1 /pseudo
         (632 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YTH1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associ...   199  1e-50
YTH1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associ...   197  5e-50
YTH2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated...   197  9e-50
S521_RAT (Q9QY02) Putative splicing factor YT521 (RA301-binding ...    75  5e-13
S521_HUMAN (Q96MU7) Putative splicing factor YT521                     75  5e-13
RTOA_DICDI (P54681) Protein rtoA (Ratio-A)                             43  0.002
S24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-rela...    41  0.008
NCO1_HUMAN (Q15788) Nuclear receptor coactivator 1 (EC 2.3.1.48)...    40  0.019
EWS_MOUSE (Q61545) RNA-binding protein EWS                             40  0.019
EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing...    40  0.024
RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...    39  0.032
SMF1_HUMAN (O14497) SWI/SNF-related, matrix-associated, actin-de...    39  0.041
S24B_ARATH (Q9M081) Putative protein transport protein Sec24-lik...    39  0.041
KCN3_RAT (P70605) Small conductance calcium-activated potassium ...    38  0.071
TCG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA b...    38  0.092
Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)              37  0.16
TBP_DROME (P20227) TATA-box binding protein (TATA-box factor) (T...    37  0.21
HORN_HUMAN (Q86YZ3) Hornerin                                           37  0.21
SIL1_MOUSE (Q8C0T5) Signal-induced proliferation-associated 1 li...    36  0.27
RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun...    36  0.27

>YTH1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis
           associated with cancer putative autoantigen-1 homolog)
           (DACA-1 homolog)
          Length = 559

 Score =  199 bits (507), Expect = 1e-50
 Identities = 97/182 (53%), Positives = 124/182 (67%), Gaps = 4/182 (2%)

Query: 373 SLNRPDFATDFKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDAC 432
           S N  +F  + K  + F+IKSYSED++H+SIKY +W ST +GN++LD A+     K    
Sbjct: 376 SYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGP-- 433

Query: 433 RIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHI 492
            ++L FSVN S  FCGVAEM  PV++  S   W QDKW G+F VKW  +KDVPN+Q RHI
Sbjct: 434 -VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHI 492

Query: 493 VLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQ-ERKA 551
            LENNDNKPVTNSRDTQEV L++  ++L I  +Y+  TSI DDF  YE RQ+  +  RK 
Sbjct: 493 RLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEEVVRKE 552

Query: 552 RQ 553
           RQ
Sbjct: 553 RQ 554


>YTH1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis
           associated with cancer putative autoantigen-1) (DACA-1)
          Length = 559

 Score =  197 bits (502), Expect = 5e-50
 Identities = 94/183 (51%), Positives = 125/183 (67%), Gaps = 3/183 (1%)

Query: 373 SLNRPDFATDFKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDAC 432
           S N  +F  + K  + F+IKSYSED++H+SIKY +W ST +GN++LD+A+     K    
Sbjct: 376 SYNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGP-- 433

Query: 433 RIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHI 492
            ++L FSVN S  FCGVAEM  PV++  S   W QDKW G+F V+W  +KDVPN+Q RHI
Sbjct: 434 -VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHI 492

Query: 493 VLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKAR 552
            LENNDNKPVTNSRDTQEV L++  ++L I  +Y+  TSI DDF  YE RQ+  +  +  
Sbjct: 493 RLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKE 552

Query: 553 QQS 555
           +QS
Sbjct: 553 RQS 555


>YTH2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated
           protein 8) (NY-REN-2 antigen) (CLL-associated antigen
           KW-14)
          Length = 579

 Score =  197 bits (500), Expect = 9e-50
 Identities = 94/180 (52%), Positives = 122/180 (67%), Gaps = 3/180 (1%)

Query: 375 NRPDFATDFKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDACRI 434
           N  DF  + K  + F+IKSYSED++H+SIKY +W ST +GN++LDAAY     K     +
Sbjct: 399 NPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGP---V 455

Query: 435 FLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVL 494
           +L FSVN S  FCGVAEM   V+++     W QDKW G+F V+W  +KDVPNSQ RHI L
Sbjct: 456 YLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRL 515

Query: 495 ENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKARQQ 554
           ENN+NKPVTNSRDTQEV L++  ++L I  +Y+  TSI DDF  YE RQ+  +  K  +Q
Sbjct: 516 ENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQ 575


>S521_RAT (Q9QY02) Putative splicing factor YT521 (RA301-binding
           protein)
          Length = 738

 Score = 75.1 bits (183), Expect = 5e-13
 Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 30/270 (11%)

Query: 291 SSFGGSAISGLSANDRSFLSLENSRRHGRETASFCRCNGTLDILSEQNRGPRASKLKNHI 350
           S  G  ++S    + RS    + S    +E     R  G   I+ +++ G  AS+  ++ 
Sbjct: 274 SDSGSESVSFTDGSVRSGSGTDGSDEKKKERK---RARGISPIVFDRS-GSSASE--SYA 327

