BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144503.7 + phase: 0
(284 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cel... 90 7e-18
WHI3_YEAST (P34761) WHI3 protein 77 5e-14
RBMS_MOUSE (Q9WVB0) RNA-binding protein with multiple splicing (... 77 5e-14
RBMS_HUMAN (Q93062) RNA-binding protein with multiple splicing (... 77 6e-14
RU1A_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snR... 73 9e-13
RBMS_CHICK (Q9W6I1) RNA-binding protein with multiple splicing h... 72 2e-12
RBMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing h... 71 3e-12
CPO_DROME (Q01617) Couch potato protein 68 2e-11
RU1A_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snR... 68 3e-11
RU1A_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snR... 67 4e-11
RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B" 55 2e-07
RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B" 54 4e-07
YP90_MYCBO (P59983) Hypothetical protein Mb2590 47 7e-05
YP60_MYCTU (Q50738) Hypothetical protein Rv2560/MT2637 47 7e-05
RU1A_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snR... 46 9e-05
EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 45 2e-04
S3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome as... 45 3e-04
DAM2_HUMAN (Q86T65) Disheveled associated activator of morphogen... 44 4e-04
Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71) 44 6e-04
NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 43 8e-04
>SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cell
wall protein 1)
Length = 561
Score = 89.7 bits (221), Expect = 7e-18
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 107 AGDYNHTGYVTPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAG--YP--VAQVPMPAPVSI 162
+ + ++ + S P P V+ + + PPP P YP + + P S
Sbjct: 338 SSEKGYSAHTQNSSAQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTPFSA 397
Query: 163 APSSY-----VPIQ---NTK---DNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKI 211
SS+ +P NT NPPCNT+++GNL + +EEE++ LFS Q G+K++
Sbjct: 398 YSSSHGIHQRIPASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCF 457
Query: 212 IRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYSKNPFGKRKDGT 266
+ +CF+EFE++ A NLQG + SS G+R+ +SKNP G R +
Sbjct: 458 RTKGNGPMCFVEFENIPYAMEALKNLQGVCLSSSIKGGIRLSFSKNPLGVRSSSS 512
Score = 31.6 bits (70), Expect = 2.3
Identities = 22/82 (26%), Positives = 33/82 (39%)
Query: 7 TIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDM 66
TI++ LP E EL+ L G++ K PM F F + A+ A LQ +
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV 486
Query: 67 LFDPEAKSVLHTEMAKKNLFVK 88
K + +K L V+
Sbjct: 487 CLSSSIKGGIRLSFSKNPLGVR 508
>WHI3_YEAST (P34761) WHI3 protein
Length = 661
Score = 77.0 bits (188), Expect = 5e-14
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 16/121 (13%)
Query: 169 PIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHT--------VC 220
P NPPCNTL++GNL + E+E+R LFS Q GF+++ R + T +C
Sbjct: 527 PANPADQNPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLS-FRNKNTTSNGHSHGPMC 585
Query: 221 FIEFEDVNSATNVHHNLQGAVIPS---SGSIGMRIQYSKNPFGKRKDGTYPMAVPGANGA 277
F+EF+DV+ AT L G +P S G+R+ +SKNP G R P + G +G
Sbjct: 586 FVEFDDVSFATRALAELYGRQLPRSTVSSKGGIRLSFSKNPLGVRG----PNSRRGGSGN 641
Query: 278 P 278
P
Sbjct: 642 P 642
>RBMS_MOUSE (Q9WVB0) RNA-binding protein with multiple splicing
