BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144406.8 + phase: 0 /pseudo
(106 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NU1M_CITLA (P08834) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 134 5e-32
NU1M_PETHY (Q01300) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 102 2e-22
NU1M_WHEAT (Q01148) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 94 4e-20
NU1M_OENBE (P31839) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 94 4e-20
NU1M_ARATH (P92558) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 94 4e-20
NU1M_CHOCR (P48898) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 83 1e-16
NU1M_MARPO (P26845) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 82 3e-16
NU1M_CYACA (P48899) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 80 9e-16
NU1M_METSE (Q37556) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 70 9e-13
NU1M_TAMTE (O78699) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 68 4e-12
NU1M_DICDI (Q37313) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 68 4e-12
NU1M_SHEEP (O78747) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 67 6e-12
NU1M_ORNAN (Q37717) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 67 6e-12
NU1M_TACAC (O78714) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 67 8e-12
NU1M_SALSA (Q37676) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 67 8e-12
NU1M_RANCA (P16672) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 67 8e-12
NU1M_ONCMY (P48174) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 67 8e-12
NU1M_MANTE (O78702) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 67 8e-12
NU1M_CABUN (O78700) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 67 8e-12
NU1M_BRARE (Q9MIZ0) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 67 8e-12
>NU1M_CITLA (P08834) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 316
Score = 134 bits (336), Expect = 5e-32
Identities = 67/70 (95%), Positives = 67/70 (95%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA DAILNSPLL
Sbjct: 148 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYAWDAILNSPLL 207
Query: 61 AEANVPGSRG 70
AEANVPG G
Sbjct: 208 AEANVPGXPG 217
>NU1M_PETHY (Q01300) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 325
Score = 102 bits (253), Expect = 2e-22
Identities = 49/50 (98%), Positives = 50/50 (100%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYS 221
>NU1M_WHEAT (Q01148) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 325
Score = 94.4 bits (233), Expect = 4e-20
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>NU1M_OENBE (P31839) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 331
Score = 94.4 bits (233), Expect = 4e-20
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 178 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 227
>NU1M_ARATH (P92558) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 325
Score = 94.4 bits (233), Expect = 4e-20
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>NU1M_CHOCR (P48898) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 326
Score = 82.8 bits (203), Expect = 1e-16
Identities = 38/50 (76%), Positives = 44/50 (88%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQ+ IW IPLFP+ +MF+IS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 173 LAQQSIWFVIPLFPIFIMFYISILAETNRAPFDLPEAEAELVAGYNVEYS 222
>NU1M_MARPO (P26845) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 328
Score = 81.6 bits (200), Expect = 3e-16
Identities = 39/50 (78%), Positives = 43/50 (86%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQ +IW PLFPV +MFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 175 LAQTRIWFVFPLFPVFLMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 224
>NU1M_CYACA (P48899) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 344
Score = 80.1 bits (196), Expect = 9e-16
Identities = 37/50 (74%), Positives = 43/50 (86%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQ+ IW PLFP+ +MFFIS LAETNR+PFDLPEAEAE VAGYNVEY+
Sbjct: 190 LAQQNIWYIFPLFPLFLMFFISSLAETNRSPFDLPEAEAELVAGYNVEYS 239
>NU1M_METSE (Q37556) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 334
Score = 70.1 bits (170), Expect = 9e-13
Identities = 33/45 (73%), Positives = 36/45 (79%)
Query: 6 IWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
IW PLFPV +MFF S LAETNRAPFDL E E+E V+GYNVEYA
Sbjct: 188 IWFFFPLFPVAMMFFASALAETNRAPFDLTEGESELVSGYNVEYA 232
>NU1M_TAMTE (O78699) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 318