Query: 351 SSENNAIDGSKNNASTAKFQDESLNRPDFATDFKDAKFFVIKSYSEDNVHKSIKYGVWAS 410
            SE      S +  +  K Q   L      +  +DA+FF+IKS + +NV  +   GVW++
Sbjct: 328 GSEKKHEKLSSSVRAVRKDQTSKLK-----SVLQDARFFLIKSNNHENVSLAKAKGVWST 382

Query: 411 TPNGNRKLDAAYCQAKEKQDACRIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFW----- 465
            P   +KL+ A+  A+       + L FSV  S +F G A +    +   S   W     
Sbjct: 383 LPVNEKKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAG 436

Query: 466 -QQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLQQGIEMLTIFK 524
                  G F + W   +++P ++  H+    N++KPV   RD QE++L+ G ++  +F 
Sbjct: 437 MSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFP 496

Query: 525 NYETDTSILDDFDFYEDRQKAMQERKARQQ 554
             E+        D Y+   K   +R+   Q
Sbjct: 497 PDES-------IDLYQLIHKMRHKRRMHSQ 519


>S521_HUMAN (Q96MU7) Putative splicing factor YT521
          Length = 727

 Score = 75.1 bits (183), Expect = 5e-13
 Identities = 49/177 (27%), Positives = 84/177 (46%), Gaps = 19/177 (10%)

Query: 384 KDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDACRIFLFFSVNAS 443
           +DA+FF+IKS + +NV  +   GVW++ P   +KL+ A+  A+       + L FSV  S
Sbjct: 353 QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRES 406

Query: 444 AQFCGVAEMVGPVNFDKSVDFW------QQDKWSGQFPVKWHIIKDVPNSQFRHIVLENN 497
            +F G A +    +   S   W            G F + W   +++P ++  H+    N
Sbjct: 407 GKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWN 466

Query: 498 DNKPVTNSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKARQQ 554
           ++KPV   RD QE++L+ G ++  +F   E+        D Y+   K   +R+   Q
Sbjct: 467 EHKPVKIGRDGQEIELECGTQLCLLFPPDES-------IDLYQVIHKMRHKRRMHSQ 516


>RTOA_DICDI (P54681) Protein rtoA (Ratio-A)
          Length = 400

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 47/165 (28%), Positives = 71/165 (42%), Gaps = 10/165 (6%)

Query: 209 SFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQ 268
           S +   QG  GS + G  S +   +   +S    S S  Q   GS  S   S+G ++   
Sbjct: 138 SSNSGSQGSTGSSNSGSQSSTDSSNSGSQSSTDSSNSGSQGSTGSSNSGSESSGSSNSGS 197

Query: 269 RSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGLSANDRSFLSLENSRRHGRETASFCRCN 328
            S    GSS++    G  S+ GSS  GS  S  S+N  S  S   S   G E++S    +
Sbjct: 198 ESS---GSSNS----GSESSSGSSNSGSESSSGSSNSGS-ESSSGSSNSGSESSSGSSNS 249

Query: 329 GTLDILSEQNRGPRASKLKNHISSENNAIDGSKNNASTAKFQDES 373
           G+       N G  +S   ++  SE+++  GS N+ S +     S
Sbjct: 250 GSESSSGSSNSGSESSSGSSNSGSESSS--GSSNSGSESSGSSNS 292



 Score = 40.0 bits (92), Expect = 0.019
 Identities = 52/201 (25%), Positives = 79/201 (38%), Gaps = 12/201 (5%)

Query: 175 IDQQVESNFFGPRASYPSVGSFARGSFPVAPGSFSFHESQQGFDGSRSGGLWSDSSKPSE 234
           +  +V+S+      S  +  S    S     GS S   S     GS + G  S S+  SE
Sbjct: 64  LSSEVDSSDISSSGSNSTASSEGSVSSSSNSGSQSTSNSGSEASGSSNSGSQSTSNSGSE 123

Query: 235 RQ-------RSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSSSNPYGRGYLS 287
                    +S    S S  Q   GS  S   S+  +S+         S+S   G    S
Sbjct: 124 ASGSSNSGSQSSTDSSNSGSQGSTGSSNSGSQSSTDSSNSGSQSSTDSSNSGSQGSTGSS 183

Query: 288 NPGSSFGGSAISGLSANDRSFLSLEN---SRRHGRETASFCRCNGTLDILSEQNRGPRAS 344
           N GS   GS+ SG  ++  S    E+   S   G E++S    +G+       N G  +S
Sbjct: 184 NSGSESSGSSNSGSESSGSSNSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNSGSESS 243

Query: 345 KLKNHISSENNAIDGSKNNAS 365
              ++  SE+++  GS N+ S
Sbjct: 244 SGSSNSGSESSS--GSSNSGS 262



 Score = 35.8 bits (81), Expect = 0.35
 Identities = 47/157 (29%), Positives = 61/157 (37%), Gaps = 9/157 (5%)

Query: 174 GIDQQVESNFFGPRASYPSVGSFARGSFPVA-PGSFSFHESQQGFDGSRSGGLWSDSSKP 232
           G     +S+  G ++S  S  S ++GS   +  GS S   S  G + S S    S+SS  
Sbjct: 153 GSQSSTDSSNSGSQSSTDSSNSGSQGSTGSSNSGSESSGSSNSGSESSGSSNSGSESSSG 212

