BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144513.4 - phase: 0 /pseudo
         (1015 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CVRA_SALTY (P65524) Cell volume regulation protein A                   35  1.3
CVRA_SALTI (P65525) Cell volume regulation protein A                   35  1.3
CVRA_SHIFL (Q83RQ1) Cell volume regulation protein A                   33  3.0
CVRA_ECOLI (P76007) Cell volume regulation protein A                   33  3.0
CVRA_ECOL6 (P59239) Cell volume regulation protein A                   33  3.0
NU4C_MAIZE (P11647) NAD(P)H-quinone oxidoreductase chain 4, chlo...    33  5.1

>CVRA_SALTY (P65524) Cell volume regulation protein A
          Length = 577

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 647 FMVSKLLLMPPALLTFFMQMAIFSFVRLTLMRPLLYPTFFLNTKLFLARKLILISQIWSL 706
           F+V  LL+ P  L    +   I S   +   RPL   T  L  + F  R+ I IS +   
Sbjct: 283 FLVLGLLVTPSDLWPIAVPALILSIWMIFFARPLSVFTGLLPFRGFNLRERIFISWVGLR 342

Query: 707 AQIPVLVLKIYSELISLSTSRIIFLSIWGFLLSLEDLKLKILSLLW 752
             +P+ +L ++  +  L  +R+ F     F + L  L L+  SL W
Sbjct: 343 GAVPI-ILAVFPMMAGLENARLFFNV--AFFVVLVSLLLQGTSLSW 385


>CVRA_SALTI (P65525) Cell volume regulation protein A
          Length = 577

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 647 FMVSKLLLMPPALLTFFMQMAIFSFVRLTLMRPLLYPTFFLNTKLFLARKLILISQIWSL 706
           F+V  LL+ P  L    +   I S   +   RPL   T  L  + F  R+ I IS +   
Sbjct: 283 FLVLGLLVTPSDLWPIAVPALILSIWMIFFARPLSVFTGLLPFRGFNLRERIFISWVGLR 342

Query: 707 AQIPVLVLKIYSELISLSTSRIIFLSIWGFLLSLEDLKLKILSLLW 752
             +P+ +L ++  +  L  +R+ F     F + L  L L+  SL W
Sbjct: 343 GAVPI-ILAVFPMMAGLENARLFFNV--AFFVVLVSLLLQGTSLSW 385


>CVRA_SHIFL (Q83RQ1) Cell volume regulation protein A
          Length = 578

 Score = 33.5 bits (75), Expect = 3.0
 Identities = 29/106 (27%), Positives = 47/106 (43%), Gaps = 3/106 (2%)

Query: 647 FMVSKLLLMPPALLTFFMQMAIFSFVRLTLMRPLLYPTFFLNTKLFLARKLILISQIWSL 706
           F+V  LL+ P  LL   +   I S   +   RPL      L  + F  R+ + IS +   
Sbjct: 283 FLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLR 342

Query: 707 AQIPVLVLKIYSELISLSTSRIIFLSIWGFLLSLEDLKLKILSLLW 752
             +P+ +L ++  +  L  +R+ F     F + L  L L+  SL W
Sbjct: 343 GAVPI-ILAVFPMMAGLENARLFFNV--AFFVVLVSLLLQGTSLSW 385


>CVRA_ECOLI (P76007) Cell volume regulation protein A
          Length = 578

 Score = 33.5 bits (75), Expect = 3.0
 Identities = 29/106 (27%), Positives = 47/106 (43%), Gaps = 3/106 (2%)

Query: 647 FMVSKLLLMPPALLTFFMQMAIFSFVRLTLMRPLLYPTFFLNTKLFLARKLILISQIWSL 706
           F+V  LL+ P  LL   +   I S   +   RPL      L  + F  R+ + IS +   
Sbjct: 283 FLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLR 342

Query: 707 AQIPVLVLKIYSELISLSTSRIIFLSIWGFLLSLEDLKLKILSLLW 752
             +P+ +L ++  +  L  +R+ F     F + L  L L+  SL W
Sbjct: 343 GAVPI-ILAVFPMMAGLENARLFFNV--AFFVVLVSLLLQGTSLSW 385


>CVRA_ECOL6 (P59239) Cell volume regulation protein A
          Length = 578

 Score = 33.5 bits (75), Expect = 3.0
 Identities = 29/106 (27%), Positives = 47/106 (43%), Gaps = 3/106 (2%)

Query: 647 FMVSKLLLMPPALLTFFMQMAIFSFVRLTLMRPLLYPTFFLNTKLFLARKLILISQIWSL 706
           F+V  LL+ P  LL   +   I S   +   RPL      L  + F  R+ + IS +   
Sbjct: 283 FLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERVFISWVGLR 342

Query: 707 AQIPVLVLKIYSELISLSTSRIIFLSIWGFLLSLEDLKLKILSLLW 752
             +P+ +L ++  +  L  +R+ F     F + L  L L+  SL W
Sbjct: 343 GAVPI-ILAVFPMMAGLENARLFFNV--AFFVVLVSLLLQGTSLSW 385


>NU4C_MAIZE (P11647) NAD(P)H-quinone oxidoreductase chain 4,
           chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
           4) (NADH-plastoquinone oxidoreductase chain 4)
          Length = 500

 Score = 32.7 bits (73), Expect = 5.1
 Identities = 28/86 (32%), Positives = 46/86 (52%), Gaps = 12/86 (13%)

Query: 651 KLLLMPPALLTFFMQ--MAIFSFVRLTLMRPLL--YPTFFLNTKLFL---ARKLILISQI 703
           K +LMP  L+TF M   M +     L+++R +   Y  F +  K F+    R+L L+  I
Sbjct: 409 KFMLMPKMLITFVMAIGMILTPIYLLSMLRQMFYGYKLFHVPNKNFVDSGPRELFLLICI 468

Query: 704 WSLAQIPVLVLKIYSELI-SLSTSRI 728
           +    +PV+ + IY +L+ SLS  R+
Sbjct: 469 F----LPVIGIGIYPDLVLSLSVDRV 490


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.368    0.167    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,866,750
Number of Sequences: 164201
Number of extensions: 3313756
Number of successful extensions: 18458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18453
Number of HSP's gapped (non-prelim): 12
length of query: 1015
length of database: 59,974,054
effective HSP length: 120
effective length of query: 895
effective length of database: 40,269,934
effective search space: 36041590930
effective search space used: 36041590930
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 71 (32.0 bits)