BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144516.7 - phase: 0
(261 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KDD1_STRAW (Q829P9) Probable 5-dehydro-4-deoxyglucarate dehydrat... 33 0.70
HUTU_TRIRP (P53385) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 33 0.91
CYRB_MOUSE (P26955) Cytokine receptor common beta chain precurso... 32 1.2
LAP1_HUMAN (Q96NW7) LAP1 protein (Densin-180) 31 2.6
TSN2_MOUSE (Q922J6) Tetraspanin 2 (Tspan-2) 31 3.5
HUTU_AGRT5 (Q8U8Z9) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 30 4.5
LAP1_RAT (P70587) LAP1 protein (Densin-180) 30 5.9
CSTA_BACSU (P94532) Carbon starvation protein A homolog 30 5.9
VPG_BYDV1 (P29046) Putative genome-linked protein precursor (VPG... 30 7.7
S1A6_RAT (Q9QYE2) Solute carrier organic anion transporter famil... 30 7.7
LAP1_MOUSE (Q80TE7) LAP1 protein (Densin-180) 30 7.7
HUTU_CAUCR (Q9A9M1) Urocanate hydratase (EC 4.2.1.49) (Urocanase... 30 7.7
>KDD1_STRAW (Q829P9) Probable 5-dehydro-4-deoxyglucarate dehydratase
1 (EC 4.2.1.41) (5-keto-4-deoxy-glucarate dehydratase 1)
(KDGDH 1)
Length = 313
Score = 33.1 bits (74), Expect = 0.70
Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 1/160 (0%)
Query: 24 LAIVGYGIYLLVAFAKASDDDKPD-ISPTPDISPVSGDSALIQFGRPMLMAVSLSDNIFD 82
+A GYG L V FA+ + D D + P V+G L++ R + A SL ++
Sbjct: 85 VAGAGYGTALAVRFARLAQDAGADGLLAMPPYLVVAGQEGLLRHYRELAAATSLETIVYQ 144
Query: 83 KLPKAWFIYLFIGVGAVLFVVSCFGCIAFLFFDKSWKEEIPTDKTGDFDMIYGFLRENWD 142
+ + + + ++ + L + + T+ GDF G
Sbjct: 145 RDNAVFTPEAVVELARTDGIIGFKDGLGDLDLMQRVVSAVRTEVPGDFLYFNGLPTAELT 204
Query: 143 IVRWVALGIVIFEALLFLLALIVRAVNRPADYDSDDELIN 182
+ + +GI ++ + +F A + A DD +N
Sbjct: 205 GLAYRGIGITLYSSAVFCFAPEIALAFHKALNSGDDATVN 244
>HUTU_TRIRP (P53385) Urocanate hydratase (EC 4.2.1.49) (Urocanase)
(Imidazolonepropionate hydrolase)
Length = 564
Score = 32.7 bits (73), Expect = 0.91
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 119 KEEIPTDKTGDFDMIYGFLRENWDIVRW 146
K +I TD+T D I G+L WD+ RW
Sbjct: 262 KPDIVTDQTSAHDPINGYLPAGWDLARW 289
>CYRB_MOUSE (P26955) Cytokine receptor common beta chain precursor
(CDw131 antigen) (GM-CSF/IL-3/IL-5 receptor common
beta-chain)
Length = 896
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 41 SDDDKPDISPTPDISPVSGDSALIQFGRPMLMAVSLSDNIFDK------------LPKAW 88
S + D + + D+S + D++ R + +S D I+ K +P W
Sbjct: 390 SKTENLDRAHSMDLSQLEPDTSYC--ARVRVKPISNYDGIWSKWSEEYTWKTDWVMPTLW 447
Query: 89 FIYLFIGVGAVLFVVSCFGCIAFLFFDKSWKEEIP 123
+ + + + L ++ FGC++ + WKE+IP
Sbjct: 448 IVLILVFLILTLLLILRFGCVSVYRTYRKWKEKIP 482
>LAP1_HUMAN (Q96NW7) LAP1 protein (Densin-180)
Length = 1537
Score = 31.2 bits (69), Expect = 2.6
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 13/81 (16%)
Query: 183 PRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPNR---NDAWSTRMREKYGLDTSEFTYNPS 239
P+ +PLL+ R+A PP +P QRP+R +D ++ + D + F +
Sbjct: 731 PQPLDSKPLLSQREAVPPGNIP------QRPDRLPMSDTFTDNWTDGSHYDNTGFV---A 781
Query: 240 ESQRFQQANSQP-TEEKSRCT 259
E + ANS P KSR T
Sbjct: 782 EETTAENANSNPLLSSKSRST 802
>TSN2_MOUSE (Q922J6) Tetraspanin 2 (Tspan-2)
Length = 221
Score = 30.8 bits (68), Expect = 3.5
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 61 SALIQFGRPMLMAVSLSD-NIFDKLPKAWFI--YLFIGVGAVLFVVSCFGC 108
SA+I FG ++ D + DK P+ +++ Y+ +G GA++ V FGC
Sbjct: 27 SAVIAFGLWFRFGGTMKDLSSEDKSPEYFYVGLYVLVGAGALMMTVGFFGC 77
