BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144503.9 + phase: 0 /pseudo
         (346 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains...    73  9e-13
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog               72  2e-12
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type...    69  2e-11
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type...    68  3e-11
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type...    64  6e-10
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type...    64  6e-10
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog               60  8e-09
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem...    59  2e-08
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem...    57  5e-08
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro...    54  4e-07
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type...    50  6e-06
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ...    49  1e-05
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III     49  1e-05
YSM6_CAEEL (Q10126) Hypothetical protein F52C9.6 in chromosome III     41  0.004
YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III    40  0.009
AI2M_YEAST (P03876) Putative COX1/OXI3 intron 2 protein                35  0.36
RTP2_TRYBG (P15594) Retrotransposable element SLACS 132 kDa prot...    34  0.47
POL_BIV27 (P19561) Pol polyprotein [Contains: Protease (EC 3.4.2...    33  0.81
POL_BIV06 (P19560) Pol polyprotein [Contains: Protease (EC 3.4.2...    33  0.81
RUV2_XENLA (Q9DE27) RuvB-like 2 (EC 3.6.1.-) (Reptin)                  33  1.1

>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1300

 Score = 73.2 bits (178), Expect = 9e-13
 Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 9/144 (6%)

Query: 1   KLWERVIERRLRK--EARVTDNQFGFMPGRLTMEAIYLLRRVIE--RYRTDKKDLH--LV 54
           K+  +++  R+++  +A +  +Q GF+PG   M+  + +R+ I    Y    KD +  ++
Sbjct: 567 KILNKILANRIQEHIKAIIHPDQVGFIPG---MQGWFNIRKSINVIHYINKLKDKNHMII 623

Query: 55  FIDLEKTYDRVPREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGV 114
            +D EK +D++    + K LE+ G++  Y+  IK +Y     +++      E  P+  G 
Sbjct: 624 SLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGT 683

Query: 115 HQGSTLSPYLFTLVLDVLTEHIQE 138
            QG  LSPYLF +VL+VL   I++
Sbjct: 684 RQGCPLSPYLFNIVLEVLARAIRQ 707


>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score = 72.4 bits (176), Expect = 2e-12
 Identities = 64/300 (21%), Positives = 133/300 (44%), Gaps = 27/300 (9%)

Query: 1   KLWERVIERRLRKEAR--VTDNQFGFMPGRLTMEAIYLLRRVIERYRTDKKDLHLVF-ID 57
           K+  +++  R+++  +  +  +Q GF+PG      I     VI+     K   H++  ID
Sbjct: 540 KILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNKDHMILSID 599

Query: 58  LEKTYDRVPREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGVHQG 117
            EK +D +    + + L+K G+   +++ I+ +Y   + ++       + FP+  G  QG
Sbjct: 600 AEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQG 659

Query: 118 STLSPYLFTLVLDVLT-----------EHIQELAPRCMLFAD--VVLVGESREEVNGRLE 164
             LSP LF +V++VL             HI     +  LFAD  +V +  +R+     LE
Sbjct: 660 CPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIKLSLFADDMIVYLENTRDSTTKLLE 719

Query: 165 TWRQALEAYGFRL-SRSTTEYMECNFSGRRSRSTLEVKVGDHIIPQVTRFKYLGSFV*ND 223
             ++     G+++ +  +  ++  N    ++  T++  +   ++P+  + KYLG ++  D
Sbjct: 720 VIKEYSNVSGYKINTHKSVAFIYTN--NNQAEKTVKDSIPFTVVPK--KMKYLGVYLTKD 775

Query: 224 GEIEADVSHRIQAEWLKWRRASGVLCDKKVPLKLKGK--FYRTAVRPALLYGTECWAVKS 281
                   ++   E L+   A  V   K +P    G+    + ++ P  +Y      +K+
Sbjct: 776 ----VKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKA 831


>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 711

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 78/297 (26%), Positives = 124/297 (41%), Gaps = 35/297 (11%)

