BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144513.18 + phase: 0
(107 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PARC_SYNY3 (P73077) Topoisomerase IV subunit A (EC 5.99.1.-) 32 0.20
NK3R_RAT (P16177) Neuromedin K receptor (NKR) (Neurokinin B rece... 32 0.27
BBP1_YEAST (Q12365) BBP1 protein 31 0.45
YB33_SCHPO (O14338) Hypothetical serine-rich protein C2F12.03c i... 30 0.78
NK3R_RABIT (O97512) Neuromedin K receptor (NKR) (Neurokinin B re... 30 0.78
NK3R_HUMAN (P29371) Neuromedin K receptor (NKR) (Neurokinin B re... 30 0.78
IMP2_SCHPO (Q10199) Septation protein imp2 30 0.78
INO1_CITPA (P42802) Inositol-3-phosphate synthase (EC 5.5.1.4) (... 30 1.0
YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 i... 30 1.3
YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5 in chromosome III 29 2.3
MAO1_ECOLI (P26616) NAD-dependent malic enzyme (EC 1.1.1.38) (NA... 29 2.3
LIK2_RAT (P53670) LIM domain kinase 2 (EC 2.7.1.-) (LIMK-2) 29 2.3
HSF_SCHPO (Q02953) Heat shock factor protein (HSF) (Heat shock t... 29 2.3
HOBO_DROME (P12258) Transposable element Hobo transposase 29 2.3
CHIA_ECOLI (P13656) Probable bifunctional chitinase/lysozyme pre... 29 2.3
VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spi... 28 2.9
SP49_SCHPO (O14102) Spliceosome-associated protein 49 28 2.9
NCO6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in... 28 2.9
INO1_SESIN (Q9FYV1) Inositol-3-phosphate synthase (EC 5.5.1.4) (... 28 2.9
ZCW1_HUMAN (Q9Y6X9) Zinc finger CW-type coiled-coil domain prote... 28 3.9
>PARC_SYNY3 (P73077) Topoisomerase IV subunit A (EC 5.99.1.-)
Length = 920
Score = 32.3 bits (72), Expect = 0.20
Identities = 25/87 (28%), Positives = 38/87 (42%), Gaps = 1/87 (1%)
Query: 10 SMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLFNPSS 69
S PT+ A + L T + + P SKL SVAE +P TLF P +
Sbjct: 549 SPPTADSAPEAKQDDLNLAVKPTPKTVKQEAQPSPEVIATHSKLVSVAEKNPLTLFTPQT 608
Query: 70 SPDNLPFLDIFDSPQLMATPAQVSNSN 96
P FL I ++ P +++++N
Sbjct: 609 PPAE-AFLSINLQGEIAWHPEELTSAN 634
>NK3R_RAT (P16177) Neuromedin K receptor (NKR) (Neurokinin B
receptor) (NK-3 receptor) (NK-3R) (Tachykinin receptor
3)
Length = 452
Score = 32.0 bits (71), Expect = 0.27
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 4 CFRVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPND 47
C + +S + +TRF PTR +L TV+ + + F+PND
Sbjct: 361 CPFIQVSSYDELELKTTRFHPTRQSSLYTVSRMESVTVLFDPND 404
>BBP1_YEAST (Q12365) BBP1 protein
Length = 385
Score = 31.2 bits (69), Expect = 0.45
Identities = 22/48 (45%), Positives = 27/48 (55%), Gaps = 9/48 (18%)
Query: 15 MPASSTRFTPT-----RLRTLR-TVNAISKSKIPFNP---NDPFLSKL 53
+P R PT RL T R T+N +S S+IPF P +DP LSKL
Sbjct: 120 VPREPLRNEPTDTFGHRLHTKRRTINELSNSQIPFIPPQEDDPLLSKL 167
>YB33_SCHPO (O14338) Hypothetical serine-rich protein C2F12.03c in
chromosome II
Length = 891
Score = 30.4 bits (67), Expect = 0.78
Identities = 30/102 (29%), Positives = 40/102 (38%), Gaps = 9/102 (8%)
Query: 2 ATCFRVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSP 61
+T F P + P P S FT L +++ S +P PFLS S+A
Sbjct: 702 STSFSSPPT-PHRSPFSGQAFTGMGLSNYSLMSSSSFPSAQSSPTSPFLSGTPSIA---- 756
Query: 62 ETLFNPSSSPDNLPFLDIFDSPQLMATPAQVSNSNFSFHFLQ 103
N SSS +L F + DS P + S H LQ
Sbjct: 757 ----NQSSSIASLQFGRMVDSLVGPVQPIPAQTTGCSVHSLQ 794
>NK3R_RABIT (O97512) Neuromedin K receptor (NKR) (Neurokinin B
receptor) (NK-3 receptor) (NK-3R) (Tachykinin receptor
3)
Length = 467
Score = 30.4 bits (67), Expect = 0.78
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 4 CFRVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPND 47