(RBP-MS) (HEart, RRM Expressed Sequence) (Hermes)
Length = 197
Score = 77.0 bits (188), Expect = 5e-14
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 4 QVRTIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDIL 63
+VRT+F++GLP D+K REL L R G+E S + +++P+GF F+S +A AAK+ L
Sbjct: 22 EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNAL 81
Query: 64 QDMLFDPEAKSVLHTEMAKKNLFVKRG--IGADAVAFDQSKRLRTAGDYNHTGYVTPSPF 121
+ FDPE L E AK N + + +G + + + P+
Sbjct: 82 NGIRFDPEIPQTLRIEFAKANTKMAKNKLVGTPNPSTPLPNTVPHSVAREPYELTVPA-L 140
Query: 122 HPPPPPVWGPH----GYMAPPPPPP 142
+P P VW P+ +AP PPP
Sbjct: 141 YPSSPEVWAPYPLYPAELAPALPPP 165
>RBMS_HUMAN (Q93062) RNA-binding protein with multiple splicing
(RBP-MS)
Length = 196
Score = 76.6 bits (187), Expect = 6e-14
Identities = 52/159 (32%), Positives = 77/159 (47%), Gaps = 11/159 (6%)
Query: 4 QVRTIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDIL 63
+VRT+F++GLP D+K REL L R G+E S + +++P+GF F+S +A AAK+ L
Sbjct: 22 EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNAL 81
Query: 64 QDMLFDPEAKSVLHTEMAKKNLFVKRG--IGADAVAFDQSKRLRTAGDY--NHTGYVTPS 119
+ FDPE L E AK N + + +G + T + +T
Sbjct: 82 NGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPN---PSTPLPNTVPQFIAREPYELTVP 138
Query: 120 PFHPPPPPVWGPH----GYMAPPPPPPYDPYAGYPVAQV 154
+P P VW P+ +AP PPP Y AQ+
Sbjct: 139 ALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQM 177
>RU1A_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1A protein) (U1-A)
Length = 286
Score = 72.8 bits (177), Expect = 9e-13
Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Query: 114 GYVTPSPFHPPPP--PVWGPHGYMAPP--PPPPYDPYAGYPVAQVPMPA--PVSIAPSSY 167
G V P P PP P P H PP PPP P G Q+P A P + P
Sbjct: 140 GAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQM 199
Query: 168 VPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDV 227
P Q +NPP + LF+ NL E NE + LF+ PGFK+++++ RH + F+EF++
Sbjct: 200 PPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNE 258
Query: 228 NSATNVHHNLQGAVIPSSGSIGMRIQYSK 256
A LQG I + + M+I ++K
Sbjct: 259 VQAGAARDALQGFKITQNNA--MKISFAK 285
Score = 40.8 bits (94), Expect = 0.004
Identities = 30/94 (31%), Positives = 50/94 (52%), Gaps = 11/94 (11%)
Query: 168 VPIQNTKDNPPCNTLFIGNLGENINEEEVR-GLFSVQPGFKQMKIIRQER----HTVCFI 222
+P+ T+ N +T++I NL E I ++E++ L+++ F Q+ I R F+
Sbjct: 6 MPVPETRAN---HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFV 62
Query: 223 EFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYSK 256
F++V SATN ++QG MRIQY+K
Sbjct: 63 IFKEVTSATNALRSMQGFPFYDK---PMRIQYAK 93
Score = 35.4 bits (80), Expect = 0.16
Identities = 25/76 (32%), Positives = 36/76 (46%), Gaps = 3/76 (3%)
Query: 8 IFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDML 67
+F+T LPE+ E L L PGF+ +L + F F++ QA AA+D LQ
Sbjct: 214 LFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFDNEVQAGAARDALQG-- 270
Query: 68 FDPEAKSVLHTEMAKK 83
F + + AKK
Sbjct: 271 FKITQNNAMKISFAKK 286
>RBMS_CHICK (Q9W6I1) RNA-binding protein with multiple splicing
homolog (RBP-MS) (HEart, RRM Expressed Sequence)
(Hermes)
Length = 200
Score = 72.0 bits (175), Expect = 2e-12
Identities = 57/194 (29%), Positives = 81/194 (41%), Gaps = 31/194 (15%)
Query: 4 QVRTIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDIL 63