Query: 1   KLWERVIERRLRKEARVTDNQFGFMPGRLTMEAIYLLRRVIERYRTDKKDLHLVFIDLEK 60
           +L  R++ +RL     +   Q G+     T+    LL   I   R  +K  ++V +D+ K
Sbjct: 87  RLLHRILAKRLEAAVELHPAQKGYARIDGTLVNSLLLDTYISSRREQRKTYNVVSLDVRK 146

Query: 61  TYDRVPREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGT-TEDFPITIGVHQGST 119
            +D V    + +AL++ G+       I      ++T++R   G+ T    I  GV QG  
Sbjct: 147 AFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDP 206

Query: 120 LSPYLFTLVLDVLTEHIQ-----------ELAPRCMLFADVVLVGESREEVNGRLETWRQ 168
           LSP+LF  VLD L   +Q           E  P      D++L+ ++   +   L T   
Sbjct: 207 LSPFLFNAVLDELLCSLQSTPGIGGTIGEEKIPVLAFADDLLLLEDNDVLLPTTLATVAN 266

Query: 169 ALEAYGFRLSRSTTEYMECNFSG----RRSRSTLEVKVGDHIIPQVT----RFKYLGSFV 220
                G  L+   +  +    SG     R++  L V   D+++  VT     F+YLG F 
Sbjct: 267 FFRLRGMSLNAKKSVSISVAASGGVCIPRTKPFLRV---DNVLLPVTDRMQTFRYLGHFF 323

Query: 221 *NDGEIEADVSHRIQAEWLKWRRASGVLCDKKVPLKLKGK--FYRTAVRPALLYGTE 275
              G  +  V +   + WLK        C +  PLK + K    R  V P LLYG +
Sbjct: 324 GLSGAAKPTVYN--LSRWLK--------CVEAAPLKPEQKLSLIREHVVPKLLYGLQ 370


>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 606

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 74/265 (27%), Positives = 111/265 (40%), Gaps = 30/265 (11%)

Query: 30  TMEAIYLLRRVIERYRTDKKDLHLVFIDLEKTYDRVPREILWKALEKKGVRIAYIRAIKD 89
           T+  I +L   I+  R   K  ++V +D+ K +D V    + +A+   G+       I  
Sbjct: 2   TLANIIMLEHYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIMS 61

Query: 90  MYEGASTSVRTQDGTTEDFPITIGVHQGSTLSPYLFTLVLDVLTEHIQE------LAPRC 143
               A T++     TT    I  GV QG  LSP LF +VLD L   + +      + P C
Sbjct: 62  TITDAYTNIVVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRLNDEQPGASMTPAC 121

Query: 144 ----MLFADVVLVGESRE-EVNGRLETWRQALEAYGFRLS-RSTTEYMECNFSGR---RS 194
               + FAD +L+ E R+ +V   L T        G  L+            SGR   RS
Sbjct: 122 KIASLAFADDLLLLEDRDIDVPNSLATTCAYFRTRGMTLNPEKCASISAATVSGRSVPRS 181

Query: 195 RSTLEVKVGDHIIP--QVTRFKYLGSFV*NDGEIEADVSHRIQAEWLKWRRASGVLCDKK 252
           + +  +  G +I P   +  FKYLG    + G  +  V +     WL+          +K
Sbjct: 182 KPSFTID-GRYIKPLGGINTFKYLGLTFSSTGVAKPTVYN--LTRWLRNL--------EK 230

Query: 253 VPLKLKGKFY--RTAVRPALLYGTE 275
            PLK   KFY  +T + P L YG +
Sbjct: 231 APLKPNQKFYILKTHLLPRLFYGLQ 255


>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
           retrotransposable element R2DM [Contains: Protease (EC
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Endonuclease]
          Length = 1057

 Score = 63.9 bits (154), Expect = 6e-10
 Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 26/284 (9%)

Query: 6   VIERRLRKEARVTDNQFGFMPGRLTMEAIYLLRRVIERYRTDKKDLHLVFIDLEKTYDRV 65
           ++  RL         Q GF+P     +   ++  V+       +  ++  +D+ K +D +
Sbjct: 431 ILATRLNSSINWDPRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSL 490