Query: 233 SERQ--RSFMPLSPSVPQQPIGSVRSFGPSA------GMASHQQRSLYGFGSSSNPYGRG 284
           S      S    S S  +   GS  S   S+      G  S    S  G  SSS     G
Sbjct: 213 SSNSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNSG 272

Query: 285 YLSNPGSSFGGSAISGLSANDRSFLSLENSRRHGRET 321
             S+ GSS  GS  SG S +     S   S   G+ T
Sbjct: 273 SESSSGSSNSGSESSGSSNSGSESSSDSGSSSDGKTT 309



 Score = 33.1 bits (74), Expect = 2.3
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 265 SHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGLSANDRSFLSLENSRRHGRETASF 324
           S+   S  G  SSS+  G    SN GS   GS+ SG  +   S      S   G ++++ 
Sbjct: 78  SNSTASSEGSVSSSSNSGSQSTSNSGSEASGSSNSGSQSTSNSGSEASGSSNSGSQSSTD 137

Query: 325 CRCNGTLDILSEQNRGPRASKLKNHI---SSENNAIDGSKNNASTAKFQDES 373
              +G+       N G ++S   ++    SS +++  GS+ +  ++    ES
Sbjct: 138 SSNSGSQGSTGSSNSGSQSSTDSSNSGSQSSTDSSNSGSQGSTGSSNSGSES 189


>S24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related
           protein C)
          Length = 1094

 Score = 41.2 bits (95), Expect = 0.008
 Identities = 54/185 (29%), Positives = 73/185 (39%), Gaps = 18/185 (9%)

Query: 35  TSQSGSFGSGADQPLYPPNVYA---PQAQAFYYGGFDNGNGEWDEYPSYVNNGGIEI-GS 90
           T  SG   SGA  P  P +      P + A   G F N +G +  YP        +  G 
Sbjct: 138 TQLSGMQISGAVAPAPPSSGLGFGPPTSLASASGSFPN-SGLYGSYPQGQAPPLSQAQGH 196

Query: 91  PGVYNENQSLVFHSGYGFNPQMPYGPYSP-VTSPL--------PSVGGDAQLYSPQQFPY 141
           PG+    +S    +   F P    GP  P +T PL        PSV     + SP Q   
Sbjct: 197 PGIQTPQRSAPSQAS-SFTPPASGGPRLPSMTGPLLPGQSFGGPSVSQPNHVSSPPQA-- 253

Query: 142 TPPYYNQLVPPPNLPYLNSPT-PVSQPELTNLLGIDQQVESNFFGPRASYPSVGSFARGS 200
            PP      P   LP ++SP  P  QP+     G  +  +SN+ GP  + P+ GS     
Sbjct: 254 LPPGTQMTGPLGPLPPMHSPQQPGYQPQQNGSFGPARGPQSNYGGPYPAAPTFGSQPGPP 313

Query: 201 FPVAP 205
            P+ P
Sbjct: 314 QPLPP 318


>NCO1_HUMAN (Q15788) Nuclear receptor coactivator 1 (EC 2.3.1.48)
            (NCoA-1) (Steroid receptor coactivator-1) (SRC-1)
            (RIP160) (Hin-2 protein)
          Length = 1441

 Score = 40.0 bits (92), Expect = 0.019
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 24/115 (20%)

Query: 111  QMPYGPYSPVTSPLPSVGGDAQLY--SPQQFPYTPPY-------------YNQLVPPPNL 155
            Q  +G   P +S LP   G+ +L   +PQQFPY P Y             ++QL   P  
Sbjct: 1137 QQSFGNNLPPSSGLPVQTGNPRLPQGAPQQFPYPPNYGTNPGTPPASTSPFSQLAANPEA 1196

Query: 156  PYLNSPTPVSQPELTNL-----LGIDQQVESNFFGPRASYPSVGSFARGSFPVAP 205
               N  + VS+    N+      GI+ Q++ N F     YP  G   +G    AP
Sbjct: 1197 SLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVF----QYPGAGMVPQGEANFAP 1247


>EWS_MOUSE (Q61545) RNA-binding protein EWS
          Length = 655

 Score = 40.0 bits (92), Expect = 0.019
 Identities = 75/323 (23%), Positives = 110/323 (33%), Gaps = 71/323 (21%)

Query: 23  QGTTTIGHSRDIT----SQSGSFGSGADQPLY--PPNVY----APQAQAFYYGGFDNGNG 72
           Q   T G   D++      + ++G  A    Y  PP  Y    APQA +    G+  G G
Sbjct: 39  QSYGTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYSTPTAPQAYSQPVQGY--GTG 96

Query: 73  EWDEYPSYVNNGGIEIGSPGVYNENQSLVFHSGYGFNPQMP-YGPYSPVTSPL------- 124
            +D   + V                 S    S YG  P  P YG     T+P        
Sbjct: 97  AYDSTTATVTT------------TQASYAAQSAYGTQPAYPTYGQQPTATAPTRPQDGNK 144