+VRT+F++GLP D+K REL L R G+E S + +++P+GF F+S A AAK+ L
Sbjct: 20 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAEAAKNAL 79
Query: 64 QDMLFDPEAKSVLHTEMAKKNLFVKR--------------GIGADAVAFDQSKRLRTAGD 109
+ FDPE L E AK N + + +GA +A D
Sbjct: 80 NGIRFDPENPQTLRLEFAKANTKMAKSKLMATPNPTNIHPALGAHFIARD---------P 130
Query: 110 YNHTGYVTPSPFHPPPPPVWGPHGY----MAPPPPPPYDPYAGYPVAQVPMPAPVSIAPS 165
Y+ TG + P P W P+ + P P Y A + A + P
Sbjct: 131 YDLTG----AALIPASPEAWAPYPLYTTELTPAIPHAAFTYPAAAAAAAALHAQMRWYPP 186
Query: 166 SYVPIQNTKDNPPC 179
S Q K C
Sbjct: 187 SEATQQGWKSRQFC 200
>RBMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing
homolog (RBP-MS) (HEart, RRM Expressed Sequence)
(Hermes)
Length = 196
Score = 70.9 bits (172), Expect = 3e-12
Identities = 57/192 (29%), Positives = 83/192 (42%), Gaps = 29/192 (15%)
Query: 4 QVRTIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDIL 63
+VRT+F++GLP D+K REL L R G+E S + +++P+GF F++ A AAK+ L
Sbjct: 18 EVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDNRAGAEAAKNAL 77
Query: 64 QDMLFDPEAKSVLHTEMAKKNLFVKR--------------GIGADAVAFDQSKRLRTAGD 109
+ FDPE L E AK N + + +GA +A D
Sbjct: 78 NGIRFDPENPQTLRLEFAKANTKMAKNKLMATPNPTNFHPALGAHFIARD---------P 128
Query: 110 YNHTGYVTPSPFHPPPPPVWGPHG-YMAP-PPPPPYDPYAGYPVAQVPMPAPVSIAPSSY 167
Y+ TG + P P W P+ Y A P P+ + A + A + P S
Sbjct: 129 YDFTG----AALIPASPEAWAPYPLYTAELAPAIPHAAFTYPAAAAAALHAQMRWYPPSE 184
Query: 168 VPIQNTKDNPPC 179
Q K C
Sbjct: 185 ATQQGWKSRQFC 196
>CPO_DROME (Q01617) Couch potato protein
Length = 738
Score = 68.2 bits (165), Expect = 2e-11
Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 4 QVRTIFITGLPEDVKERELQNLCRWLPGFEASQL-----NFKAEKPMGFALFNSPHQAIA 58
+VRT+F++GLP D K REL L R G+E S L N K P+GF F++ A A
Sbjct: 449 EVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEA 508
Query: 59 AKDILQDMLFDPEAKSVLHTEMAKKNLFVKRGIGADAVAFDQSKRLRTAGDYNHTGYVTP 118
AK LQ + FDP+ + E AK N V + + TA +H + P
Sbjct: 509 AKQDLQGVRFDPDMPQTIRLEFAKSNTKVSK----------PKPQPNTATTASHPALMHP 558
Query: 119 ------SPFHPPPPPVW 129
PF P P +W
Sbjct: 559 LTGHLGGPFFPGGPELW 575
Score = 38.9 bits (89), Expect = 0.014
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 176 NPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQ 214
N PC+TLF+ NLG+ ++E E++ +FS +K++ Q
Sbjct: 700 NAPCSTLFVANLGQFVSEHELKEVFSSHGNSNWLKLLHQ 738
>RU1A_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1A protein) (U1-A)
Length = 281
Score = 67.8 bits (164), Expect = 3e-11
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 122 HPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPA--PVSIAPSSYVPIQNTKDNPPC 179
H P P + P M PPP G Q+P A P + P P Q +NPP
Sbjct: 155 HMPGQPPYMPPPGMIPPP--------GLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPN 206
Query: 180 NTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVHHNLQG 239
+ LF+ NL E NE + LF+ PGFK+++++ RH + F+EF++ A LQG
Sbjct: 207 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAARDALQG 265
Query: 240 AVIPSSGSIGMRIQYSK 256
I + + M+I ++K
Sbjct: 266 FKITQNNA--MKISFAK 280
Score = 40.0 bits (92), Expect = 0.006
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 178 PCNTLFIGNLGENINEEEVR-GLFSVQPGFKQMKIIRQERHTV----CFIEFEDVNSATN 232
P +T++I NL E I ++E++ L+++ F Q+ I R F+ F++V+SATN
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 233 VHHNLQGAVIPSSGSIGMRIQYSK 256