Score = 67.8 bits (164), Expect = 4e-12
Identities = 31/48 (64%), Positives = 40/48 (82%)
Query: 3 QKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
Q+Q+W IP +P+ +M+FIS LAETNRAPFDL E E+E V+G+NVEYA
Sbjct: 169 QEQMWLIIPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYA 216
>NU1M_DICDI (Q37313) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 317
Score = 67.8 bits (164), Expect = 4e-12
Identities = 31/48 (64%), Positives = 38/48 (78%)
Query: 3 QKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
Q+++W IPL P ++ FIS L ETNR PFDLPEAEAE V+GYNVEY+
Sbjct: 180 QEKVWFIIPLLPGFLLAFISALTETNRPPFDLPEAEAELVSGYNVEYS 227
>NU1M_SHEEP (O78747) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 318
Score = 67.4 bits (163), Expect = 6e-12
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+ Q+Q+W P +P+ +M+FIS LAETNRAPFDL E E+E V+G+NVEYA
Sbjct: 167 ITQEQVWLIFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYA 216
>NU1M_ORNAN (Q37717) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 318
Score = 67.4 bits (163), Expect = 6e-12
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
+ Q+ +W +P +P+++M+FIS LAETNRAPFDL E E+E V+G+NVEYA L
Sbjct: 167 LTQEYMWLIVPTWPLMLMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLA 226
Query: 61 AEANV 65
AN+
Sbjct: 227 EYANI 231
>NU1M_TACAC (O78714) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 318
Score = 67.0 bits (162), Expect = 8e-12
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
+ Q+ +W +P +P+++M+FIS LAETNRAPFDL E E+E V+G+NVEYA L
Sbjct: 167 LTQEFMWLVVPTWPLMLMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLA 226
Query: 61 AEANV 65
AN+
Sbjct: 227 EYANI 231
>NU1M_SALSA (Q37676) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 324
Score = 67.0 bits (162), Expect = 8e-12
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQ+ IW +P +P+ M++IS LAETNRAPFDL E E+E V+G+NVEYA
Sbjct: 173 VAQESIWLLVPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYA 222
>NU1M_RANCA (P16672) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 325
Score = 67.0 bits (162), Expect = 8e-12
Identities = 36/84 (42%), Positives = 51/84 (59%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
++Q+ W +PL+P+ +M+F+S LAETNRAPFDL E E+E V+G+NVEYA L
Sbjct: 171 ISQEFTWFILPLWPMFLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLA 230
Query: 61 AEANVPGSRGLILTETRGACWGTL 84
AN+ L G+C +L
Sbjct: 231 EYANILMMNTLSTIIFLGSCMSSL 254
>NU1M_ONCMY (P48174) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 323
Score = 67.0 bits (162), Expect = 8e-12
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQ+ IW +P +P+ M++IS LAETNRAPFDL E E+E V+G+NVEYA
Sbjct: 172 VAQESIWLLVPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYA 221
>NU1M_MANTE (O78702) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 318
Score = 67.0 bits (162), Expect = 8e-12
Identities = 37/90 (41%), Positives = 52/90 (57%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
+ Q+++W +P +P+ +M+FIS LAETNRAPFDL E E+E V+G+NVEYA L
Sbjct: 167 ITQEKLWLLVPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLA 226
Query: 61 AEANVPGSRGLILTETRGACWGTLHSSFET 90
AN+ L T G + + S T
Sbjct: 227 EYANIIMMNALSTTLFLGGFHNSYNPSLYT 256
>NU1M_CABUN (O78700) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3) (Fragment)
Length = 303
Score = 67.0 bits (162), Expect = 8e-12
Identities = 30/48 (62%), Positives = 39/48 (80%)
Query: 3 QKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
Q+ +W PL+P+ +M+FIS LAETNRAPFDL E E+E V+G+NVEYA
Sbjct: 157 QEHLWLVFPLWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYA 204
>NU1M_BRARE (Q9MIZ0) NADH-ubiquinone oxidoreductase chain 1 (EC
1.6.5.3)
Length = 324
Score = 67.0 bits (162), Expect = 8e-12
Identities = 30/48 (62%), Positives = 39/48 (80%)
Query: 3 QKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
Q+ W +PL+P+ +M+FIS LAETNRAPFDL E E+E V+G+NVEYA
Sbjct: 175 QEDTWLLLPLWPLAIMWFISTLAETNRAPFDLTEGESELVSGFNVEYA 222
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,009,526
Number of Sequences: 164201
Number of extensions: 413912
Number of successful extensions: 981
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 172
length of query: 106
length of database: 59,974,054
effective HSP length: 82
effective length of query: 24
effective length of database: 46,509,572
effective search space: 1116229728
effective search space used: 1116229728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144406.8