Query: 66  PREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGVHQGSTLSPYLF 125
               ++  L   G    ++  +++ YEG  TS+     ++E+F    GV QG  LSP LF
Sbjct: 491 SHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILF 550

Query: 126 TLVLDVLTE--------HIQELAPRCMLFA-DVVLVGESREEVNGRLETWRQALEAYGFR 176
            LV+D L           +         FA D+VL  E+R  +   L+     L   G +
Sbjct: 551 NLVMDRLLRTLPSEIGAKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLK 610

Query: 177 LSRSTTEYMECNFSGRRSRSTLEVK---VGDHIIPQVTR---FKYLGSFV*NDGEIEADV 230
           L+      +      ++  + LE +   VG   IP + R   +KYLG      G +  + 
Sbjct: 611 LNADKCFTVGIKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGINFTATGRVRCNP 670

Query: 231 SHRIQAEWLKWRRASGVLCDKKVPLKLKGKFY--RTAVRPALLY 272
           +  I     K +R +      K PLK + + +  RT + P L +
Sbjct: 671 AEDIGP---KLQRLT------KAPLKPQQRLFALRTVLIPQLYH 705


>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1025

 Score = 63.9 bits (154), Expect = 6e-10
 Identities = 63/267 (23%), Positives = 111/267 (40%), Gaps = 21/267 (7%)

Query: 3   WERVIERRLRKEARVTDNQFGFMPGRLTMEAIYLLRRVIERYRTDKKDLHLVFIDLEKTY 62
           + R++  R+ +   +   Q  F+      E   LL  +I+  R   K L++  +D++K +
Sbjct: 402 FHRILANRIGEHGLLDTRQRAFIVADGVAENTSLLSAMIKEARMKIKGLYIAILDVKKAF 461

Query: 63  DRVPREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGVHQGSTLSP 122
           D V    +  AL +K + +     I  +Y  + T +              GV QG  LSP
Sbjct: 462 DSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSP 521

Query: 123 YLFTLVLDVLTEHIQELAPRCM--------LFA-DVVLVGESREEVNGRLETWRQALEAY 173
            LF  V+D +   + E     M        +FA D+VL+ E+RE +   L      L+  
Sbjct: 522 LLFNCVMDAVLRRLPENTGFLMGAEKIGALVFADDLVLLAETREGLQASLSRIEAGLQEQ 581

Query: 174 GFRLSRSTTEYMECNFSGRRSRSTLEV----KVGDHIIPQV---TRFKYLGSFV*NDGEI 226
           G  +       +    SG+  +  +E      VG+  I Q+    ++KYLG    + G I
Sbjct: 582 GLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYLGVVYNSYGPI 641

Query: 227 EADVS-----HRIQAEWLKWRRASGVL 248
           +  ++      R+ A  LK ++   +L
Sbjct: 642 QVKINIAGDLQRVTAAPLKPQQRMAIL 668


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 36/144 (25%), Positives = 75/144 (52%), Gaps = 9/144 (6%)

Query: 1   KLWERVIERRLRKEAR--VTDNQFGFMPGRLTMEAIYLLRR---VIERYRTDKKDLHLVF 55
           K+  +++  ++++  +  +  +Q GF+P    M+  + +R+   +I+     K   H++ 
Sbjct: 540 KILNKILANQIQQHIKKLIHHDQVGFIPA---MQGWFNIRKSINIIQHINRTKDTNHMII 596

Query: 56  -IDLEKTYDRVPREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGV 114
            ID EK +D++ +  + K L K G+   Y++ I+ +Y+  + ++       E  P+  G 
Sbjct: 597 SIDAEKAFDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAPPLKTGT 656

Query: 115 HQGSTLSPYLFTLVLDVLTEHIQE 138
            QG  LSP L  +VL+VL   I++
Sbjct: 657 RQGCPLSPLLPNIVLEVLARAIRQ 680


>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
           jockey (EC 2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 28/320 (8%)

