BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144515.12 - phase: 0 
         (357 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SLD3_SCHPO (Q09761) DNA replication regulator sld3                     31  5.5
SERC_YEAST (P33330) Phosphoserine aminotransferase (EC 2.6.1.52)...    30  7.2
LEP4_LEGPN (O68433) Type 4 prepilin-like proteins leader peptide...    30  7.2
DRTS_PLABA (Q27713) Bifunctional dihydrofolate reductase-thymidy...    30  7.2
YF15_METJA (Q58910) Hypothetical protein MJ1515                        30  9.4

>SLD3_SCHPO (Q09761) DNA replication regulator sld3
          Length = 668

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 43  VISLKNHIVSSPSKSLSLYNASMLKASLNLPMITIKLVEKYHHVFMQFQPSPGLPPR 99
           +  +KN  ++ PS SLS    SM   S N P   +   EK     +Q Q    + P+
Sbjct: 515 IARIKNREINLPSSSLSKQRNSMHDISTNFPRRNLSFTEKLTMASLQGQSEESVQPK 571


>SERC_YEAST (P33330) Phosphoserine aminotransferase (EC 2.6.1.52)
           (PSAT)
          Length = 395

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 25  VRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASMLKASLNLPMITIKLVEK 82
           ++ D LD   LKE   +H+  LK H  S      S+YNA  +KA  NL     +  EK
Sbjct: 337 LKKDGLDDQFLKEAAARHLTGLKGH-RSVGGFRASIYNALSVKAVQNLVDFIKEFAEK 393


>LEP4_LEGPN (O68433) Type 4 prepilin-like proteins leader peptide
           processing enzyme [Includes: Leader peptidase (EC
           3.4.23.43) (Prepilin peptidase); N-methyltransferase (EC
           2.1.1.-)]
          Length = 287

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 189 LELVSWRKELSVSELEKRVMGFNYDADKRRHDIQFPMFLPKSFALEKRVKTWVEGWQTLP 248
           L ++ +R  + + E  K      +  ++R+  I+  +FLP+SF      K  V+ WQ +P
Sbjct: 28  LNVIIYRLPIILQEEWKEQCCELFHFEQRKEKIKLNLFLPRSFC--PHCKAMVKAWQNIP 85

Query: 249 YIS 251
            ++
Sbjct: 86  LLA 88


>DRTS_PLABA (Q27713) Bifunctional dihydrofolate
           reductase-thymidylate synthase (DHFR-TS) [Includes:
           Dihydrofolate reductase (EC 1.5.1.3); Thymidylate
           synthase (EC 2.1.1.45)]
          Length = 587

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 28/116 (24%)

Query: 11  FDHIRTFVNA----RVKWVRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASML 66
           F  + +++N     R+KW RD Y++     + NLK+ + L  +I+SS +           
Sbjct: 55  FSSVTSYINENNYIRLKWKRDKYME-----KHNLKNNVELNTNIISSTN----------- 98

Query: 67  KASLNLPMITIKLVEKYHHVFMQFQPSPGLPPRIKLTAQALALHKEEMEVHNSRTN 122
               NL  I +   + +  +  +F+P   L  RI +   +  L KE++   N+  N
Sbjct: 99  ----NLQNIVVMGKKSWESIPKKFKP---LQNRINIIL-SRTLKKEDIVNENNNEN 146


>YF15_METJA (Q58910) Hypothetical protein MJ1515
          Length = 355

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 14/32 (43%), Positives = 20/32 (61%), Gaps = 1/32 (3%)

Query: 165 LAYYPDYFDVCVVEDPLSGKEVLALELVSWRK 196
           +A+YPD F V V+++P+   E L  E V W K
Sbjct: 35  IAFYPDGF-VRVIKEPIKMNEALLAECVRWTK 65


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,983,641
Number of Sequences: 164201
Number of extensions: 1649761
Number of successful extensions: 4036
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4035
Number of HSP's gapped (non-prelim): 5
length of query: 357
length of database: 59,974,054
effective HSP length: 111
effective length of query: 246
effective length of database: 41,747,743
effective search space: 10269944778
effective search space used: 10269944778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)