BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144517.14 - phase: 0 /pseudo
(56 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PG24_MYCTU (Q10637) Hypothetical PE-PGRS family protein PE_PGRS2... 35 0.028
WA22_MYCTU (O06794) WAG22 antigen precursor 32 0.24
LPC4_RAT (Q05704) Long palate, lung and nasal epithelium carcino... 32 0.41
LPC4_HUMAN (P59827) Long palate, lung and nasal epithelium carci... 32 0.41
SYH_AERPE (Q9YEB2) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 31 0.70
PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS1... 31 0.70
PG03_MYCTU (P56877) Hypothetical PE-PGRS family protein PE_PGRS3... 31 0.70
PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS5... 30 0.92
PG34_MYCTU (Q50594) Hypothetical PE-PGRS family protein PE_PGRS34 29 2.7
PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33 29 2.7
PG46_MYCTU (P71933) Hypothetical PE-PGRS family protein PE_PGRS46 28 3.5
PG20_MYCTU (O53416) Hypothetical PE-PGRS family protein PE_PGRS20 28 3.5
DSG1_HUMAN (Q02413) Desmoglein 1 precursor (Desmosomal glycoprot... 28 3.5
PG44_MYCTU (Q50630) Hypothetical PE-PGRS family protein PE_PGRS44 28 4.5
PG36_MYCTU (Q10707) Hypothetical PE-PGRS family protein PE_PGRS36 28 4.5
CODY_STRA5 (P63847) GTP-sensing transcriptional pleiotropic repr... 28 4.5
CODY_STRA3 (P63846) GTP-sensing transcriptional pleiotropic repr... 28 4.5
GRP_ARATH (P27483) Glycine-rich cell wall structural protein pre... 28 5.9
THBG_SHEEP (P50450) Thyroxine-binding globulin precursor (T4-bin... 27 7.8
TBP1_WHEAT (P26356) TATA-box binding protein 1 (TATA-box factor ... 27 7.8
>PG24_MYCTU (Q10637) Hypothetical PE-PGRS family protein PE_PGRS24
precursor
Length = 603
Score = 35.4 bits (80), Expect = 0.028
Identities = 22/49 (44%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGR 55
G G G TAG+GG G G+ G G+GG LGI G GNGG+
Sbjct: 485 GAGGAGGFGETAGDGGA--GGNAGLLNGDGGAGGAGGLGIAGDGGNGGK 531
Score = 30.4 bits (67), Expect = 0.92
Identities = 18/48 (37%), Positives = 27/48 (55%), Gaps = 2/48 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G+ G G+ GNGG +G VG G+ G+GG + G+ G+ G+ G
Sbjct: 556 GVGGSGGNATLIGNGGNGGNGGVGSAPGKGGAGG--TAGLLGLNGSPG 601
Score = 28.9 bits (63), Expect = 2.7
Identities = 18/53 (33%), Positives = 23/53 (42%), Gaps = 6/53 (11%)
Query: 8 IEGRFGSEVTAGNGGMLRDGIVG------IFVGRLGSGGIVSLGIEGIVGNGG 54
+ G GS T G GG++ DG G I G +G G G+ G GG
Sbjct: 433 VRGAAGSGGTGGTGGLIGDGGAGGAGGTGIEFGSVGGAGGAGGNAAGLSGAGG 485
Score = 28.5 bits (62), Expect = 3.5
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 7 GIEGRFGSEVTAG-NGGMLRDGIVGIFVGRLGSGGI--VSLGIEGIVGNGG 54
G G FG +AG NGG DG GIF G G+GG G + + G GG
Sbjct: 287 GGAGGFGVSGSAGGNGGTGGDG--GIFTGNGGTGGTGGTGTGNQLVGGEGG 335
Score = 27.3 bits (59), Expect = 7.8
Identities = 16/48 (33%), Positives = 18/48 (37%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G G V G GG G G G+GG G+ G G G
Sbjct: 255 GAGGTGGLSVNGGTGGTGGTGGGGGLFSNGGAGGAGGFGVSGSAGGNG 302
>WA22_MYCTU (O06794) WAG22 antigen precursor
Length = 914
Score = 32.3 bits (72), Expect = 0.24
Identities = 21/51 (41%), Positives = 23/51 (44%), Gaps = 2/51 (3%)
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIE--GIVGNGG 54
+G G FG T G GG DG G G G GG G+ G GNGG