Query: 125 ----------------PSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQPE 168
                           PS+G     YS  Q P + P      PP   P   S +  +  +
Sbjct: 145 PAETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSSQPTSYD 204

Query: 169 LTNLLGIDQQVESNFFGPRASYPSVGSFARG---SFPVAPGSFSFHESQQGFDGSRSGGL 225
            ++    +   + + +G ++SY    S+ +    S+P   GS+S   SQ           
Sbjct: 205 QSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYSQAPSQ----------- 253

Query: 226 WSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSSSNPYGRGY 285
           +S  S    +Q SF    PS       S+  +G  +G  S    +    G  +   GRG 
Sbjct: 254 YSQQSSSYGQQSSFRQDHPS-------SMGVYGQESGGFSGPGENRSLSGPDNRGRGRGG 306

Query: 286 LSNPGSSFG--GSAISGLSANDR 306
               G S G  G    GL A +R
Sbjct: 307 FDRGGMSRGGRGGGRGGLGAGER 329



 Score = 33.1 bits (74), Expect = 2.3
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 18/197 (9%)

Query: 184 FGPRASYPSVGSFARGSFPVAP--GSFSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMP 241
           +G + +YP+ G     + P  P  G+     SQ     S +GG    S    +   S+  
Sbjct: 118 YGTQPAYPTYGQQPTATAPTRPQDGNKPAETSQPQ---SSTGGYNQPSLGYGQSNYSYPQ 174

Query: 242 LSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGL 301
           +  S P QP+ +  S+ P++  +S          S  N YG+       SS+G       
Sbjct: 175 VPGSYPMQPVTAPPSYPPTSYSSSQPTSYDQSSYSQQNTYGQPSSYGQQSSYG------- 227

Query: 302 SANDRSFLSLENSRRHGRETASFCRCNGTLDILSEQNRGPRASKLKNHISSENNAIDGSK 361
               +S    +    +  +T S+ +        S  + G ++S  ++H SS    + G +
Sbjct: 228 ---QQSSYGQQPPTSYPPQTGSYSQAPSQYSQQS-SSYGQQSSFRQDHPSS--MGVYGQE 281

Query: 362 NNASTAKFQDESLNRPD 378
           +   +   ++ SL+ PD
Sbjct: 282 SGGFSGPGENRSLSGPD 298


>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing
           sarcoma breakpoint region 1 protein)
          Length = 656

 Score = 39.7 bits (91), Expect = 0.024
 Identities = 72/310 (23%), Positives = 105/310 (33%), Gaps = 69/310 (22%)

Query: 23  QGTTTIGHSRDIT----SQSGSFGSGADQPLY--PPNVY----APQAQAFYYGGFDNGNG 72
           Q   T G   D++      + ++G  A    Y  PP  Y    APQA +    G+  G G
Sbjct: 39  QSYGTYGQPTDVSYTQAQTTATYGQTAYATSYGQPPTGYTTPTAPQAYSQPVQGY--GTG 96

Query: 73  EWDEYPSYVNNGGIEIGSPGVYNENQSLVFHSGYGFNPQMP-YGPYSPVTSPL------- 124
            +D   + V                 S    S YG  P  P YG     T+P        
Sbjct: 97  AYDTTTATVTT------------TQASYAAQSAYGTQPAYPAYGQQPAATAPTRPQDGNK 144

Query: 125 ----------------PSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQPE 168
                           PS+G     YS  Q P + P      PP   P   S T  +  +
Sbjct: 145 PTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYD 204

Query: 169 LTNLLGIDQQVESNFFGPRASYPSVGSFAR---GSFPVAPGSFSFHESQQGFDGSRSGGL 225
            ++    +   + + +G ++SY    S+ +    S+P   GS+S   SQ           
Sbjct: 205 QSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYSQAPSQ----------- 253

Query: 226 WSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSSSNPYGRGY 285
           +S  S    +Q SF    PS       S+  +G  +G  S    +    G  +   GRG 
Sbjct: 254 YSQQSSSYGQQSSFRQDHPS-------SMGVYGQESGGFSGPGENRSMSGPDNRGRGRGG 306

Query: 286 LSNPGSSFGG 295
               G S GG
Sbjct: 307 FDRGGMSRGG 316


>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6)
          Length = 1852

 Score = 39.3 bits (90), Expect = 0.032
 Identities = 57/208 (27%), Positives = 85/208 (40%), Gaps = 16/208 (7%)

Query: 84   GGIEIG---SPGVYNENQSLVFHSGYGFNPQMPYGPYSPVTSPLPSVGGDAQ-LYSPQ-- 137
            GG+  G   SP    +  +  F+ G G++P  P  P   ++   PS GG +  +YSP   
Sbjct: 1522 GGMSPGAGFSPAGNTDGGASPFNEG-GWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSP 1580

Query: 138  QFPYTPPYYNQLVP--PPNLPYLNSPTPVSQPELTNLLGIDQQVESNFFGPRASY-PSVG 194
            QF  T P+Y+   P   P  P     +PVS P  +           ++     SY P+  
Sbjct: 1581 QFSMTSPHYSPTSPSYSPTSPAAGQ-SPVS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1638

Query: 195  SFARGSFPVAPGSFSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSPSV-PQQPIGS 253
            S++  S   +P S S+  S   +  S S      S + S    ++ P SP+  P  P  S
Sbjct: 1639 SYSPTSPSYSPTSPSYSPSSPSYSPS-SPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYS 1697

Query: 254  VRSFGPSAGMASHQQRSLYGFGSSSNPY 281
              S  P+    S    S  G+  SS  Y
Sbjct: 1698 PTS--PTYSPTSPSYESGGGYSPSSPKY 1723



 Score = 35.8 bits (81), Expect = 0.35
 Identities = 46/209 (22%), Positives = 76/209 (36%), Gaps = 25/209 (11%)

Query: 13   PESSKFSNSSQGTTTIGHSRDITSQSGSFGSGADQPLYPPNVYAPQAQAFYYGGFDNGNG 72
            P S  +S SS   +    +   TS + S  S    P  P   Y+P + ++     ++G G
Sbjct: 1663 PSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSP--TYSPTSPSY-----ESGGG 1715

Query: 73   EWDEYPSYVNNGGIEIGSPGVYNENQSLVFHSGYGFNPQMP-YGPYSPVTSPLPSVGGDA 131
                 P Y  +      +   Y+        +   ++P  P Y P SP  +P    G  +
Sbjct: 1716 YSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSS 1775

Query: 132  QLYSPQQFPYTP--PYYNQLVPPPNLPYLNSPTPVSQPELTNLLGIDQQVESNFFGPRAS 189
              YSP    Y+P  P Y      P+ P  +  +P   P  +   G   Q           
Sbjct: 1776 PQYSPTSPTYSPTSPSYT-----PSSPQYSPTSPTYTPSPSEQPGTSAQYS--------- 1821

Query: 190  YPSVGSFARGSFPVAPGSFSFHESQQGFD 218
             P+  +++  S   +P S S+  S   +D
Sbjct: 1822 -PTSPTYSPSSPTYSPASPSYSPSSPTYD 1849


>SMF1_HUMAN (O14497) SWI/SNF-related, matrix-associated,
           actin-dependent regulator of chromatin subfamily F
           member 1 (SWI-SNF complex protein p270) (B120)
          Length = 1902

 Score = 38.9 bits (89), Expect = 0.041
 Identities = 56/225 (24%), Positives = 83/225 (36%), Gaps = 42/225 (18%)

Query: 91  PGVYNENQSLVFHSGYGFNPQMPYGPYS---PVTSP--LPSVGGDAQLYSPQQFPYTPPY 145
           P  Y +     +++    +PQ    PYS   P  +P   PS     Q   PQ     PPY
Sbjct: 76  PSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPY 135

Query: 146 YNQLVPPPN----LPYLN----------SPTPVSQPELTNLLGID--QQVESNFFGPRAS 189
             Q   PP+     PY +          S  P SQP+  +       QQ   +    +A+
Sbjct: 136 SQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAA 195

Query: 190 YPSVGS-------FARGSFP----VAPGSFSFHESQQGFDGSRSGGLWSDSSKPSERQRS 238
           YP   S       +++  FP    ++  SF    S      S  GG    +     R  S
Sbjct: 196 YPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSS 255

Query: 239 FMPLSPSVPQQPIGSVRSFGP---SAGMASHQQRSLYGFGSSSNP 280
              LS S+   P+G+  +  P   ++G++S Q       G  SNP
Sbjct: 256 LPDLSGSIDDLPMGTEGALSPGVSTSGISSSQ-------GEQSNP 293



 Score = 36.2 bits (82), Expect = 0.27
 Identities = 45/193 (23%), Positives = 68/193 (34%), Gaps = 42/193 (21%)

Query: 110 PQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQPEL 169
           P    G  SP  S         +  +P Q P++P         P+LP +  P+P      
Sbjct: 267 PMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPH------TSPHLPGIRGPSP------ 314

Query: 170 TNLLGIDQQVESNFFGPRASYPSVGSFARGSFPVAPGSFSFHESQQGFDGSRSGGLWSDS 229
                           P  S  SV     G  P++P +   ++        +S  +   S
Sbjct: 315 ---------------SPVGSPASVAQSRSG--PLSPAAVPGNQMPPRPPSGQSDSIMHPS 357

Query: 230 SKPSE--RQRSFMPLSPSVPQ----QPIGSVRSFGPSAG-----MASHQQRSLYGFGSSS 278
              S   + R +M  +P +PQ    QP  ++    PS G     M S+QQ S+  +G   
Sbjct: 358 MNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQG 417

Query: 279 NPYG--RGYLSNP 289
             YG   GY   P
Sbjct: 418 GQYGPQGGYPRQP 430



 Score = 31.2 bits (69), Expect = 8.6
 Identities = 65/291 (22%), Positives = 100/291 (34%), Gaps = 56/291 (19%)