Query: 1   KLWERVIERRLRKEARVTDN----QFGFMPGRLTMEAIYLLRRVIERYRTDKKDLHLVFI 56
           K+ ER+I  R+     VT      QFGF     T E ++ +          K+     F+
Sbjct: 526 KMLERLILNRILTSEEVTRAIPKFQFGFRLQHGTPEQLHRVVNFALEALEKKEYAGSCFL 585

Query: 57  DLEKTYDRVPRE-ILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFP-ITIGV 114
           D+++ +DRV    +L+KA  K  +     + IK  +EG   SV T DG       I  GV
Sbjct: 586 DIQQAFDRVWHPGLLYKA--KSLLSPQLFQLIKSFWEGRKFSV-TADGCRSSVKFIEAGV 642

Query: 115 HQGSTLSPYLFTL-VLDVLTEH-IQELAPRCMLFA----DVVLVGESR--EEVNGRLETW 166
            QGS L P L+++   D+  ++ +  LA   +L A    D+ ++ +S    E    L+ +
Sbjct: 643 PQGSVLGPTLYSIFTADMPNQNAVTGLAEGEVLIATYADDIAVLTKSTCIVEATDALQEY 702

Query: 167 RQALEAYGFRLSRSTTEYMECNFSGRRS-RSTLEVKVGDHIIPQVTRFKYLGSFV*NDGE 225
             A + +  + + S       N +   + R    V +   ++     +KYLG  +     
Sbjct: 703 LDAFQEWAVKWNVSINAGKCANVTFTNAIRDCPGVTINGSLLSHTHEYKYLGVILDRSLT 762

Query: 226 IEADV-----SHRIQAEWLKWRRASGVLCDKKVPLKLKGKFYRTAVRPALLYGTECWAVK 280
               +     S R +   + W  A+      K+ L  K K Y+  V P L Y  + + + 
Sbjct: 763 FRRHITSLQHSFRTRITKMNWLLAAR----NKLSLDNKVKIYKCIVAPGLFYAIQVYGIA 818

Query: 281 SQ-HENQVSVAEMRMLRWMS 299
           ++ H N++ V + +MLR +S
Sbjct: 819 ARTHLNKIRVLQAKMLRKIS 838


>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
           jockey (EC 2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 72/318 (22%), Positives = 137/318 (42%), Gaps = 24/318 (7%)

Query: 1   KLWERVIERRLRKEARVTDN----QFGFMPGRLTMEAIYLLRRVIERYRTDKKDLHLVFI 56
           K+ ER+I  RL     VT      QFGF     T E ++ +         +K+     F+
Sbjct: 526 KIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFL 585

Query: 57  DLEKTYDRVPRE-ILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGVH 115
           D+++ +DRV    +L+KA      ++  +  +K   E  +  V      +   PI  GV 
Sbjct: 586 DIQQAFDRVWHPGLLYKAKRLFPPQLYLV--VKSFLEERTFHVSVDGYKSSIKPIAAGVP 643

Query: 116 QGSTLSPYLFTLVLDVLTEH--IQELAPRCMLFA----DVVLVGESR------EEVNGRL 163
           QGS L P L+++    +  H  + E+    +L A    D  ++ +S+        +   L
Sbjct: 644 QGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYL 703

Query: 164 ETWRQALEAYGFRLSRSTTEYMECNFSGRRSRSTLEVKVGDHIIPQVTRFKYLGSFV*ND 223
           + ++Q  E +  R++      +       R+ S   V +   +I     +KYLG  +   
Sbjct: 704 DAFQQWAENWNVRINAEKCANVT---FANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRK 760

Query: 224 GEIEADVSHRIQAEWLKWRRASGVLCDK-KVPLKLKGKFYRTAVRPALLYGTECWAVKSQ 282
                 +++  QA   K  R S ++  + K+ L  K   Y++ + P L YG + + + ++
Sbjct: 761 LTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAK 820

Query: 283 -HENQVSVAEMRMLRWMS 299
            H N++ + + + LR +S
Sbjct: 821 SHLNKIRILQAKTLRRIS 838


>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
           retrotransposable element R1DM (ORF 2)
          Length = 1021