Sbjct: 288 MGGAGGFGDHGTLGTGGAGGDGGGGGLFGAGGDGGAGGSGLTTGGAAGNGG 338
Score = 29.6 bits (65), Expect = 1.6
Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 5/48 (10%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI--VSLGIEG 48
G G+ G G+ V GNGG +G +G G+ G GG + LG +G
Sbjct: 454 GGTGGVGGAGGNAVLIGNGG---EGGIGALAGKSGFGGFGGLLLGADG 498
Score = 28.9 bits (63), Expect = 2.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G GS ++ G G G+F G G+GG + G G+GG
Sbjct: 764 GAGGSGGSSLSGKAGAGGAGGSAGLFYGSGGAGGNGGYSLNGTGGDGG 811
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G+ G G T G GG G G+F G G GG G G +G GG
Sbjct: 260 GVGGAGGQGHTGGAGGA--GGAGGLF-GAGGMGGAGGFGDHGTLGTGG 304
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G G+ +AG G G GI G G+GG +G G G GG
Sbjct: 559 GGAGAAGTNGSAGGAG----GAGGILFGTGGAGGAGGVGTAGAGGAGG 602
>LPC4_RAT (Q05704) Long palate, lung and nasal epithelium
carcinoma associated protein 4 (Potential
ligand-binding protein RY2G5) (Fragment)
Length = 470
Score = 31.6 bits (70), Expect = 0.41
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVG 51
EG + G G G G+GG+L G V +G LG GGI+S ++GI G
Sbjct: 36 EGILAGQGGLLGGGGLLGDGGLLGGGGV---LGVLGEGGILST-VQGITG 81
>LPC4_HUMAN (P59827) Long palate, lung and nasal epithelium
carcinoma associated protein 4 (RY2G5)
Length = 575
Score = 31.6 bits (70), Expect = 0.41
Identities = 21/46 (45%), Positives = 25/46 (53%), Gaps = 3/46 (6%)
Query: 10 GRFGSEVTAGNGGMLR-DGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G G GGML DGI+ G LG GG+ LG G++G GG
Sbjct: 125 GAVGPGGLLGTGGMLAADGILAGQGGLLGGGGL--LGDGGLLGGGG 168
>SYH_AERPE (Q9YEB2) Histidyl-tRNA synthetase (EC 6.1.1.21)
(Histidine--tRNA ligase) (HisRS)
Length = 438
Score = 30.8 bits (68), Expect = 0.70
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 4 KVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
+VV E R GS GG DG+VG+F GR VS+GIE I+ G
Sbjct: 285 EVVLDEPRIGSVA----GGGRYDGLVGMFAGRDIPATGVSIGIERIIDAG 330
>PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS10
precursor
Length = 801
Score = 30.8 bits (68), Expect = 0.70
Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 4/52 (7%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI----VSLGIEGIVGNGG 54
G G G+ G+GG G G+ +G G+GG +LG GI G GG
Sbjct: 316 GNGGNGGASTGGGDGGPGGAGGTGVLIGNGGNGGSGGTGATLGKAGIGGTGG 367
Score = 28.9 bits (63), Expect = 2.7
Identities = 18/44 (40%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI--VSLGIEG 48
G G G+ V GNGG G G +G+ G GG V LG++G
Sbjct: 331 GPGGAGGTGVLIGNGGNGGSGGTGATLGKAGIGGTGGVLLGLDG 374
Score = 28.1 bits (61), Expect = 4.5
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFV--GRLGSGGIVSL----GIEGIVGNGGRF 56
G G G+ GNGG +G G+F G G GG S GI G GNGG F
Sbjct: 519 GAGGAGGAGAVGGNGGAGGNG--GLFANGGAGGPGGFGSPAGAGGIGGAGGNGGLF 572
Score = 27.7 bits (60), Expect = 5.9
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVS--LGIEGIVGNGG 54
GI G G+ + G+GG G G G G+GG LG G G GG
Sbjct: 476 GIGGAGGAALLFGSGGAGGSGGAGAVGGNGGAGGNAGALLGAAGAGGAGG 525
Score = 27.3 bits (59), Expect = 7.8
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 7 GIEGRFGSEVTAGN-GGMLRDGIVGIF----VGRLGSGGIVSLGIEGIVGNGGRF 56
G G FGS AG GG +G G+F G G G ++ G G GNGG F
Sbjct: 548 GGPGGFGSPAGAGGIGGAGGNG--GLFGAGGTGGAGGGSTLAGGAGGAGGNGGLF 600