C + +S + +TRF PTR +L TV + + F+P+D
Sbjct: 376 CPFIQVSSYDELELKTTRFHPTRQSSLYTVTRMESMTVVFDPSD 419
>NK3R_HUMAN (P29371) Neuromedin K receptor (NKR) (Neurokinin B
receptor) (NK-3 receptor) (NK-3R) (Tachykinin receptor
3)
Length = 465
Score = 30.4 bits (67), Expect = 0.78
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 4 CFRVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSP 61
C + +S + +TRF P R ++ TV + + F+PND ++ + ++P
Sbjct: 374 CPFIKVSSYDELELKTTRFHPNRQSSMYTVTRMESMTVVFDPNDADTTRSSRKKRATP 431
>IMP2_SCHPO (Q10199) Septation protein imp2
Length = 670
Score = 30.4 bits (67), Expect = 0.78
Identities = 21/83 (25%), Positives = 40/83 (47%), Gaps = 15/83 (18%)
Query: 23 TPTRLRTLRTVNAISKSKIPFNPNDPFLSKL--------ASVAESSPETLFNP------- 67
TP+ +++L TV++ S +P FLSK +V ++P+ L +P
Sbjct: 346 TPSAIQSLTTVSSNSSQNGRSSPKKSFLSKFKLTSRPSTPNVGNTAPDALSSPRNDSPLT 405
Query: 68 SSSPDNLPFLDIFDSPQLMATPA 90
S++ + + L + + P+ TPA
Sbjct: 406 SAADEQMKHLSLQEEPKQNPTPA 428
>INO1_CITPA (P42802) Inositol-3-phosphate synthase (EC 5.5.1.4)
(Myo-inositol-1-phosphate synthase) (MI-1-P synthase)
(IPS)
Length = 507
Score = 30.0 bits (66), Expect = 1.0
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 26 RLRTLRTVNAISKSKIPFNPNDPFLSKLASV----AESSPETLFNPSSSPDNLPFLDIFD 81
R+ L T N S + ND S LAS+ AE SP TL+ + +N+PF++
Sbjct: 224 RVVVLWTANTERYSNVIVGLNDTVESLLASLDKNEAEISPSTLYAIACVLENIPFIN--G 281
Query: 82 SPQLMATPAQV 92
SPQ P +
Sbjct: 282 SPQNTFVPGLI 292
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1
intergenic region
Length = 636
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 13 TSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETL---FNPSS 69
TS+P S+ TPT T T + + I + +S S + S +T ++P++
Sbjct: 52 TSLPPVSSTATPTYYSTSLTYDETLHTSIDVSSTSTLVSSTDSSSSSEQDTYSSQYDPAT 111
Query: 70 SPDNL--PFLDIFDSPQLMATPAQVSN 94
S ++ P + IF S M++ + +++
Sbjct: 112 SSYSIITPSMSIFSSTSPMSSSSSITS 138
>YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5 in chromosome III
Length = 1216
Score = 28.9 bits (63), Expect = 2.3
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 17 ASSTRFTPTRLRTLRTVNAISKSKIP-----FNPNDPFLSKLASVAESSPE-TLFNPSSS 70
AS+++ TP+ T T N S SKIP P P L+ A+ SS E T +P++S
Sbjct: 831 ASTSQSTPSATLTSTTENIPSTSKIPETSTTQRPTSPILTSGATSTSSSTESTTTSPTTS 890
>MAO1_ECOLI (P26616) NAD-dependent malic enzyme (EC 1.1.1.38)
(NAD-ME)
Length = 574
Score = 28.9 bits (63), Expect = 2.3
Identities = 15/38 (39%), Positives = 18/38 (46%)
Query: 8 PISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNP 45
PI MP S P S TP + NA+ + PFNP
Sbjct: 420 PIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNP 457
>LIK2_RAT (P53670) LIM domain kinase 2 (EC 2.7.1.-) (LIMK-2)
Length = 638
Score = 28.9 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 11 MPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFL 50
M +++ A + R R+LR N+ISKS P +P +P L
Sbjct: 265 MLSTLDAKENQEGTLRRRSLRRSNSISKSPGPSSPKEPLL 304
>HSF_SCHPO (Q02953) Heat shock factor protein (HSF) (Heat shock
transcription factor) (HSTF)
Length = 609
Score = 28.9 bits (63), Expect = 2.3
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 42 PFNPNDPFLSKLASVAESSPETLFNPSSSPDNLPFLDIFDSPQLMATPAQVSNSN 96
P N N P S L SV P N PD+ P D F + + +P + SN N
Sbjct: 520 PTNLNLPVSSDLDSVLNIPP----NEDVFPDSNPVFDEFTNISNLTSPIEASNGN 570
>HOBO_DROME (P12258) Transposable element Hobo transposase
Length = 644
Score = 28.9 bits (63), Expect = 2.3
Identities = 24/93 (25%), Positives = 37/93 (38%), Gaps = 11/93 (11%)
Query: 6 RVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLF 65
+VPIS S+ ++ T TP T T + P P P +PE+L