Query: 39   GSFGSGADQP----------LYPPNVYAPQAQAFYYGGFDNGNGEWDEYPSYVNNGGIEI 88
            G+  +GA QP          +Y P+ Y PQ Q              D Y +  +  G   
Sbjct: 915  GNMSTGAPQPNLMPSNPDSGMYSPSRYPPQQQ-------QQQQQRHDSYGNQFSTQGTPS 967

Query: 89   GSPGVYNENQSLVFHSGYGFNPQMPYGPYSPVTSPLPSVGGDAQLYS-PQQFPYTPPYYN 147
            GSP  +   Q+ ++        +   G Y P     P+   + ++YS P       P   
Sbjct: 968  GSP--FPSQQTTMYQQQQQNYKRPMDGTYGP-----PAKRHEGEMYSVPYSTGQGQPQQQ 1020

Query: 148  QLVPPPNLPYLNSPTPVSQPELTNLLGIDQQVESNFFGPRASYPSVGSFARGSFPVAPGS 207
            QL  PP  P   S    +QP         QQ   N +G   +YP+  + A    P A G 
Sbjct: 1021 QL--PPAQPQPASQQQAAQPS-------PQQDVYNQYG--NAYPATATAATERRP-AGGP 1068

Query: 208  FSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQ 267
             +    Q G D          S+ P    +       ++P Q +G     GP    A   
Sbjct: 1069 QNQFPFQFGRD--------RVSAPPGTNAQQ------NMPPQMMG-----GPIQASAEVA 1109

Query: 268  QRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGLSANDRSFLSLENSRRHG 318
            Q+     G +   Y      + GS+  G A  G++  D    + + +   G
Sbjct: 1110 QQGTMWQGRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEG 1160


>S24B_ARATH (Q9M081) Putative protein transport protein Sec24-like
           At4g32640
          Length = 1069

 Score = 38.9 bits (89), Expect = 0.041
 Identities = 63/244 (25%), Positives = 81/244 (32%), Gaps = 36/244 (14%)

Query: 51  PPNVYAPQAQAFYYGGFDNGNGEWDEYPSYVNNGGIEIGSPGVYNENQSLVFHSGYGFNP 110
           PP    P +Q          +G  + YP    N      +    + N+      G G  P
Sbjct: 6   PPGAPRPNSQ--------QNSGPPNFYPGSQGNSNALADNMQNLSLNRPPPMMPGSGPRP 57

Query: 111 QMPYGPY-SPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQPEL 169
             P+G    P     PS G   +  SP   P          PP  +     P PVSQP  
Sbjct: 58  PPPFGQSPQPFPQQSPSYGAPQRGPSPMSRPG---------PPAGMARPGGPPPVSQP-- 106

Query: 170 TNLLGIDQQVESNF-FGPRASYPSVGSFARGSFPVAPGSFSFHESQQGFDGSRSGGLWSD 228
               G    V  N   GP +  PS GS  R S P  P +     S  GF      G  + 
Sbjct: 107 ---AGFQSNVPLNRPTGPPSRQPSFGS--RPSMPGGPVA-QPAASSSGFPAFGPSGSVAA 160

Query: 229 SSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSSSNPYGRGYLSN 288
              P  R  +F   SP     P+GS  S  PS  +           GS   P G  +   
Sbjct: 161 GPPPGSRPMAFG--SP----PPVGSGMSMPPSGMIGGPVSNGHQMVGSGGFPRGTQF--- 211

Query: 289 PGSS 292
           PG++
Sbjct: 212 PGAA 215



 Score = 32.3 bits (72), Expect = 3.9
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 110 PQMPYGPYSPVTSPLPSVGGDAQLYSPQQFP--YTPPYYNQLVPPPNLPYLNSPTPVSQP 167
           P  P+G   P  S LP     AQ+  P  FP    PP Y  + P PN    N PT + QP
Sbjct: 265 PGAPHG--RPAVSGLPYGPPSAQVAPPLGFPGQMQPPRYG-MGPLPNQSMTNIPTAMGQP 321

Query: 168 ELT 170
             T
Sbjct: 322 GAT 324


>KCN3_RAT (P70605) Small conductance calcium-activated potassium
           channel protein 3 (SK3)
          Length = 732

 Score = 38.1 bits (87), Expect = 0.071
 Identities = 57/233 (24%), Positives = 82/233 (34%), Gaps = 11/233 (4%)

Query: 123 PLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQPELTNLLGIDQQVESN 182
           P PS G + Q       P  PP   Q   PP  P L    P  Q +        QQ +  
Sbjct: 22  PCPSSGDEQQQQQQPPPPSAPPAVPQ--QPPG-PLLQPQPPQLQQQQQQQQQQQQQQQQQ 78

Query: 183 FFGPRASYPSVGSFARGSFPVAPGSFSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPL 242
              P    P +      S  V PG    H S   F    S    +    PS RQ S + L
Sbjct: 79  QQAPLHPLPQLAQLQ--SQLVHPG--LLHSSPTAFRAPNSANS-TAILHPSSRQGSQLNL 133

