BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144404.22 + phase: 0
(471 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MYSN_DROME (Q99323) Myosin heavy chain, non-muscle (Zipper prote... 39 0.022
TRHY_HUMAN (Q07283) Trichohyalin 38 0.064
MYHB_MOUSE (O08638) Myosin heavy chain, smooth muscle isoform (S... 36 0.19
SOJO_XENLA (Q9PW73) Cytoskeletal protein Sojo (p170) 35 0.32
TEGU_HHV7J (P52362) Large tegument protein 35 0.42
TRT_DROME (P19351) Troponin T, skeletal muscle (Upheld protein) ... 35 0.54
MYHB_HUMAN (P35749) Myosin heavy chain, smooth muscle isoform (S... 35 0.54
E15R_MOUSE (Q60902) Epidermal growth factor receptor substrate 1... 34 0.71
MYSP_BOOMI (Q86RN8) Paramyosin 34 0.93
MYHB_RABIT (P35748) Myosin heavy chain, smooth muscle isoform (S... 33 1.2
DYNA_HUMAN (Q14203) Dynactin 1 (150 kDa dynein-associated polype... 33 1.2
RA50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase 33 2.1
PUMA_PARUN (O61308) 227 kDa spindle- and centromere-associated p... 32 2.7
MYHB_CHICK (P10587) Myosin heavy chain, gizzard smooth muscle 32 2.7
E15R_HUMAN (Q9UBC2) Epidermal growth factor receptor substrate 1... 32 2.7
TRI_CHLNI (Q7M3Y3) Troponin I (TnI) 32 3.5
PLE1_HUMAN (Q15149) Plectin 1 (PLTN) (PCN) (Hemidesmosomal prote... 32 3.5
SYA_BOMMO (P21894) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 32 4.6
MYSC_CAEEL (P12845) Myosin heavy chain C (MHC C) 32 4.6
DYNA_RAT (P28023) Dynactin 1 (150 kDa dynein-associated polypept... 32 4.6
>MYSN_DROME (Q99323) Myosin heavy chain, non-muscle (Zipper protein)
(Myosin II) (Non-muscle MHC)
Length = 2057
Score = 39.3 bits (90), Expect = 0.022
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 359 RMPYKISRFVSAITPAPPLPMTFDTEKECQEKIAELTRESYMWERKYRKKEQEYDTLKNL 418
R+ K+ + L D K+ +EK+ L + + +ERKY++ E TL
Sbjct: 920 RLYTKVKPLLEVTKQEEKLVQKEDELKQVREKLDTLAKNTQEYERKYQQALVEKTTLAEQ 979
Query: 419 LDQQIQANRQEKEENIRLRAALQKKEDFLDKV 450
L +I+ + +E RL A Q+ ED + ++
Sbjct: 980 LQAEIELCAEAEESRSRLMARKQELEDMMQEL 1011
>TRHY_HUMAN (Q07283) Trichohyalin
Length = 1898
Score = 37.7 bits (86), Expect = 0.064
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 384 EKECQEKIAELTRES------YMWERKYRKKEQEYDTLKNLLDQQIQANR-QEKEENIRL 436
E+E Q++ +L RE WER+YRKK++ + LL ++ + R QE+E R
Sbjct: 1010 EEELQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERERQYRE 1069
Query: 437 RAALQKKEDFL 447
LQ++E+ L
Sbjct: 1070 EEELQQEEEQL 1080
Score = 35.4 bits (80), Expect = 0.32