++QG MRIQY+K
Sbjct: 67 ALRSMQGFPFYDK---PMRIQYAK 87
Score = 35.4 bits (80), Expect = 0.16
Identities = 25/76 (32%), Positives = 36/76 (46%), Gaps = 3/76 (3%)
Query: 8 IFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDML 67
+F+T LPE+ E L L PGF+ +L + F F++ QA AA+D LQ
Sbjct: 209 LFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFDNEVQAGAARDALQG-- 265
Query: 68 FDPEAKSVLHTEMAKK 83
F + + AKK
Sbjct: 266 FKITQNNAMKISFAKK 281
>RU1A_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1A protein) (U1-A)
Length = 282
Score = 67.4 bits (163), Expect = 4e-11
Identities = 44/127 (34%), Positives = 64/127 (49%), Gaps = 13/127 (10%)
Query: 132 HGYMAPPP--PPPYDPYAGYPVAQVPMPAPVSIAPSSYVPIQNTKDNPPCNTLFIGNLGE 189
H M PPP P P G P Q + P P+Q +NPP + LF+ NL E
Sbjct: 166 HPGMMPPPGMAPGQMPPGGMPHGQ--------LMPGQMAPMQPISENPPNHILFLTNLPE 217
Query: 190 NINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIG 249
NE + LF+ PGFK+++++ RH + F+EF++ A +LQG I S S
Sbjct: 218 ETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFDNEVQAGAARESLQGFKITQSNS-- 274
Query: 250 MRIQYSK 256
M+I ++K
Sbjct: 275 MKISFAK 281
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 178 PCNTLFIGNLGENINEEEVR-GLFSVQPGFKQMKIIRQERHTV----CFIEFEDVNSATN 232
P NT++I NL E I ++E++ L+++ F Q+ I R+ F+ F++ +SATN
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSATN 67
Query: 233 VHHNLQGAVIPSSGSIGMRIQYSK 256
++QG MRIQYSK
Sbjct: 68 ALRSMQGFPFYDK---PMRIQYSK 88
Score = 33.1 bits (74), Expect = 0.79
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 8 IFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQ 64
+F+T LPE+ E L L PGF+ +L + F F++ QA AA++ LQ
Sbjct: 210 LFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFDNEVQAGAARESLQ 265
>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"
Length = 225
Score = 55.1 bits (131), Expect = 2e-07
Identities = 36/94 (38%), Positives = 51/94 (53%), Gaps = 8/94 (8%)
Query: 163 APSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFI 222
AP+ VP D PP LF+ NL E NE + LF+ PGFK+++++ RH + F+
Sbjct: 139 APNPQVP-----DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFV 192
Query: 223 EFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYSK 256
EFE+ A LQG I S + M+I Y+K
Sbjct: 193 EFENDGQAGAARDALQGFKITPSHA--MKITYAK 224
Score = 37.4 bits (85), Expect = 0.042
Identities = 31/92 (33%), Positives = 48/92 (51%), Gaps = 18/92 (19%)
Query: 175 DNPPCNTLFIGNLGENINEEEV-RGLFSVQPGF---------KQMKIIRQERHTVCFIEF 224
D P +T++I N+ + I +EE+ R L+++ F K MK+ Q F+ F
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQ-----AFVIF 56
Query: 225 EDVNSATNVHHNLQGAVIPSSGSIGMRIQYSK 256
+++ S+TN LQG P G MRIQY+K
Sbjct: 57 KELGSSTNALRQLQG--FPFYGK-PMRIQYAK 85
Score = 34.7 bits (78), Expect = 0.27
Identities = 21/63 (33%), Positives = 29/63 (45%), Gaps = 1/63 (1%)
Query: 8 IFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDML 67
+F+ LPE+ E L L PGF+ +L + F F + QA AA+D LQ
Sbjct: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFENDGQAGAARDALQGFK 211
Query: 68 FDP 70
P
Sbjct: 212 ITP 214
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"
Length = 225
Score = 53.9 bits (128), Expect = 4e-07
Identities = 33/88 (37%), Positives = 47/88 (52%), Gaps = 3/88 (3%)
Query: 169 PIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVN 228