>PG03_MYCTU (P56877) Hypothetical PE-PGRS family protein PE_PGRS3
precursor
Length = 957
Score = 30.8 bits (68), Expect = 0.70
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 5/48 (10%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G+ G G GNGG +G G +G G+GG + GI G+GG
Sbjct: 148 GVNGGAG-----GNGGAGGNGGAGGLIGNGGAGGAGGVASSGIGGSGG 190
Score = 30.4 bits (67), Expect = 0.92
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 6/48 (12%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G G+ G GG++ +G G G+GG+ S GI G G GG
Sbjct: 152 GAGGNGGAGGNGGAGGLIGNGGAG------GAGGVASSGIGGSGGAGG 193
Score = 30.4 bits (67), Expect = 0.92
Identities = 21/52 (40%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G G FG+ T G+GG D G G G+GG+ G EG G+GG
Sbjct: 279 GGAGGAGGLFGAGGTGGHGG-FADSSFGGVGGAGGAGGLFGAGGEG--GSGG 327
Score = 30.0 bits (66), Expect = 1.2
Identities = 18/41 (43%), Positives = 23/41 (55%), Gaps = 4/41 (9%)
Query: 14 SEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
S VT GNGG+ G G+ +G G+GG +G G G GG
Sbjct: 452 SAVTGGNGGI---GGTGVLIGNGGNGGSGGIG-AGKAGVGG 488
Score = 29.3 bits (64), Expect = 2.0
Identities = 21/64 (32%), Positives = 25/64 (38%), Gaps = 12/64 (18%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSG------------GIVSLGIEGIV 50
G G FG+ GNGG+ G G G GSG G++SLG G
Sbjct: 721 GGTGGAGTNFGAGGNGGNGGLFGAGGTGGAAGSGGSGITTGGGGHGGNAGLLSLGASGGA 780
Query: 51 GNGG 54
G G
Sbjct: 781 GGSG 784
Score = 29.3 bits (64), Expect = 2.0
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 GNGGMLRDGIVGIFVGRLGSGGI-VSLGIEGIVGNGG 54
GNGG G G+ G G+GG + G G++GNGG
Sbjct: 137 GNGGAGGSGAAGVNGGAGGNGGAGGNGGAGGLIGNGG 173
Score = 27.7 bits (60), Expect = 5.9
Identities = 17/39 (43%), Positives = 22/39 (55%), Gaps = 2/39 (5%)
Query: 19 GNGGMLRDGIVGIFVGRLGSGGIV--SLGIEGIVGNGGR 55
G GG G V + +G G+GG S+G+ GI G GGR
Sbjct: 620 GIGGAGGAGGVSLLIGSGGTGGNGGNSIGVAGIGGAGGR 658
Score = 27.3 bits (59), Expect = 7.8
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Query: 12 FGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
FG+ G GG +G G G+GG+ + G G+ G+GG
Sbjct: 231 FGAAGVGGAGGFTNGSALGGAGGAGGAGGLFATG--GVGGSGG 271
>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54
precursor
Length = 1901
Score = 30.4 bits (67), Expect = 0.92
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI----VSLGIEGIVGNGG 54
G G+ G G+ GNGG +G G F G G+GG+ G +G GNGG
Sbjct: 1840 GSATGV-GNGGNGGDGGNGGDGGNGAPGGFGGGAGAGGLGGSGAGGGTDGDDGNGG 1894
Score = 30.4 bits (67), Expect = 0.92
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 13 GSEVTAGNGGMLRDGIVGIFVGRLGSGGIV-SLGIEGIVGNGG 54
G+ T G GG G G +G G+GG V S+G GI G GG
Sbjct: 638 GAGGTGGTGGAAGAGGAGGAIGTGGTGGAVGSVGNAGIGGTGG 680
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (49%), Gaps = 3/48 (6%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G +G G+ NGG+ DG G G G+GG +G+ G+GG
Sbjct: 849 GGDGATGAAGLGDNGGVGGDGGAG---GAAGNGGNAGVGLTAKAGDGG 893
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (49%), Gaps = 3/48 (6%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G +G G+ NGG+ DG G G G+GG +G+ G+GG
Sbjct: 1050 GGDGATGAAGLGDNGGVGGDGGAG---GAAGNGGNAGVGLTAKAGDGG 1094
Score = 28.9 bits (63), Expect = 2.7
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G G+ G GG DG++G G G GG+ G+ G+ G GG