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 382 DTEKECQEKIAELTRESYMWERKYRKKEQEYDTLKNLL-DQQIQANRQEKEENIRLRAAL 440
+ E+E Q + E R ER+YR++EQ + LL +++ + RQE+E R L
Sbjct: 925 EEEEELQREEREKRRRQEQ-ERQYREEEQLQQEEEQLLREEREKRRRQERERQYRKDKKL 983
Query: 441 QKKEDFLDKVCPGRKKRR 458
Q+KE+ L P +++R+
Sbjct: 984 QQKEEQLLGEEPEKRRRQ 1001
Score = 34.3 bits (77), Expect = 0.71
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 384 EKECQEKIAEL------TRESYMWERKYRKKEQEYDTLKNLL-DQQIQANRQEKEENIRL 436
E+E Q++ +L TR ER+YRK+E+ + LL ++ + RQE+E R
Sbjct: 1070 EEELQQEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQERERQCRE 1129
Query: 437 RAALQKKEDFLDKVCPGRKKRRMDLFDGPHSDFED 471
LQ++E+ L + R+KRR + + + E+
Sbjct: 1130 EEELQQEEEQL--LREEREKRRRQELERQYREEEE 1162
Score = 31.2 bits (69), Expect = 6.0
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 402 ERKYRKKEQEYDTLKNLLDQQIQA-NRQEKEENIRLRAALQKKEDFLDKVCPGRKKRR 458
ER+YR++E+ + LL ++ + RQE E R LQ++E+ L + P +++R+
Sbjct: 1064 ERQYREEEELQQEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQ 1121
>MYHB_MOUSE (O08638) Myosin heavy chain, smooth muscle isoform (SMMHC)
Length = 1972
Score = 36.2 bits (82), Expect = 0.19
Identities = 26/93 (27%), Positives = 47/93 (49%), Gaps = 6/93 (6%)
Query: 385 KECQEKIAELTRESYMWERKYRKKEQEYDTLKNLLDQQIQA----NRQEKEENIRLRAAL 440
++ QE + E TR+ K R+ E E ++L++ LD++++A R NI+L +
Sbjct: 1318 QDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAKQNLERHVSTLNIQLSDSK 1377
Query: 441 QKKEDFLD--KVCPGRKKRRMDLFDGPHSDFED 471
+K +DF +V KKR +G +E+
Sbjct: 1378 KKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEE 1410
Score = 32.3 bits (72), Expect = 2.7
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 372 TPAPPLPMTFDTEKECQ---EKIAELTRESYMWERKYRKKEQEYDTL---KNLLDQQIQA 425
T PL E+E Q E++ ++T E + ++ EQ++ L K LL +Q+QA
Sbjct: 839 TKVKPLLQVTRQEEEMQAKEEEMQKITERQQKAETELKELEQKHTQLAEEKTLLQEQLQA 898
Query: 426 NRQ--EKEENIRLRAALQKKE 444
+ + E +R+R A +K+E
Sbjct: 899 ETELYAESEEMRVRLAAKKQE 919
>SOJO_XENLA (Q9PW73) Cytoskeletal protein Sojo (p170)
Length = 1335
Score = 35.4 bits (80), Expect = 0.32
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 387 CQEKIA----ELTRESYMWERKYRKKEQEYDTLKNLLDQQIQANRQEKEENIRLRAALQK 442
C+E++A EL +E + + K +E L+N + + Q+ ++ EEN+RL+ LQ+
Sbjct: 684 CKEELALYLHELEDNREQFENQIKTKSEELWCLQNEIKLRTQSLQETSEENVRLQQTLQQ 743
Query: 443 KEDFLDK 449
++ L +
Sbjct: 744 QQHMLQQ 750
>TEGU_HHV7J (P52362) Large tegument protein