P D PP LF+ NL E NE + LF+ PGFK+++++ RH + F+EFE+
Sbjct: 140 PNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDG 198
Query: 229 SATNVHHNLQGAVIPSSGSIGMRIQYSK 256
A LQG I S + M+I Y+K
Sbjct: 199 QAGAARDALQGFKITPSHA--MKITYAK 224
Score = 37.4 bits (85), Expect = 0.042
Identities = 31/92 (33%), Positives = 48/92 (51%), Gaps = 18/92 (19%)
Query: 175 DNPPCNTLFIGNLGENINEEEV-RGLFSVQPGF---------KQMKIIRQERHTVCFIEF 224
D P +T++I N+ + I +EE+ R L+++ F K MK+ Q F+ F
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQ-----AFVIF 56
Query: 225 EDVNSATNVHHNLQGAVIPSSGSIGMRIQYSK 256
+++ S+TN LQG P G MRIQY+K
Sbjct: 57 KELGSSTNALRQLQG--FPFYGK-PMRIQYAK 85
Score = 34.7 bits (78), Expect = 0.27
Identities = 21/63 (33%), Positives = 29/63 (45%), Gaps = 1/63 (1%)
Query: 8 IFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDML 67
+F+ LPE+ E L L PGF+ +L + F F + QA AA+D LQ
Sbjct: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFENDGQAGAARDALQGFK 211
Query: 68 FDP 70
P
Sbjct: 212 ITP 214
>YP90_MYCBO (P59983) Hypothetical protein Mb2590
Length = 325
Score = 46.6 bits (109), Expect = 7e-05
Identities = 24/51 (47%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 107 AGDYNHTGYVTPSP--FHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVP 155
AG Y GY P P + PPP + P GY APPPPP Y P G P P
Sbjct: 21 AGSYPPPGYGAPPPPPGYGPPPGTYLPPGYNAPPPPPGYGPPPGPPPPGYP 71
>YP60_MYCTU (Q50738) Hypothetical protein Rv2560/MT2637
Length = 325
Score = 46.6 bits (109), Expect = 7e-05
Identities = 24/51 (47%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 107 AGDYNHTGYVTPSP--FHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVP 155
AG Y GY P P + PPP + P GY APPPPP Y P G P P
Sbjct: 21 AGSYPPPGYGAPPPPPGYGPPPGTYLPPGYNAPPPPPGYGPPPGPPPPGYP 71
>RU1A_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP
protein A) (U1-A) (Sex determination protein snf)
Length = 216
Score = 46.2 bits (108), Expect = 9e-05
Identities = 27/82 (32%), Positives = 44/82 (52%), Gaps = 3/82 (3%)
Query: 175 DNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVH 234
+ PP LF+ NL E NE + LF+ PGFK+++++ RH + F+EF +
Sbjct: 137 EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVEFTTELQSNAAK 195
Query: 235 HNLQGAVIPSSGSIGMRIQYSK 256
LQG I + + M+I ++K
Sbjct: 196 EALQGFKITPTHA--MKITFAK 215
Score = 34.3 bits (77), Expect = 0.36
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 8 IFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDML 67
+F+T LPE+ E L L PGF+ +L + F F + Q+ AAK+ LQ
Sbjct: 144 LFLTNLPEETNEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFTTELQSNAAKEALQGFK 202
Query: 68 FDP 70
P
Sbjct: 203 ITP 205
Score = 34.3 bits (77), Expect = 0.36
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 178 PCNTLFIGNLGENINEEEVR-GLFSVQPGFKQMKII----RQERHTVCFIEFEDVNSATN 232
P T++I NL E I +EE++ L+++ F Q+ I + F+ F+++ SA+N
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 233 VHHNLQGAVIPSSGSIGMRIQYSKN 257
+QG M+I YSK+
Sbjct: 65 ALRTMQGFPFYDK---PMQIAYSKS 86
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall
hydroxyproline-rich glycoprotein)
Length = 620
Score = 45.1 bits (105), Expect = 2e-04
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 119 SPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAPSSYVPIQNTKDNPP 178
SP + PPPPV+ +PPPPP Y P P +P P P S P S+ P T + P