Sbjct: 322 GQGGLGGAGGQGGTGGAGGDGVLGGVGGTGGKGGVG--GVAGLGGAGG 367
Score = 27.7 bits (60), Expect = 5.9
Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 4/53 (7%)
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
+G G+ G + + A NGG +G G G+ G+GG +LG+ G G GG
Sbjct: 924 QGGQGGLGGASTTSINA-NGGAGGNGGTG---GKGGAGGAGTLGVGGSGGTGG 972
Score = 27.7 bits (60), Expect = 5.9
Identities = 17/38 (44%), Positives = 20/38 (51%), Gaps = 1/38 (2%)
Query: 19 GNGGMLRDGIVGIFVGRLGSGGIV-SLGIEGIVGNGGR 55
G GG G G G G+GG+V + G GI G GGR
Sbjct: 762 GTGGAAGAGGAGGATGTGGTGGVVGATGSAGIGGAGGR 799
Score = 27.7 bits (60), Expect = 5.9
Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 4/53 (7%)
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
+G G+ G + + A NGG +G G G+ G+GG +LG+ G G GG
Sbjct: 1125 QGGQGGLGGASTTSINA-NGGAGGNGGTG---GKGGAGGAGTLGVGGSGGTGG 1173
Score = 27.3 bits (59), Expect = 7.8
Identities = 22/60 (36%), Positives = 24/60 (39%), Gaps = 8/60 (13%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLG--------SGGIVSLGIEGIVGNGG 54
G VVG G G G GG DG G+ +G G G S G GI G GG
Sbjct: 782 GGVVGATGSAGIGGAGGRGGDGGDGASGLGLGLSGFDGGQGGQGGAGGSAGAGGINGAGG 841
>PG34_MYCTU (Q50594) Hypothetical PE-PGRS family protein PE_PGRS34
Length = 515
Score = 28.9 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 22/43 (50%)
Query: 12 FGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
+G+ GNGG+ + G G G +G+GG +G G G G
Sbjct: 133 YGNGGNGGNGGIGQPGGAGGDAGLIGNGGNGGIGGPGATGLAG 175
Score = 27.3 bits (59), Expect = 7.8
Identities = 18/43 (41%), Positives = 21/43 (47%), Gaps = 1/43 (2%)
Query: 12 FGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
F T GN GM DG G F G+GG G ++GNGG
Sbjct: 316 FSDGGTGGNAGMFGDGGNGGFSFFDGNGGDGGTG-GTLIGNGG 357
>PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33
Length = 498
Score = 28.9 bits (63), Expect = 2.7
Identities = 22/54 (40%), Positives = 26/54 (47%), Gaps = 8/54 (14%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI------VSLGIEGIVGNGG 54
G G G AG+GG DG G+F G G+GG V+ G G GNGG
Sbjct: 230 GAGGVGGLAADAGDGGAGGDG--GLFFGVGGAGGAGGTGTNVTGGAGGAGGNGG 281
Score = 27.3 bits (59), Expect = 7.8
Identities = 22/67 (32%), Positives = 28/67 (40%), Gaps = 14/67 (20%)
Query: 1 MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIV-------------SLGIE 47
M G G G FG+ G GG + G G F G G+GG++ G+
Sbjct: 152 MPGGNGGAAGLFGNGGAGGAGGNVASGTAG-FGGAGGAGGLLYGAGGAGGAGGRAGGGVG 210
Query: 48 GIVGNGG 54
GI G GG
Sbjct: 211 GIGGAGG 217
>PG46_MYCTU (P71933) Hypothetical PE-PGRS family protein PE_PGRS46
Length = 778
Score = 28.5 bits (62), Expect = 3.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G+ G FG+ G GG+ G VG G+GG +G +G G G
Sbjct: 249 GVGGVFGNGGFGGAGGLGAAGGVGGAASYFGTGGGGGVGGDGAPGGDG 296
Score = 27.7 bits (60), Expect = 5.9
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG-IEGIVGNGG 54
G V G G GS GNGG ++G+ G G+GG+ G I GI G GG
Sbjct: 599 GGVGGTGGMGGSGGVGGNGGAA-GSLIGLGGGG-GAGGVGGTGGIGGIGGAGG 649
>PG20_MYCTU (O53416) Hypothetical PE-PGRS family protein PE_PGRS20
Length = 463
Score = 28.5 bits (62), Expect = 3.5
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEG----IVGNGG 54
G G GS + G GG +G +G G G+GG G +G ++GNGG
Sbjct: 374 GTAGLLGSGGSGGTGGDGGNGGLGAGSGAKGNGGNGGDGGKGGDAQLIGNGG 425
Score = 27.3 bits (59), Expect = 7.8