Length = 2059
Score = 35.0 bits (79), Expect = 0.42
Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 15/64 (23%)
Query: 82 INLPVLDKVPFSGLEETPKHSTIAA-----TLHLETDEVKTHLI--------TRGKFLGF 128
++ P + ++P GL PK + I T H ++ E KTHLI T+G+ F
Sbjct: 1986 LSSPTIQRIPIKGL--VPKENEIVFLPEKNTAHTDSKETKTHLIDTFNILSQTKGEIKTF 2043
Query: 129 STDF 132
STDF
Sbjct: 2044 STDF 2047
>TRT_DROME (P19351) Troponin T, skeletal muscle (Upheld protein)
(Intended thorax protein)
Length = 396
Score = 34.7 bits (78), Expect = 0.54
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 20/110 (18%)
Query: 327 TIRRRDKGQLGKKTGAVHESYTQWVIDRAVQIRMPYKISRFVSAITPAPPLPMTFDTEKE 386
TI ++D G LG + A+ + T+ ++ +I + ++I PL + E +
Sbjct: 146 TIAKKDAGVLGLSSAAMERNKTKEQLEEEKKISLSFRIK----------PLAIEGFAEAK 195
Query: 387 CQEK-------IAELTRESYMWERKYRKKEQEYDTLKNLLDQQIQANRQE 429
+EK I +L E Y E R+K Q+YD LK L ++Q Q R +
Sbjct: 196 LREKAQELWELIVKLETEKYDLEE--RQKRQDYD-LKELKERQKQQLRHK 242
>MYHB_HUMAN (P35749) Myosin heavy chain, smooth muscle isoform (SMMHC)
Length = 1972
Score = 34.7 bits (78), Expect = 0.54
Identities = 20/70 (28%), Positives = 40/70 (56%), Gaps = 4/70 (5%)
Query: 385 KECQEKIAELTRESYMWERKYRKKEQEYDTLKNLLDQQIQANRQEKEE----NIRLRAAL 440
++ QE + E TR+ K R+ E+E ++L++ LD++++A + + NI+L +
Sbjct: 1318 QDTQELLQEETRQKLNVSTKLRQLEEERNSLQDQLDEEMEAKQNLERHISTLNIQLSDSK 1377
Query: 441 QKKEDFLDKV 450
+K +DF V
Sbjct: 1378 KKLQDFASTV 1387
Score = 33.1 bits (74), Expect = 1.6
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 333 KGQLGKKTGAVHESY--TQWVIDRAVQIRMPYKISRFVSAITPAPPLPMTFDTEKECQEK 390
+G L +K A + VI R + + ++ T PL E+E Q K
Sbjct: 798 RGYLARKAFAKRQQQLTAMKVIQRNCAAYLKLRNWQWWRLFTKVKPLLQVTRQEEEMQAK 857
Query: 391 IAELTR---ESYMWERKYRKKEQEYDTL---KNLLDQQIQANRQ----EKEENIRLRAAL 440
EL + E + ++ EQ++ L KNLL +Q+QA + +E +RL A
Sbjct: 858 EDELQKTKERQQKAENELKELEQKHSQLTEEKNLLQEQLQAETELYAEAEEMRVRLAAKK 917
Query: 441 QKKEDFLDKV 450
Q+ E+ L ++
Sbjct: 918 QELEEILHEM 927
Score = 30.8 bits (68), Expect = 7.9
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 385 KECQEKIAELTRESYMWERKYRKKEQEYDTLKNLLDQQIQANRQEKEENI-RLRAALQKK 443
KE ++K ++LT E + + + + + + Y + + ++ A +QE EE + + A L+++
Sbjct: 876 KELEQKHSQLTEEKNLLQEQLQAETELYAEAEE-MRVRLAAKKQELEEILHEMEARLEEE 934
Query: 444 EDFLDKVCPGRKKRRMDLFD 463
ED ++ RKK + D
Sbjct: 935 EDRGQQLQAERKKMAQQMLD 954
>E15R_MOUSE (Q60902) Epidermal growth factor receptor substrate
15-like 1 (Eps15-related protein) (Eps15R) (Epidermal