Sbjct: 504 QVPISYTLSLESTETPRTPETPETPETPETPETPETPETPETP----------ETPESLE 553
Query: 66 NPSSSPDNLPFLDIFDSPQLMATPAQVSNSNFS 98
+P+ P + ++ P SNSNF+
Sbjct: 554 SPNLFPKKNKTIS-SENEFFFPKPVTESNSNFN 585
>CHIA_ECOLI (P13656) Probable bifunctional chitinase/lysozyme
precursor [Includes: Chitinase (EC 3.2.1.14); Lysozyme
(EC 3.2.1.17)]
Length = 897
Score = 28.9 bits (63), Expect = 2.3
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Query: 59 SSPETLFN-PSSSPDNLPFLDIFDSPQLMATPAQVSNSNFS 98
S+P++ + P SPD P D+ +P + PA SN N++
Sbjct: 188 SNPQSCTSAPQPSPDVKPAPDVKPAPDVQPAPADKSNDNYA 228
>VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spike
glycoprotein)
Length = 681
Score = 28.5 bits (62), Expect = 2.9
Identities = 22/90 (24%), Positives = 37/90 (40%), Gaps = 8/90 (8%)
Query: 6 RVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLF 65
++P +PT+ P TPT TL T + P N ++ ++ + E P T
Sbjct: 230 KIPSPLPTARPEIKPTSTPTDATTLNTTD-------PNNDDEDLITSGSGSGEQEPYTTS 282
Query: 66 NPSSSPDNLPFLDIFDSPQLMATPAQVSNS 95
+ + + SPQ +TP Q N+
Sbjct: 283 DAVTKQGLSSTMPPTPSPQ-PSTPQQEGNN 311
>SP49_SCHPO (O14102) Spliceosome-associated protein 49
Length = 335
Score = 28.5 bits (62), Expect = 2.9
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 6 RVPISMPTSMPASSTRFTPTRLRTLRTVNAISKSKIPFNPNDPFLSKLASVAESSPETLF 65
+V ++ +++P + TP T I+ + IP PN P + +V
Sbjct: 201 KVAVTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVP-------- 252
Query: 66 NPSSSPDNLPFLDIFDSPQLMATP 89
P S P+ LPF P + A P
Sbjct: 253 -PLSIPNVLPFTAAQHFPGMPAMP 275
>NCO6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in
breast cancer-3 protein) (Cancer-amplified
transcriptional coactivator ASC-2) (Activating signal
cointegrator-2) (ASC-2) (Peroxisome
proliferator-activated receptor-interacting protein) (PP
Length = 2063
Score = 28.5 bits (62), Expect = 2.9
Identities = 15/47 (31%), Positives = 25/47 (52%)
Query: 42 PFNPNDPFLSKLASVAESSPETLFNPSSSPDNLPFLDIFDSPQLMAT 88
P NP+ L+++AS+ E+S + P+N+P + QLM T
Sbjct: 1118 PQNPSSSPLAEMASLPEASGSEAPSVPGGPNNMPSHVVLPQNQLMMT 1164
>INO1_SESIN (Q9FYV1) Inositol-3-phosphate synthase (EC 5.5.1.4)
(Myo-inositol-1-phosphate synthase) (MI-1-P synthase)
(IPS)
Length = 510
Score = 28.5 bits (62), Expect = 2.9
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 30 LRTVNAISKSKIPFNPNDPFLSKLASV----AESSPETLFNPSSSPDNLPFLDIFDSPQL 85
L T N S + ND S +ASV AE SP TL+ + +N+PF++ SPQ
Sbjct: 228 LWTANTERYSNVVVGLNDTAESLMASVERNEAEISPSTLYAIACVFENVPFIN--GSPQN 285
Query: 86 MATPAQV 92
P +
Sbjct: 286 TFVPGLI 292
>ZCW1_HUMAN (Q9Y6X9) Zinc finger CW-type coiled-coil domain protein
1
Length = 970
Score = 28.1 bits (61), Expect = 3.9
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 8 PISMPTSMPASSTRFTPT-----RLRTLRTVNAISKSKIPFNPNDP-----FLSKLAS-- 55
P S+PT PAS R P +L L S S++ P P L K AS
Sbjct: 567 PPSLPTPRPASQPRKAPVISSTPKLPALAAREEASTSRLLQPPEAPRKPANTLVKTASRP 626
Query: 56 ---VAESSPETLFNPSSSPDNLPFLDIFDSPQLMATPAQVSNS 95
V + SP L N S SP +P + +P + T + + S
Sbjct: 627 APLVQQLSPSLLPN-SKSPREVPSPKVIKTPVVKKTESPIKLS 668
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.129 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,071,056
Number of Sequences: 164201
Number of extensions: 435313
Number of successful extensions: 1455
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 67
length of query: 107
length of database: 59,974,054
effective HSP length: 83
effective length of query: 24
effective length of database: 46,345,371
effective search space: 1112288904
effective search space used: 1112288904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144513.18