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 73/271 (26%), Positives = 111/271 (40%), Gaps = 29/271 (10%)

Query: 21  QFGFMPGRLTMEAIYLLRRVIERYRTDKKDLHL-VFIDLEKTYDRVPREILWKALEKKGV 79
           QFGF  GR   +A    R V            L  F+D +  +D V        L   G 
Sbjct: 544 QFGFRQGRCVEDA---WRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGC 600

Query: 80  RIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGVHQGSTLSPYLFTLVLDVLTEHIQEL 139
           R   +   +  + G    +R+  GT E  P+T G  QGS   P+++ +++DVL   +Q L
Sbjct: 601 R--EMGLWQSFFSGRRAVIRSSSGTVE-VPVTRGCPQGSISGPFIWDILMDVL---LQRL 654

Query: 140 APRCML--FADVVLV---GESR---EEVNGRL----ETWRQALEAYGFRLSRSTTEYMEC 187
            P C L  +AD +L+   G SR   EE   +L    ETW   +   G  LS S T  M  
Sbjct: 655 QPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEV---GDCLSTSKTVIMLL 711

Query: 188 NFSGRRSRSTLEVKVGDHIIPQVTRFKYLGSFV*NDGEIEADV-SHRIQAEWLKWRRASG 246
             + RR+ +   V+     +P V   +YLG  V    +    + S R +   +    A  
Sbjct: 712 KGALRRAPT---VRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARV 768

Query: 247 VLCDKKVPLKLKGKFYRTAVRPALLYGTECW 277
           +  D     + +   Y   + P +L+G   W
Sbjct: 769 LRADWGFSPRARRTIYDGLMAPCVLFGAPVW 799


>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 869

 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 34/128 (26%), Positives = 59/128 (45%), Gaps = 1/128 (0%)

Query: 3   WERVIERRLRKEARVTDNQFGFMPGRLTMEAIYLLRRVIERYRTDKKDLHLVFIDLEKTY 62
           + +++ RR        + Q  ++P       + +L  +I   +  +K+LH+  +DL K +
Sbjct: 243 FNKILARRFVSCYTYDERQTAYLPIDGVCINVSMLTAIIAEAKRLRKELHIAILDLVKAF 302

Query: 63  DRVPREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGVHQGSTLSP 122
           + V    L  A+ + G     +  I DMY    T ++  +G  E   I  GV+QG  LS 
Sbjct: 303 NSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQF-EGKCELASILAGVYQGDPLSG 361

Query: 123 YLFTLVLD 130
            LFTL  +
Sbjct: 362 PLFTLAYE 369


>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
           (ORF 2)
          Length = 1308

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 29/106 (27%), Positives = 49/106 (45%)

Query: 25  MPGRLTMEAIYLLRRVIERYRTDKKDLHLVFIDLEKTYDRVPREILWKALEKKGVRIAYI 84
           +PGR   + ++L+R ++   R     L  + +D EK +DRV  + L   L+       ++
Sbjct: 562 VPGRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFV 621

Query: 85  RAIKDMYEGASTSVRTQDGTTEDFPITIGVHQGSTLSPYLFTLVLD 130
             +K MY  A   V+     T       GV QG  LS  L++L ++
Sbjct: 622 GYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIE 667


>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
          Length = 1222

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 42/156 (26%), Positives = 73/156 (45%), Gaps = 6/156 (3%)

Query: 1   KLWERVIERRLRKEAR--VTDNQFGFMPGRLTMEAIYLLRRVIERYRTDKKDLHLVFIDL 58
           ++ ER+I  R+R E    ++ +Q GF+  R    ++     +      ++K L ++F D 
Sbjct: 696 RIMERIICSRIRSEYSHLLSPHQHGFLNFRSCPSSLVRSISLYHSILKNEKSLDILFFDF 755