Sbjct: 343 SPIYSPPPPVY------SPPPPPSYSP---PPPTYLPPPPPSSPPPPSFSPPPPTYEQSP 393
Score = 44.3 bits (103), Expect = 3e-04
Identities = 24/62 (38%), Positives = 28/62 (44%), Gaps = 1/62 (1%)
Query: 117 TPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAPSSYVPIQNTKDN 176
TP+P PPPP + P + PPPP Y P P+ P P P SY P T
Sbjct: 312 TPTPTFSPPPPAYSPPPTYS-PPPPTYLPLPSSPIYSPPPPVYSPPPPPSYSPPPPTYLP 370
Query: 177 PP 178
PP
Sbjct: 371 PP 372
Score = 43.5 bits (101), Expect = 6e-04
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 115 YVTPSPFHPPPPPVWGPHG---YMAPPPPPPYDPYAGYPVAQVPMPAPVSIAPSSYV--- 168
Y+ P P PPPP + P +PPPPP Y P P P P S P +Y
Sbjct: 368 YLPPPPPSSPPPPSFSPPPPTYEQSPPPPPAYSPPLPAPPTYSPPPPTYSPPPPTYAQPP 427
Query: 169 PIQNTKDNPP 178
P+ T PP
Sbjct: 428 PLPPTYSPPP 437
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/72 (36%), Positives = 31/72 (42%), Gaps = 13/72 (18%)
Query: 118 PSPFHPPPPPVWG---------PHGYMAPPPPPP-YDPYAGYPVAQVPMPAPV-SIAPSS 166
P + PPPPP + P Y PPPPPP Y P P P P+P+ S P
Sbjct: 437 PPAYSPPPPPTYSPPPPTYSPPPPAYAQPPPPPPTYSPPP--PAYSPPPPSPIYSPPPPQ 494
Query: 167 YVPIQNTKDNPP 178
P+ T PP
Sbjct: 495 VQPLPPTFSPPP 506
Score = 42.4 bits (98), Expect = 0.001
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 118 PSPFHPPPPPVWGPHGYMAP-----PPPPPYDP---YAGYPVAQVPMP-APV-SIAPSSY 167
PSP + PPPP + P P PPPP Y P Y+ P +P+P +P+ S P Y
Sbjct: 294 PSPIYSPPPPAYSPSPPPTPTPTFSPPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPVY 353
Query: 168 VPIQNTKDNPP 178
P +PP
Sbjct: 354 SPPPPPSYSPP 364
Score = 40.0 bits (92), Expect = 0.006
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 118 PSPFHPPPPPVWGPH--GYMAPPPPPP--------YDPYAGYPVAQVPMPAPVSIAPSSY 167
P P + PPPP + P Y PPPPPP Y P P+ P P + P+
Sbjct: 444 PPPTYSPPPPTYSPPPPAYAQPPPPPPTYSPPPPAYSPPPPSPIYSPPPPQVQPLPPTFS 503
Query: 168 VPIQNTKDNPP 178
P PP
Sbjct: 504 PPPPRRIHLPP 514
Score = 38.9 bits (89), Expect = 0.014
Identities = 25/65 (38%), Positives = 28/65 (42%), Gaps = 8/65 (12%)
Query: 115 YVTPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPV-SIAPSSYVPIQNT 173
Y P P + PPPP Y PPP PP Y+ P A P P P S P +Y P
Sbjct: 409 YSPPPPTYSPPPPT-----YAQPPPLPP--TYSPPPPAYSPPPPPTYSPPPPTYSPPPPA 461
Query: 174 KDNPP 178
PP
Sbjct: 462 YAQPP 466
Score = 38.9 bits (89), Expect = 0.014
Identities = 29/75 (38%), Positives = 34/75 (44%), Gaps = 11/75 (14%)
Query: 115 YVTPSP-FHPPPPPVWG--PHGYMAPPPP--PP----YDPYAGYPVAQVPMPA--PVSIA 163
Y P P + PPPPP + P Y+ PPPP PP P Y + P PA P A
Sbjct: 346 YSPPPPVYSPPPPPSYSPPPPTYLPPPPPSSPPPPSFSPPPPTYEQSPPPPPAYSPPLPA 405
Query: 164 PSSYVPIQNTKDNPP 178
P +Y P T PP
Sbjct: 406 PPTYSPPPPTYSPPP 420
Score = 38.5 bits (88), Expect = 0.019
Identities = 23/64 (35%), Positives = 28/64 (42%), Gaps = 9/64 (14%)
Query: 118 PSPFHPPPPPVWGPH--GYMAPPPPPPYDPYAGYPVAQVPMPAPV-SIAPSSYVPIQNTK 174
PSP + PPPP + P + PPPP Y P + P P P S P +Y P
Sbjct: 278 PSPTYSPPPPTYSPPPPSPIYSPPPPAYSP------SPPPTPTPTFSPPPPAYSPPPTYS 331
Query: 175 DNPP 178
PP
Sbjct: 332 PPPP 335
Score = 37.7 bits (86), Expect = 0.032
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 118 PSPFHPPPPPVWGPH----GYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAPSSYVPIQNT 173
P H PPPP W P Y PP PP ++ P Q+ P P P P
Sbjct: 541 PRQIHSPPPPHWQPRTPTPTYGQPPSPP---TFSAPPPRQIHSPPPPHRQPRPPTPTYGQ 597
Query: 174 KDNPP 178