Query: 243 SPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGLS 302
           +  +      S  + GP  G + H+Q S       SNP+    +S+    + G  +  LS
Sbjct: 134 NDHLLGHSPSSTATSGPGGG-SRHRQASPLVHRRDSNPFTEIAMSS--CKYSGGVMKPLS 190

Query: 303 ANDRSFLSLENSRRHGRETASFCRCNGTLDILSEQNRGPRASKLKNHISSENN 355
               S  +L  +   G+    F   N    I+S +        L +H ++ +N
Sbjct: 191 RLSASRRNLIEAEPEGQPLQLFSPSNPPEIIISSREDNHAHQTLLHHPNATHN 243


>TCG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA
           box-binding protein-associated factor 2S) (Transcription
           factor CA150)
          Length = 1098

 Score = 37.7 bits (86), Expect = 0.092
 Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 5/63 (7%)

Query: 110 PQMPYG--PYSPVTSPLPSVGGDAQLYSP---QQFPYTPPYYNQLVPPPNLPYLNSPTPV 164
           P+ P+G  P+ P   P+P  GG      P   Q+ P+ PP  + + PPP + +     PV
Sbjct: 63  PRPPFGRPPFDPNMPPMPPPGGIPPPMGPPHLQRPPFMPPPMSSMPPPPGMMFPPGMPPV 122

Query: 165 SQP 167
           + P
Sbjct: 123 TAP 125


>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)
          Length = 875

 Score = 37.0 bits (84), Expect = 0.16
 Identities = 26/71 (36%), Positives = 28/71 (38%), Gaps = 5/71 (7%)

Query: 110 PQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQPEL 169
           P  PYG Y P   P P      Q   PQQ P  PP   Q  P P  P    P P   P  
Sbjct: 91  PFYPYGQYWPQQPPQPPPDQPQQPQPPQQPPQQPP---QQQPQPPQPPQQPPQPPQPP-- 145

Query: 170 TNLLGIDQQVE 180
              L + QQ+E
Sbjct: 146 PQQLALVQQIE 156


>TBP_DROME (P20227) TATA-box binding protein (TATA-box factor) (TATA
           binding factor) (TATA sequence-binding protein)
           (Transcription initiation factor TFIID TBP subunit)
          Length = 353

 Score = 36.6 bits (83), Expect = 0.21
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 24/160 (15%)

Query: 153 PNLPYLNSPTPVSQPELTNLLGIDQQVESN--FFGPRASYPSVGSFARGSFPVAPGSFSF 210
           PN    +  TP+ Q E       DQQ+ +N  +  P  S P        S   APGS S 
Sbjct: 7   PNFSIPSIGTPLHQMEA------DQQIVANPVYHPPAVSQPD-------SLMPAPGSSSV 53

Query: 211 HESQQGFDGSRSGGLWSDSSKPS-----ERQRSFMPLSPSVPQQPIGSVRSFGPSAG--- 262
              QQ      SGG      +PS     ++ +S+ P +    QQ    ++S  P  G   
Sbjct: 54  QHQQQQQQSDASGGSGLFGHEPSLPLAHKQMQSYQPSASYQQQQQQQQLQSQAPGGGGST 113

Query: 263 -MASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGL 301
             +  Q ++     +   P     +   G+  GG A+S +
Sbjct: 114 PQSMMQPQTPQSMMAHMMPMSERSVGGSGAGGGGDALSNI 153


>HORN_HUMAN (Q86YZ3) Hornerin
          Length = 2850

 Score = 36.6 bits (83), Expect = 0.21
 Identities = 36/95 (37%), Positives = 40/95 (41%), Gaps = 11/95 (11%)

Query: 206 GSFSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPS-AGMA 264
           GS S H S  G  GSRSG      S   ER RS    S S  Q   GS +S G    G  
Sbjct: 248 GSGSGHSSGYGQHGSRSG-----QSSRGERHRSSSGSSSSYGQHGSGSRQSLGHGRQGSG 302

Query: 265 SHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAIS 299
           S Q  S    GS     G G+ S+ G    GS+ S
Sbjct: 303 SRQSPSHVRHGS-----GSGHSSSHGQHGSGSSYS 332



 Score = 36.2 bits (82), Expect = 0.27
 Identities = 50/181 (27%), Positives = 68/181 (36%), Gaps = 21/181 (11%)

Query: 206  GSFSFHESQQGFDGSRSGGLWSDSSKPSERQR-SFMPLSPSVPQQPIGSVRS-------- 256
            GS S   S  G  GS SG        P   QR S    SPS  +   GS RS        
Sbjct: 1576 GSGSSQSSGYGRQGSGSG------QSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGS 1629

Query: 257  -FGPSAGMASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGLSANDRSFLSLENSR 315
              G S+G   H+  S  G  SS + +G G   + G    GS     S  +R   S  +S 
Sbjct: 1630 GLGESSGFGHHESSS--GQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSRSSS 1687

Query: 316  RHGRETASFCRCNGTLDILSEQNRGP---RASKLKNHISSENNAIDGSKNNASTAKFQDE 372
            R+G+  +   + +G     S   + P   R      H SS      GS  ++S   ++  
Sbjct: 1688 RYGQHGSGSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYESR 1747