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
G G+ AGNGG G G G+GG +G G G GG F
Sbjct: 306 GNGGQGADTGNAGNGG--HGGSAAKLFGDGGAGGAGGMGSTGGTGGGGGF 353
>DSG1_HUMAN (Q02413) Desmoglein 1 precursor (Desmosomal glycoprotein
1) (DG1) (DGI) (Pemphigus foliaceus antigen)
Length = 1049
Score = 28.5 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG 45
+G G G+ + AG+G + GI G +G GG S+G
Sbjct: 974 IGSSGLVGTSMGAGSGALSGAGISGGGIGLSSLGGTASIG 1013
>PG44_MYCTU (Q50630) Hypothetical PE-PGRS family protein PE_PGRS44
Length = 543
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 13 GSEVTAGNGGMLRDGIVGIFVGRLGSGGI------VSLGIEGIVGNGGR 55
GS T G GG G I +G G GGI V G+ G+ G GG+
Sbjct: 388 GSNGTGGAGGAGGTGATLIGLGAGGGGGIGGFAVNVGNGVGGLGGQGGQ 436
>PG36_MYCTU (Q10707) Hypothetical PE-PGRS family protein PE_PGRS36
Length = 491
Score = 28.1 bits (61), Expect = 4.5
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEG--IVGNGG 54
+G + G G G GNGG G G G GSGG G G + GNGG
Sbjct: 215 DGGLGGRAGLIGHGGAGGNGGDGGHGGSGKAGGSGGSGGFGQFGGAGGLLYGNGG 269
>CODY_STRA5 (P63847) GTP-sensing transcriptional pleiotropic
repressor codY
Length = 261
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/49 (38%), Positives = 29/49 (58%), Gaps = 4/49 (8%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIV---SLGIEG 48
G++ G+EGR + V A G+ R IV + +L S GI+ SLG++G
Sbjct: 196 GELDGLEGRLTASVIADRIGITRSVIVNA-LRKLESAGIIESRSLGMKG 243
>CODY_STRA3 (P63846) GTP-sensing transcriptional pleiotropic
repressor codY
Length = 261
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/49 (38%), Positives = 29/49 (58%), Gaps = 4/49 (8%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIV---SLGIEG 48
G++ G+EGR + V A G+ R IV + +L S GI+ SLG++G
Sbjct: 196 GELDGLEGRLTASVIADRIGITRSVIVNA-LRKLESAGIIESRSLGMKG 243
>GRP_ARATH (P27483) Glycine-rich cell wall structural protein
precursor
Length = 349
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
G G G G+GG L GI G G G GG + G G +G G
Sbjct: 124 GHGGGIGGGAGGGSGGGLGGGIGGGAGGGAGGGGGLGGGHGGGIGGG 170
>THBG_SHEEP (P50450) Thyroxine-binding globulin precursor
(T4-binding globulin)
Length = 412
Score = 27.3 bits (59), Expect = 7.8
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG 45
EG++ G+EG S++ +L+ G V +FV + LG
Sbjct: 273 EGQMEGVEGAMSSKILKKWNRLLQKGWVNLFVPKFSISATYDLG 316
>TBP1_WHEAT (P26356) TATA-box binding protein 1 (TATA-box factor
1) (TATA binding factor 1) (TATA sequence-binding
protein 1) (TBP-1) (Transcription initiation factor
TFIID TBP-1 subunit)
Length = 233
Score = 27.3 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 20 NGGMLRDGIVGIFVGRLGSGGIVSLGIEGI 49
+GG G+VG VGR G GG V G + +
Sbjct: 16 SGGASGSGVVGGGVGRAGGGGAVMEGAQPV 45
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.152 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,799,987
Number of Sequences: 164201
Number of extensions: 310563
Number of successful extensions: 1114
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 200
length of query: 56
length of database: 59,974,054
effective HSP length: 32
effective length of query: 24
effective length of database: 54,719,622
effective search space: 1313270928
effective search space used: 1313270928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC144517.14