+PP
Sbjct: 598 PPSPP 602
Score = 35.0 bits (79), Expect = 0.21
Identities = 23/65 (35%), Positives = 26/65 (39%), Gaps = 4/65 (6%)
Query: 118 PSPFHPPP---PPVWGPHGYMAPPPPPPY-DPYAGYPVAQVPMPAPVSIAPSSYVPIQNT 173
P P + PP PP + P PPPP Y P P P PA P +Y P T
Sbjct: 395 PPPAYSPPLPAPPTYSPPPPTYSPPPPTYAQPPPLPPTYSPPPPAYSPPPPPTYSPPPPT 454
Query: 174 KDNPP 178
PP
Sbjct: 455 YSPPP 459
Score = 34.3 bits (77), Expect = 0.36
Identities = 23/75 (30%), Positives = 30/75 (39%), Gaps = 10/75 (13%)
Query: 114 GYVTPSPFHPPP---PPVWGPHGYMAPP---PPPPYDPYAGYPVAQVP----MPAPVSIA 163
G+ P HPP P HG+ PP PPP Y+ P Q P P P +
Sbjct: 154 GHTPPRGQHPPSHRRPSPPSRHGHPPPPTYAQPPPTPIYSPSPQVQPPPTYSPPPPTHVQ 213
Query: 164 PSSYVPIQNTKDNPP 178
P+ P + + PP
Sbjct: 214 PTPSPPSRGHQPQPP 228
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/71 (30%), Positives = 29/71 (39%), Gaps = 6/71 (8%)
Query: 117 TPSPFHPPPPPVWG--PHGYMAPPPPPPYDPYAGYPV-AQVPMPAPVSIAPSSYV---PI 170
TP+ PP PP + P + PPPP + P P Q P P S P + P
Sbjct: 524 TPTYGQPPSPPTFSPPPPRQIHSPPPPHWQPRTPTPTYGQPPSPPTFSAPPPRQIHSPPP 583
Query: 171 QNTKDNPPCNT 181
+ + PP T
Sbjct: 584 PHRQPRPPTPT 594
Score = 32.0 bits (71), Expect = 1.8
Identities = 18/61 (29%), Positives = 24/61 (38%), Gaps = 10/61 (16%)
Query: 118 PSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAPSSYVPIQNTKDNP 177
PSP + PPPP P PP + P P ++ +P P P P +P
Sbjct: 484 PSPIYSPPPP-------QVQPLPPTFSP---PPPRRIHLPPPPHRQPRPPTPTYGQPPSP 533
Query: 178 P 178
P
Sbjct: 534 P 534
Score = 30.4 bits (67), Expect = 5.1
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 112 HTGYVTPSP-FHPPPPPVWGPH----GYMAPPP 139
H G++ PS F+PPP PV P Y APPP
Sbjct: 95 HRGHLPPSRGFNPPPSPVISPSHPPPSYGAPPP 127
Score = 30.0 bits (66), Expect = 6.7
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 110 YNHTGYVTPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAPSSYVP 169
Y+ + V P P + PPPP ++ P P PP + P P AP ++ P
Sbjct: 192 YSPSPQVQPPPTYSPPPPT-----HVQPTPSPPSRGHQPQPPTHRHAPPTHRHAPPTHQP 246
>S3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit)
Length = 424
Score = 44.7 bits (104), Expect = 3e-04
Identities = 23/53 (43%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 114 GYVTPSPFHPP--PPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIAP 164
G+ P P H PPP+ PHGY PP PPPY GY +P P P P
Sbjct: 363 GHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPY----GYQRGPLPPPRPTPRPP 411
Score = 33.9 bits (76), Expect = 0.46
Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 125 PPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSIA----PSSYVP 169
PPP P G PP PPP G P A P P P A PS+ P
Sbjct: 233 PPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
Score = 30.0 bits (66), Expect = 6.7
Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 114 GYVTPSPFHPP-PPPVWGPHGYMAPPPPPPYDPYA---GYPVAQVP 155
G P F PP PPP P G PPPP P A G P A P
Sbjct: 236 GMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
>DAM2_HUMAN (Q86T65) Disheveled associated activator of
morphogenesis 2
Length = 1068
Score = 43.9 bits (102), Expect = 4e-04
Identities = 39/131 (29%), Positives = 56/131 (41%), Gaps = 15/131 (11%)
Query: 116 VTPSPFHPPPPPVWGPHGYMAPPPPPPY------DPYAGYPVAQVPMPAPVSIAPSSYVP 169
+T + PPPPP+ P PPPPPP P P + +P P PSS VP
Sbjct: 535 MTTNDLPPPPPPL--PFACCPPPPPPPLPPGGPPTPPGAPPCLGMGLPLPQDPYPSSDVP 592