>HUTU_AGRT5 (Q8U8Z9) Urocanate hydratase (EC 4.2.1.49) (Urocanase)
(Imidazolonepropionate hydrolase)
Length = 557
Score = 30.4 bits (67), Expect = 4.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 114 FDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVA 148
F + + +I TD+T D I+G+L W + W A
Sbjct: 251 FRRGVRPDIVTDQTSAHDPIHGYLPAGWTVAEWRA 285
>LAP1_RAT (P70587) LAP1 protein (Densin-180)
Length = 1495
Score = 30.0 bits (66), Expect = 5.9
Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 12/72 (16%)
Query: 183 PRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPNR---NDAWSTRMREKYGLDTSEFTYNPS 239
P+ +PLL R+A PP LP QRP+R +DA+ + D + F S
Sbjct: 736 PQPLDAKPLLTQREAVPPGNLP------QRPDRLPMSDAFPDNWTDGSHYDNTGFV---S 786
Query: 240 ESQRFQQANSQP 251
E + AN+ P
Sbjct: 787 EEATGENANNNP 798
>CSTA_BACSU (P94532) Carbon starvation protein A homolog
Length = 598
Score = 30.0 bits (66), Expect = 5.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 141 WDIVRWVALGIVIFEALLFLLALIVRAVNRPADY 174
W ++ VA G ++ E L+ ++ALI +PADY
Sbjct: 323 WSDMKPVAFGAMLVECLVGIMALIAATALQPADY 356
>VPG_BYDV1 (P29046) Putative genome-linked protein precursor (VPG)
(17 kDa protein)
Length = 154
Score = 29.6 bits (65), Expect = 7.7
Identities = 19/95 (20%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 169 NRPADYDSDDELINPRQQVRQPLLNNRQAGPPSGLPVAGTTDQRP--NRNDAWSTRMREK 226
+ P + D +DEL++ +++ Q L ++QAG + T P + + R ++
Sbjct: 18 SNPIEPDQNDELVDAQEEEGQILYLDQQAGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQR 77
Query: 227 YGLD-TSEFTYNPSESQRFQQANSQPTEEKSRCTI 260
+ ++ +S T+ S++ R ++++P + ++C +
Sbjct: 78 FQVEYSSPTTFTRSQTSRLSLSHTRPPLQSAQCLL 112
>S1A6_RAT (Q9QYE2) Solute carrier organic anion transporter family
member 1A6 (Solute carrier family 21 member 13)
(Kidney-specific organic anion transporting polypeptide
5) (OATP-5)
Length = 670
Score = 29.6 bits (65), Expect = 7.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 4 CRGFWECLLKLLNFILTVTGLAIVG 28
C G ECLL L NF+LT + I G
Sbjct: 393 CLGMSECLLSLCNFMLTCDNVPIAG 417
>LAP1_MOUSE (Q80TE7) LAP1 protein (Densin-180)
Length = 1490
Score = 29.6 bits (65), Expect = 7.7
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 12/72 (16%)
Query: 183 PRQQVRQPLLNNRQAGPPSGLPVAGTTDQRPNR---NDAWSTRMREKYGLDTSEFTYNPS 239
P+ +PLL+ R+A PP +P QRP+R +DA+ + D + F S
Sbjct: 731 PQPLDAKPLLSQREAVPPGNIP------QRPDRLPMSDAFPDNWTDGSHYDNTGFV---S 781
Query: 240 ESQRFQQANSQP 251
E + AN+ P
Sbjct: 782 EEAAGENANNNP 793
>HUTU_CAUCR (Q9A9M1) Urocanate hydratase (EC 4.2.1.49) (Urocanase)
(Imidazolonepropionate hydrolase)
Length = 554
Score = 29.6 bits (65), Expect = 7.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 114 FDKSWKEEIPTDKTGDFDMIYGFLRENWDIVRWVAL 149
F + + ++ TD+T D + G+L W + RW A+
Sbjct: 250 FKRGVRPDLLTDQTSAHDPVNGYLPAGWSLERWHAM 285
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,429,986
Number of Sequences: 164201
Number of extensions: 1476166
Number of successful extensions: 4932
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4924
Number of HSP's gapped (non-prelim): 13
length of query: 261
length of database: 59,974,054
effective HSP length: 108
effective length of query: 153
effective length of database: 42,240,346
effective search space: 6462772938
effective search space used: 6462772938
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144516.7