BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144515.17 - phase: 0 /pseudo
         (58 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BIOB_ECOLI (P12996) Biotin synthase (EC 2.8.1.6) (Biotin synthet...    30  0.91
BIOB_ERWHE (Q47862) Biotin synthase (EC 2.8.1.6) (Biotin synthet...    30  1.2
BIOB_SERMA (P36569) Biotin synthase (EC 2.8.1.6) (Biotin synthet...    29  2.0
BIOB_SALTY (P12678) Biotin synthase (EC 2.8.1.6) (Biotin synthet...    28  3.5

>BIOB_ECOLI (P12996) Biotin synthase (EC 2.8.1.6) (Biotin
          synthetase)
          Length = 346

 Score = 30.4 bits (67), Expect = 0.91
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 3  MNEVHMLNVRPILSNLGEVDLVHRNHTRPRRYQLLQIMCVLDPSC 47
          +++V  L  +P+L  L E   VHR H  PR+ Q+  ++ +   +C
Sbjct: 9  LSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGAC 53


>BIOB_ERWHE (Q47862) Biotin synthase (EC 2.8.1.6) (Biotin
          synthetase)
          Length = 346

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 13/45 (28%), Positives = 25/45 (54%)

Query: 3  MNEVHMLNVRPILSNLGEVDLVHRNHTRPRRYQLLQIMCVLDPSC 47
          +++V  L  +P+L  L E   +HR H  PR+ Q+  ++ +   +C
Sbjct: 9  LSQVTELFDKPLLDLLFEAQTIHRQHFDPRQVQVSTLLSIKTGAC 53


>BIOB_SERMA (P36569) Biotin synthase (EC 2.8.1.6) (Biotin
          synthetase)
          Length = 346

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 12 RPILSNLGEVDLVHRNHTRPRRYQLLQIMCVLDPSC 47
          +P+L  L E   VHR H  PR+ Q+  ++ +   +C
Sbjct: 19 KPLLELLFEAQTVHRQHFDPRQVQVSTLLSIKTGAC 54


>BIOB_SALTY (P12678) Biotin synthase (EC 2.8.1.6) (Biotin
          synthetase)
          Length = 346

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 12/45 (26%), Positives = 25/45 (54%)

Query: 3  MNEVHMLNVRPILSNLGEVDLVHRNHTRPRRYQLLQIMCVLDPSC 47
          +++V  L  +P+L  L E   +HR H  P++ Q+  ++ +   +C
Sbjct: 9  LSQVTELFEKPLLELLFEAQQIHRQHFDPQQVQVSTLLSIKTGAC 53


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.334    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,531,331
Number of Sequences: 164201
Number of extensions: 183583
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 4
length of query: 58
length of database: 59,974,054
effective HSP length: 34
effective length of query: 24
effective length of database: 54,391,220
effective search space: 1305389280
effective search space used: 1305389280
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 59 (27.3 bits)