Query: 373  S 373
            S
Sbjct: 1748 S 1748



 Score = 35.8 bits (81), Expect = 0.35
 Identities = 35/105 (33%), Positives = 39/105 (36%), Gaps = 16/105 (15%)

Query: 206 GSFSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFG------- 258
           GS S H S  G  GSRSG      S   ERQ S    S S  Q   GS +S G       
Sbjct: 482 GSGSGHSSGHGQHGSRSG-----QSSRGERQGSSAGSSSSYGQHGSGSRQSLGHSRHGSG 536

Query: 259 ----PSAGMASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAIS 299
               PS     H+  S        + YG G  S+ G    GS  S
Sbjct: 537 SGQSPSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYESGSGHS 581



 Score = 32.3 bits (72), Expect = 3.9
 Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 206 GSFSFHESQQGFDGSRSGGLWSDSSK-PSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMA 264
           GS S H S QG  GS SG   S      S RQ S      S  +   G  +    S    
Sbjct: 365 GSGSGHSSSQGQHGSTSGQASSSGQHGSSSRQSSSYGQHESASRHSSGRGQHSSGSGQSP 424

Query: 265 SHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISG 300
            H QR   G GS  +P         G+ FG S+ SG
Sbjct: 425 GHGQR---GSGSGQSPSS----GQHGTGFGRSSSSG 453


>SIL1_MOUSE (Q8C0T5) Signal-induced proliferation-associated 1 like
            protein 1
          Length = 1782

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 65/305 (21%), Positives = 111/305 (36%), Gaps = 46/305 (15%)

Query: 80   YVNNGGIEIGSPGVYNENQSLVFHSGYG-FNPQMPYGPYSPVTSPLPSVGGDAQLYSPQQ 138
            Y  N GI       +  N     ++  G  +PQ+P    SP+TS L +  GD ++  P++
Sbjct: 1048 YQMNEGISYEFKFPFRNNNKWQRNASKGAHSPQVPSQLQSPMTSRLNAGKGDGKMPPPER 1107

Query: 139  FPYTP--------PYYNQLVPPPNLPYLNSPTPVSQPELTNLLGIDQQVESNFFGPRASY 190
                P        P   +L P  ++    S   +++ +  N         SN      + 
Sbjct: 1108 AANIPRSISSDGRPLERRLSPGSDIYVTVSSMALARSQCRN-------SPSNLSSSSETG 1160

Query: 191  PSVGSFARGSFPV-------APGSFSFHESQQGFDGS--------RSGGLWSDSSKPSER 235
               G++ + S P        +P S     +Q    GS        RS    +D  +P+  
Sbjct: 1161 SGGGTYRQKSMPEGFGVSRRSPASIDRQNTQSDISGSGKSTPSWQRSEDSLADQMEPTCH 1220

Query: 236  QRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGG 295
              +   + P+  + P G +    P   ++ ++Q      G S + Y     SN  SS   
Sbjct: 1221 LPAVSKVLPAFRESPSGRLMRQDPVVHLSPNKQ------GHSDSHYSSHSSSNTLSSNAS 1274

Query: 296  SAISGLS--ANDRSFLSLEN-------SRRHGRETASFCRCNGTLDILSEQNRGPRASKL 346
            SA S       DR+   L +       S   G +TAS+   +G+   L      PR+   
Sbjct: 1275 SAHSDEKWYDGDRTESDLNSYNYLQGTSADSGIDTASYGPSHGSTASLGASTSSPRSGPG 1334

Query: 347  KNHIS 351
            K  ++
Sbjct: 1335 KEKVA 1339


>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6)
          Length = 1887

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 40/155 (25%), Positives = 61/155 (38%), Gaps = 14/155 (9%)

Query: 13   PESSKFSNSSQG--TTTIGHSRDITSQSGSFGSGADQPLYPP-NVYAPQAQAFYYGGFDN 69
            P+S+ +S SS G   T+  +S  +  QS    +G+   +Y P N Y+P +  +      N
Sbjct: 1626 PQSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYS----PN 1681

Query: 70   GNGEWDEYPSYVNNGGIEIGSPGVYNENQSLVFHSGYGFNPQMP-YGPYSPVTSPLPSVG 128
                    PSY  +      +   Y+        +   + P  P Y P SP  S  P   
Sbjct: 1682 SPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYS 1741

Query: 129  GDAQLYSPQQFPYTP--PYYNQLVPPPNLPYLNSP 161
              +  YS     Y+P  P Y+    PP+  Y  SP
Sbjct: 1742 PASPAYSQTGVKYSPTSPTYS----PPSPSYDGSP 1772


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.313    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,962,204
Number of Sequences: 164201
Number of extensions: 4021283
Number of successful extensions: 8672
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 8421
Number of HSP's gapped (non-prelim): 311
length of query: 632
length of database: 59,974,054
effective HSP length: 116
effective length of query: 516
effective length of database: 40,926,738
effective search space: 21118196808
effective search space used: 21118196808
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)