growth factor receptor pathway substrate 15 related
sequence) (Eps15-rs)
Length = 907
Score = 34.3 bits (77), Expect = 0.71
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 27/156 (17%)
Query: 325 WHTIRRRDKGQLGKKTGAVHESYTQWVIDRAV---QIRMPYKISRFVSAITPAPPLPMTF 381
W R G+L K+ A+ + Q + + + Q+ P + TP P T
Sbjct: 315 WALADTRQTGKLSKEQFALAMYFIQQKVSKGIDPPQVLSPDMVPPSERG-TPIPDSSSTL 373
Query: 382 DTEK--------ECQEKIAELTRESYMWERKYRKKEQ-------EYDTLKNLLD------ 420
+ + + ++IA+L RE Y E+ R+KE+ E L+N LD
Sbjct: 374 ASGEFTGVKELDDISQEIAQLQREKYSLEQDIREKEEAIKQKTSEVQELQNDLDRETSSL 433
Query: 421 QQIQANRQEKEENIRLRAALQKKEDFLDKVCPGRKK 456
Q+++A +Q+ ++ RL Q+K D + R+K
Sbjct: 434 QELEAQKQDAQD--RLDEMDQQKAKLRDMLSDVRQK 467
>MYSP_BOOMI (Q86RN8) Paramyosin
Length = 873
Score = 33.9 bits (76), Expect = 0.93
Identities = 22/86 (25%), Positives = 40/86 (45%), Gaps = 8/86 (9%)
Query: 384 EKECQEKIAELTRESYMWERKYRKKEQEYDTLKNLLDQQI--------QANRQEKEENIR 435
E +CQ AEL + + +ER+ + KE+E + L+ ++ +A + K E R
Sbjct: 477 EAKCQRLTAELAQVRHEYERRLQIKEEEIEALRKQYQLEVEQLNMRLAEAEAKLKTEIAR 536
Query: 436 LRAALQKKEDFLDKVCPGRKKRRMDL 461
++ Q + L+ K+ MDL
Sbjct: 537 IKKKYQAQITELEMSLDAANKQNMDL 562
>MYHB_RABIT (P35748) Myosin heavy chain, smooth muscle isoform (SMMHC)
Length = 1972
Score = 33.5 bits (75), Expect = 1.2
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 4/70 (5%)
Query: 385 KECQEKIAELTRESYMWERKYRKKEQEYDTLKNLLDQQIQANRQEKEE----NIRLRAAL 440
++ QE + E TR+ K R+ E E ++L+ LD++++A + + NI+L +
Sbjct: 1318 QDTQELLQEETRQKLNVSTKLRQLEDERNSLQEQLDEEMEAKQNLERHISTLNIQLSDSK 1377
Query: 441 QKKEDFLDKV 450
+K +DF V
Sbjct: 1378 KKLQDFASTV 1387
Score = 31.6 bits (70), Expect = 4.6
Identities = 30/122 (24%), Positives = 55/122 (44%), Gaps = 10/122 (8%)
Query: 333 KGQLGKKTGAVHESY--TQWVIDRAVQIRMPYKISRFVSAITPAPPLPMTFDTEKECQ-- 388
+G L +K A + VI R + + ++ T PL E+E Q
Sbjct: 798 RGYLARKAFAKRQQQLTAMKVIQRNCAAYLKLRNWQWWRLFTKVKPLLQVTRQEEEMQAK 857
Query: 389 ----EKIAELTRESYMWERKYRKKEQEYDTLKNLLDQQIQANRQ--EKEENIRLRAALQK 442
+KI E +++ ++ ++K + KNLL +Q+QA + + E +R+R A +K
Sbjct: 858 EDELQKIKERQQKAESELQELQQKHTQLSEEKNLLQEQLQAETELYAEAEEMRVRLAAKK 917
Query: 443 KE 444
+E
Sbjct: 918 QE 919
>DYNA_HUMAN (Q14203) Dynactin 1 (150 kDa dynein-associated
polypeptide) (DP-150) (DAP-150) (p150-glued) (p135)
Length = 1278
Score = 33.5 bits (75), Expect = 1.2
Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 37/223 (16%)
Query: 271 PLLGMEGGISYNPTLARRQFGYPMEKKPLSIYLENVYYFNTEDSTGMRE--------QVV 322