Query: 59  EKTYDRVPREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTED-FPITIGVHQG 117
            K +D+V   IL K L   G+        K+     + SV+     + + +PI+ GV QG
Sbjct: 756 AKAFDKVSHPILLKKLALFGLDKLTCSWFKEFLHLRTFSVKINKFVSSNAYPISSGVPQG 815

Query: 118 STLSPYLFTLVL-DVLTEHIQELAPRCMLFADVVLV 152
           S   P LF L + D+L +    +   C  FAD + +
Sbjct: 816 SVSGPLLFILFINDLLIDLEPNIHVSC--FADDIKI 849


>YSM6_CAEEL (Q10126) Hypothetical protein F52C9.6 in chromosome III
          Length = 279

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 12/199 (6%)

Query: 148 DVVLVGESREEVNGRLETWRQALEAYGFRLSRSTTEYMECNFSGRRSRSTLEVKVGDHII 207
           D+VL+       +  L+   Q     G  ++   T+ +  N     S+           +
Sbjct: 16  DIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKVLR-NRLADPSKVYFGSPSSTTQL 74

Query: 208 PQVTRFKYLGSFV*NDGEIEADVSHRIQAEWLKW---RRASGVLCDKKVPLKLKGKFYRT 264
             V  + YLG  +     +  ++  R +A W  +   +  +  + DKK+ + L    + +
Sbjct: 75  DDVDEYIYLGRQINAHNNLMPEIHRRRRAAWAAFNGSKNTTDSITDKKIRVNL----FDS 130

Query: 265 AVRPALLYGTECWAVKSQHENQVSVAEMRMLRWMSRKTRHDRIKNDTIRERVGVAPIVEK 324
            V PAL YG+E W        +V +    + R +   T   + + D  RE + V   V  
Sbjct: 131 IVLPALTYGSEAWTFNKALSERVRITHASLERRLVGITLTQQRERDLHREDIRVMSQVRD 190

Query: 325 ----LVENRLR*FGHVERR 339
               + + +L   GHV RR
Sbjct: 191 PLNFVKKRKLGWAGHVARR 209


>YO84_CAEEL (P34620) Hypothetical protein ZK1236.4 in chromosome III
          Length = 364

 Score = 40.0 bits (92), Expect = 0.009
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 38  RRVIERYRTDKKDLHLVFIDLEKTYDRVPREILWKALEKKGVRIAYIRAIKDMYEGASTS 97
           + + E  +TD K     ++D  K +D+V  +IL   L    +    IR +       S  
Sbjct: 10  KNIDEGAQTDVK-----YLDFSKAFDKVSHDILLDKLTSIKINKHLIRWLDVFLTNRSFK 64

Query: 98  VRTQDGTTEDFPITIGVHQGSTLSPYLFTLVLDVLTEHIQELAPRCMLFAD 148
           V+  +  +E      GV QGS +SP LF + ++ ++ ++  +   C  FAD
Sbjct: 65  VKVGNTLSEPKKTVCGVPQGSVISPVLFGIFVNEISANL-PVGVYCKQFAD 114


>AI2M_YEAST (P03876) Putative COX1/OXI3 intron 2 protein
          Length = 789

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 27/140 (19%), Positives = 56/140 (39%), Gaps = 17/140 (12%)

Query: 4   ERVIERRLRKEARVTDNQ------FGFMPGRLTMEAIYLLRRVIERYRTDKKDLHLVFID 57
           E++++  +R    +  N        GF P    + AI   +  ++           + +D
Sbjct: 300 EKIVQESMRMMLEIIYNNSFSYYSHGFRPNLSCLTAIIQCKNYMQYCNW------FIKVD 353

Query: 58  LEKTYDRVPREILWKALEKKGVRIAYIRAIKDMYEGASTSVRTQDGTTEDFPITIGVHQG 117
           L K +D +P  +L   L ++     ++  +  +              T     T+G+ QG
Sbjct: 354 LNKCFDTIPHNMLINVLNERIKDKGFMDLLYKLLRAGYVDKNNNYHNT-----TLGIPQG 408