Query: 170 IQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNS 229
++ + P + L N +NEE V G +V M++ R + +FE + S
Sbjct: 593 LRKKRVPQPSHPLKSFN-WVKLNEERVPG--TVWNEIDDMQVFR----ILDLEDFEKMFS 645
Query: 230 ATNVHHNLQGA 240
A H G+
Sbjct: 646 AYQRHQKELGS 656
>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)
Length = 875
Score = 43.5 bits (101), Expect = 6e-04
Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 109 DYNHTGYVTPSPFHPPPPPVWGPHGY---MAPPPPPPYDPYAGYPVAQVPMPAPVSIAPS 165
DYN G + PF PPPP + P+G PP PPP P P Q P P
Sbjct: 75 DYNVGGAL---PFQPPPPQPFYPYGQYWPQQPPQPPPDQPQQPQPPQQPPQQPPQQQPQP 131
Query: 166 SYVPIQNTK-DNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKI 211
P Q + PP L + E ++ +EVR L ++Q +Q I
Sbjct: 132 PQPPQQPPQPPQPPPQQLALVQQIE-LSVDEVRELQALQLNMQQQTI 177
>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1
Length = 529
Score = 43.1 bits (100), Expect = 8e-04
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 113 TGYVTPSPFHPPPPPVWGPHGY---MAPPPPPPYDPYAGYPVAQVPMPAPVSIAPSSYVP 169
TG + SPF P HG P P GY V++V P + AP Y P
Sbjct: 47 TGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTSPNVANFAP-GYFP 105
Query: 170 IQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNS 229
+ N P T+++GNL N +E+ L V+ G + I E++ FI F D +
Sbjct: 106 LPN-NTTQPVKTVYVGNLPPNTPIDEI--LSCVRTGPIESAWILPEKN-CAFISFLDPSH 161
Query: 230 AT 231
AT
Sbjct: 162 AT 163
Score = 35.0 bits (79), Expect = 0.21
Identities = 30/97 (30%), Positives = 43/97 (43%), Gaps = 13/97 (13%)
Query: 148 GYPVAQVPMPAPVSIAPSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFK 207
GYPV P P+PV P + T++IGN+ + EE+ +V+ G
Sbjct: 299 GYPVMGYPPPSPVLQKPDLIMTGN--------RTVYIGNIHADTTIEEICN--AVRGGLL 348
Query: 208 QMKIIRQERHTVCFIEFEDVNSATNVHH--NLQGAVI 242
QE+H +CF+ F D SA N+ G VI
Sbjct: 349 HNIRYLQEKH-ICFVTFVDPVSAFRFFEMSNIHGLVI 384
Score = 30.8 bits (68), Expect = 3.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 179 CNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSA 230
C +F+GNL I E+E+R Q+KI+ + + F+ F ++ +A
Sbjct: 205 CRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTE--RNIAFVHFLNIAAA 254
Score = 29.6 bits (65), Expect = 8.8
Identities = 28/123 (22%), Positives = 50/123 (39%), Gaps = 16/123 (13%)
Query: 6 RTIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQD 65
R +F+ LP + E E++ P Q+ E+ + F F + AI A +Q+
Sbjct: 206 RNVFLGNLPNGITEDEIREDLE--PFGPIDQIKIVTERNIAFVHFLNIAAAIKA---VQE 260
Query: 66 MLFDPEAKSVLHTEMAKKNLFVKR---GIGADAVAFDQSKRLRTAGDYNHTGYVTPSPFH 122
+ +P+ +K+ ++ R +G A+ ++ G Y GY PSP
Sbjct: 261 LPLNPK--------WSKRRIYYGRDRCAVGLKQPAYFSKGQVGVVGGYPVMGYPPPSPVL 312
Query: 123 PPP 125
P
Sbjct: 313 QKP 315
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,806,999
Number of Sequences: 164201
Number of extensions: 2015980
Number of successful extensions: 17342
Number of sequences better than 10.0: 572
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 388
Number of HSP's that attempted gapping in prelim test: 10658
Number of HSP's gapped (non-prelim): 3149
length of query: 284
length of database: 59,974,054
effective HSP length: 109
effective length of query: 175
effective length of database: 42,076,145
effective search space: 7363325375
effective search space used: 7363325375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144503.7