BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144481.12 - phase: 0 /pseudo
(72 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SOC1_ARATH (O64645) SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 prot... 67 1e-11
AGL6_ARATH (P29386) Agamous-like MADS box protein AGL6 63 1e-10
AG19_ARATH (O82743) Agamous-like MADS box protein AGL19 62 4e-10
AP3_ARATH (P35632) Floral homeotic protein APETALA3 60 8e-10
AG1Y_ARATH (Q9SZJ6) Agamous-like MADS box protein At4g37940 59 2e-09
AG11_ARATH (Q38836) Agamous-like MADS box protein AGL11 59 2e-09
GLOB_TOBAC (Q03416) Floral homeotic protein GLOBOSA 59 3e-09
AG_PANGI (Q40872) Floral homeotic protein AGAMOUS (GAG2) 58 5e-09
AG_TOBAC (Q43585) Floral homeotic protein AGAMOUS (NAG1) 57 7e-09
AG_PETHY (Q40885) Floral homeotic protein AGAMOUS (pMADS3) 57 7e-09
AG_LYCES (Q40168) Floral homeotic protein AGAMOUS (TAG1) 57 1e-08
AG_BRANA (Q01540) Floral homeotic protein AGAMOUS 57 1e-08
AG_ARATH (P17839) Floral homeotic protein AGAMOUS 57 1e-08
SVP_ARATH (Q9FVC1) SHORT VEGETATIVE PHASE protein 56 1e-08
GLOB_ANTMA (Q03378) Floral homeotic protein GLOBOSA 56 1e-08
AG17_ARATH (Q38840) Agamous-like MADS box protein AGL17 56 1e-08
AG14_ARATH (Q38838) Agamous-like MADS box protein AGL14 56 1e-08
PIST_ARATH (P48007) Floral homeotic protein PISTILLATA (Transcri... 56 2e-08
FLC_ARATH (Q9S7Q7) FLOWERING LOCUS C protein (MADS box protein F... 56 2e-08
AG15_ARATH (Q38847) Agamous-like MADS box protein AGL15 56 2e-08
>SOC1_ARATH (O64645) SUPPRESSOR OF CONSTANS OVEREXPRESSION 1
protein (Agamous-like MADS box protein AGL20)
Length = 214
Score = 66.6 bits (161), Expect = 1e-11
Identities = 32/66 (48%), Positives = 42/66 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N ++ QVTFSK NGL KKA EL LC A ++LI+FSP K++ F N+ IDRYL
Sbjct: 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYL 70
Query: 61 SSTTSK 66
T +
Sbjct: 71 RHTKDR 76
>AGL6_ARATH (P29386) Agamous-like MADS box protein AGL6
Length = 252
Score = 63.2 bits (152), Expect = 1e-10
Identities = 30/59 (50%), Positives = 40/59 (66%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N+ N QVTFSK NGL KKA EL LC A +ALI+FS K++ FG +++ I+RY
Sbjct: 11 IENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERY 69
>AG19_ARATH (O82743) Agamous-like MADS box protein AGL19
Length = 219
Score = 61.6 bits (148), Expect = 4e-10
Identities = 28/59 (47%), Positives = 39/59 (65%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N ++ QVTFSK NGL KKA EL LC A +AL++FSP K++ F ++ I+RY
Sbjct: 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERY 69
>AP3_ARATH (P35632) Floral homeotic protein APETALA3
Length = 232
Score = 60.5 bits (145), Expect = 8e-10
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDT--VIDR 58
+ N++N QVT+SK NGLFKKA EL LC A +++I+FS S K+ + PN T ++D
Sbjct: 11 IENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDL 70
Query: 59 YLSSTTSKQW 68
Y + + W
Sbjct: 71 YQTISDVDVW 80
>AG1Y_ARATH (Q9SZJ6) Agamous-like MADS box protein At4g37940
Length = 228
Score = 59.3 bits (142), Expect = 2e-09
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ + ++ QVTFSK GL KKA EL LC A + LI+FS + K++ F ++ +VIDRY
Sbjct: 11 IDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYN 70
Query: 61 SSTTSKQ 67
S +Q
Sbjct: 71 KSKIEQQ 77
>AG11_ARATH (Q38836) Agamous-like MADS box protein AGL11
Length = 230
Score = 59.3 bits (142), Expect = 2e-09
Identities = 28/59 (47%), Positives = 39/59 (65%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + N+ + I+RY
Sbjct: 11 IENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERY 69
>GLOB_TOBAC (Q03416) Floral homeotic protein GLOBOSA
Length = 209
Score = 58.5 bits (140), Expect = 3e-09
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N SN QVT+SK NG+ KKA E+ LC A +++I+F+ S K+ F ++ ++D+Y
Sbjct: 11 IENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYH 70
Query: 61 SSTTSKQW 68
T + W
Sbjct: 71 KLTGRRLW 78
>AG_PANGI (Q40872) Floral homeotic protein AGAMOUS (GAG2)
Length = 242
Score = 57.8 bits (138), Expect = 5e-09
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + +V I+RY
Sbjct: 27 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYK 86
Query: 61 SSTT 64
+ T
Sbjct: 87 KACT 90
>AG_TOBAC (Q43585) Floral homeotic protein AGAMOUS (NAG1)
Length = 248
Score = 57.4 bits (137), Expect = 7e-09
Identities = 28/59 (47%), Positives = 38/59 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + +V I+RY