Query: 118 STLSPYLFTLVLDVLTEHIQ 137
           S +SP L  + LD L ++++
Sbjct: 409 SVVSPILCNIFLDKLDKYLE 428


>RTP2_TRYBG (P15594) Retrotransposable element SLACS 132 kDa protein
           (ORF2)
          Length = 1182

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 23/78 (29%), Positives = 33/78 (41%), Gaps = 2/78 (2%)

Query: 111 TIGVHQGSTLSPYLFTLVLDVLTEHIQELAPRCML--FADVVLVGESREEVNGRLETWRQ 168
           T GV QG  L P LF++        +Q+  P      + D V V    EE+        +
Sbjct: 702 TRGVRQGMVLGPLLFSIGTLATLRRLQQTFPEAQFTAYLDDVTVAAPPEELKNVCAATAE 761

Query: 169 ALEAYGFRLSRSTTEYME 186
           A+EA G   +   TE +E
Sbjct: 762 AMEALGIVNNADKTEVLE 779


>POL_BIV27 (P19561) Pol polyprotein [Contains: Protease (EC
           3.4.23.-) (P119) (Retropepsin); Reverse
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT) (P72); Integrase (IN)]
          Length = 1056

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 21/78 (26%), Positives = 41/78 (51%), Gaps = 3/78 (3%)

Query: 101 QDGTTEDFPITIGVHQGSTLSPYLFTLVLDVLTEHIQELAPRCMLFA--DVVLVGESREE 158
           ++G  E F   + + QG   SP ++      + E+I++  P  ML+   D +L+G +R++
Sbjct: 293 REGPIERFQWNV-LPQGWVCSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSNRDD 351

Query: 159 VNGRLETWRQALEAYGFR 176
               ++  R  L +YGF+
Sbjct: 352 HKQIVQEIRDKLGSYGFK 369


>POL_BIV06 (P19560) Pol polyprotein [Contains: Protease (EC
           3.4.23.-) (P119) (Retropepsin); Reverse
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT) (P72); Integrase (IN)]
          Length = 1056

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 21/78 (26%), Positives = 41/78 (51%), Gaps = 3/78 (3%)

Query: 101 QDGTTEDFPITIGVHQGSTLSPYLFTLVLDVLTEHIQELAPRCMLFA--DVVLVGESREE 158
           ++G  E F   + + QG   SP ++      + E+I++  P  ML+   D +L+G +R++
Sbjct: 293 REGPIERFQWNV-LPQGWVCSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSNRDD 351

Query: 159 VNGRLETWRQALEAYGFR 176
               ++  R  L +YGF+
Sbjct: 352 HKQIVQEIRDKLGSYGFK 369


>RUV2_XENLA (Q9DE27) RuvB-like 2 (EC 3.6.1.-) (Reptin)
          Length = 462

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 30/128 (23%), Positives = 58/128 (44%), Gaps = 9/128 (7%)

Query: 119 TLSPYLFTLVLDVLTEHIQELAPRCMLFADVVLVGESREEVN--GRLETWRQALEAYGFR 176
           TL       + D+ T+ I+ L    +   DV+ + ++  ++   GR  T  +  +A G  
Sbjct: 161 TLKTTEMETIYDLGTKMIESLTKEKVQAGDVITIDKATGKITKLGRAFTRARDYDAMG-- 218

Query: 177 LSRSTTEYMECNFSGRRSRSTLEVKVGDHIIPQVTRFK--YLGSFV*NDGEIEADVSHRI 234
              S T++++C     + R  +   V  H I  +      +L  F  + GEI+++V  +I
Sbjct: 219 ---SQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQI 275

Query: 235 QAEWLKWR 242
            A+  +WR
Sbjct: 276 NAKVAEWR 283


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.326    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,665,385
Number of Sequences: 164201
Number of extensions: 1545420
Number of successful extensions: 4585
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4565
Number of HSP's gapped (non-prelim): 35
length of query: 346
length of database: 59,974,054
effective HSP length: 111
effective length of query: 235
effective length of database: 41,747,743
effective search space: 9810719605
effective search space used: 9810719605
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 66 (30.0 bits)