BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144513.2 - phase: 0 
         (215 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LR1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related pro...    31  1.9
VGNM_RCMV (P13561) Genome polyprotein M [Contains: Coat protein ...    30  5.5
RL24_RICCN (Q92GX7) 50S ribosomal protein L24                          29  7.2
CG2B_HYDAT (P51988) G2/mitotic-specific cyclin B (Fragment)            29  9.4

>LR1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein
            1B precursor (Low-density lipoprotein receptor-related
            protein-deleted in tumor) (LRP-DIT)
          Length = 4599

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 98   CYSSDLIGGGLVLD---------ESLPFNISTLNTVMLLNCSDNILQSPLNCSSNSICRQ 148
            CY+   +  G + D         + L   +ST +TV         +     C+ N  C  
Sbjct: 2559 CYNRRCVPHGKLCDGTNDCGDSSDELDCKVSTCSTVEFRCADGTCIPRSARCNQNMDCSD 2618

Query: 149  FEEKVEEGNGCMNTLCCHYLKDSVMNSHKIR 179
              ++     GC NT C H+ K  V ++  IR
Sbjct: 2619 ASDE----KGCNNTDCTHFYKLGVKSTGFIR 2645


>VGNM_RCMV (P13561) Genome polyprotein M [Contains: Coat protein
           VP37; Coat protein VP23]
          Length = 996

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 99  YSSDLIGGGLVLDESLPFNISTLNT 123
           ++ DLIGGG+  D +  +N++ LNT
Sbjct: 811 FTCDLIGGGITTDSNTGWNLTALNT 835


>RL24_RICCN (Q92GX7) 50S ribosomal protein L24
          Length = 109

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 15/47 (31%), Positives = 27/47 (56%), Gaps = 1/47 (2%)

Query: 75  KILKIDTSANKLVIKPPNIFKHTCYSSDLIGGGLVLDESLPFNISTL 121
           KILK+    +K+++   N+ K    S+ +  GG++  E LP +IS +
Sbjct: 25  KILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKE-LPIHISNI 70


>CG2B_HYDAT (P51988) G2/mitotic-specific cyclin B (Fragment)
          Length = 361

 Score = 28.9 bits (63), Expect = 9.4
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 105 GGGLVLDESLPFNISTLNTVMLLNCSDNI--LQSPLNCSSNSICRQFEEKVEEGNGCMNT 162
           G G ++ +S   +   L T  ++    +I  ++ P+N   NS      + ++  +    T
Sbjct: 39  GLGRMVSQSNLISDVQLKTTKIIPAYQDIADVEVPINAMINSFTELEVDDIDLEDLGNPT 98

Query: 163 LCCHYLKD--SVMNSHKIRLRVGSCTAYTCLVDFKPDEPFKKW 203
           LC  YLKD    MN  + RL      A+   ++FK       W
Sbjct: 99  LCAEYLKDIYKYMNKLERRLEPSDYMAHQAEINFKMRSILVDW 141


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,177,059
Number of Sequences: 164201
Number of extensions: 1113222
Number of successful extensions: 2276
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2274
Number of HSP's gapped (non-prelim): 6
length of query: 215
length of database: 59,974,054
effective HSP length: 106
effective length of query: 109
effective length of database: 42,568,748
effective search space: 4639993532
effective search space used: 4639993532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)