Sbjct: 27 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERY 85
>AG_PETHY (Q40885) Floral homeotic protein AGAMOUS (pMADS3)
Length = 242
Score = 57.4 bits (137), Expect = 7e-09
Identities = 28/59 (47%), Positives = 38/59 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + +V I+RY
Sbjct: 27 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERY 85
>AG_LYCES (Q40168) Floral homeotic protein AGAMOUS (TAG1)
Length = 248
Score = 56.6 bits (135), Expect = 1e-08
Identities = 27/59 (45%), Positives = 38/59 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +AL+VFS +++ + + +V I+RY
Sbjct: 27 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERY 85
>AG_BRANA (Q01540) Floral homeotic protein AGAMOUS
Length = 252
Score = 56.6 bits (135), Expect = 1e-08
Identities = 28/59 (47%), Positives = 38/59 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + +V I+RY
Sbjct: 27 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERY 85
>AG_ARATH (P17839) Floral homeotic protein AGAMOUS
Length = 252
Score = 56.6 bits (135), Expect = 1e-08
Identities = 28/59 (47%), Positives = 38/59 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + +V I+RY
Sbjct: 27 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERY 85
>SVP_ARATH (Q9FVC1) SHORT VEGETATIVE PHASE protein
Length = 240
Score = 56.2 bits (134), Expect = 1e-08
Identities = 28/59 (47%), Positives = 39/59 (65%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N + QVTFSK GLFKKA EL LC A +ALI+FS + K+F F ++ V++R+
Sbjct: 11 IDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERH 69
>GLOB_ANTMA (Q03378) Floral homeotic protein GLOBOSA
Length = 215
Score = 56.2 bits (134), Expect = 1e-08
Identities = 27/70 (38%), Positives = 42/70 (59%), Gaps = 2/70 (2%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTV--IDR 58
+ N SN QVT+SK NG+ KKA E+ LC A++++I+F+ S K+ F P+ V +D
Sbjct: 11 IENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDH 70
Query: 59 YLSSTTSKQW 68
Y + + W
Sbjct: 71 YHKLSGKRLW 80
>AG17_ARATH (Q38840) Agamous-like MADS box protein AGL17
Length = 227
Score = 56.2 bits (134), Expect = 1e-08
Identities = 26/67 (38%), Positives = 43/67 (63%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ + ++ QVTFSK GL KKA EL LC A + LI+FS ++K++ F +V + I+R+
Sbjct: 11 IDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFN 70
Query: 61 SSTTSKQ 67
++ +Q
Sbjct: 71 TAKMEEQ 77
>AG14_ARATH (Q38838) Agamous-like MADS box protein AGL14
Length = 221
Score = 56.2 bits (134), Expect = 1e-08
Identities = 28/60 (46%), Positives = 39/60 (64%), Gaps = 1/60 (1%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF-GHPNVDTVIDRY 59
+ N ++ QVTFSK NGL KKA EL LC A +ALI+FSP K++ F ++ ++RY
Sbjct: 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERY 70
>PIST_ARATH (P48007) Floral homeotic protein PISTILLATA
(Transcription factor PI)
Length = 208
Score = 55.8 bits (133), Expect = 2e-08
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVD--TVIDR 58
+ N +N VTFSK NGL KKA E+ LC A +ALI+F+ + K+ + P++D ++D+
Sbjct: 11 IENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQ 70
Query: 59 YLSSTTSKQW 68
Y + K W
Sbjct: 71 YQKLSGKKLW 80
>FLC_ARATH (Q9S7Q7) FLOWERING LOCUS C protein (MADS box protein
FLOWERING LOCUS F)
Length = 196
Score = 55.8 bits (133), Expect = 2e-08
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGH-PNVDTVIDRY 59
+ N+S+ QVTFSK NGL +KA +L LC A +AL+V S S K++SF N+ ++DRY
Sbjct: 11 IENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRY 70
>AG15_ARATH (Q38847) Agamous-like MADS box protein AGL15
Length = 268
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/69 (44%), Positives = 42/69 (59%), Gaps = 3/69 (4%)
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY- 59
+ N ++ QVTFSK +GL KKA EL LC A +A+IVFS S K+F + + + RY
Sbjct: 11 IENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRYG 70
Query: 60 --LSSTTSK 66
SS+ SK
Sbjct: 71 NHQSSSASK 79
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,843,758
Number of Sequences: 164201
Number of extensions: 236474
Number of successful extensions: 568
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 74
length of query: 72
length of database: 59,974,054
effective HSP length: 48
effective length of query: 24
effective length of database: 52,092,406
effective search space: 1250217744
effective search space used: 1250217744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144481.12