P+L G + P+ ++ + G + + L LE + ED ++E + V
Sbjct: 199 PVLTSPGAVPPLPSPSKEEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQV 258
Query: 323 RAWHTIRRRDKGQL----------GKKTGAVHESYTQWVIDRAVQIRMPY---------- 362
+ W + + + L K+ E Y + + D A I M
Sbjct: 259 QEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERA 318
Query: 363 -KISRFVSAITPAPPLPMTFDTE---KECQEKIAELTRESYMWERKYRKKEQEYDTLKNL 418
+ + V A+ +T D E E +EK ++ SY + ++ E++ LK+
Sbjct: 319 ESLQQEVEALKERVD-ELTTDLEILKAEIEEKGSDGAASSY----QLKQLEEQNARLKDA 373
Query: 419 LDQQIQANRQEKEENIRLRAALQKKEDFLDKVCPGRKKRRMDL 461
L + + EK+E+++L+ ++KK L+ V R++ + +L
Sbjct: 374 LVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEEL 416
>RA50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase
Length = 880
Score = 32.7 bits (73), Expect = 2.1
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 379 MTFDTEKECQEKIAELTR-ESYMWERKYRKK-------EQEYDTLKNLLDQ------QIQ 424
M D E E +EK A+L ES E +Y +K E+E +L L++ QI+
Sbjct: 635 MLADVENEIEEKEAKLKDLESKFNEEEYEEKRERLVKLEREVSSLTARLEELKKSVEQIK 694
Query: 425 AN----RQEKEENIRLRAALQKKEDFLDKVCPGRKK 456
A ++EKEE + + ++K E L KV RKK
Sbjct: 695 ATLRKLKEEKEEREKAKLEIKKLEKALSKVEDLRKK 730
>PUMA_PARUN (O61308) 227 kDa spindle- and centromere-associated
protein (PUMA1)
Length = 1955
Score = 32.3 bits (72), Expect = 2.7
Identities = 22/66 (33%), Positives = 33/66 (49%), Gaps = 10/66 (15%)
Query: 385 KECQEKIAELTRESYMWERKYRKKEQEYDTLKNLLDQQIQANRQEKEENIRLRAALQKKE 444
KE EKI +L E ER YR+K +E D LK + EK +++ A Q+ +
Sbjct: 1135 KEQNEKIEKLRIEHDHLERDYREKTKEVDRLKEV----------EKTFELKVNRARQELD 1184
Query: 445 DFLDKV 450
+F K+
Sbjct: 1185 EFSKKL 1190
>MYHB_CHICK (P10587) Myosin heavy chain, gizzard smooth muscle
Length = 1978
Score = 32.3 bits (72), Expect = 2.7
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 333 KGQLGKKTGAVHESY--TQWVIDRAVQIRMPYKISRFVSAITPAPPLPMTFDTEKECQEK 390
+G L +K A + VI R + + ++ T PL E+E Q K
Sbjct: 803 RGYLARKAFAKRQQQLTAMKVIQRNCAAYLKLRNWQWWRLFTKVKPLLQVTRQEEEMQAK 862
Query: 391 IAELTR---ESYMWERKYRKKEQEYDTL---KNLLDQQIQANRQ----EKEENIRLRAAL 440
EL R E + ++ EQ++ L KNLL +++QA + +E +RL A
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 441 QKKEDFLDKV 450
Q+ E+ L ++
Sbjct: 923 QELEEILHEM 932
>E15R_HUMAN (Q9UBC2) Epidermal growth factor receptor substrate
15-like 1 (Eps15-related protein) (Eps15R)
Length = 864
Score = 32.3 bits (72), Expect = 2.7
Identities = 25/84 (29%), Positives = 43/84 (50%), Gaps = 15/84 (17%)
Query: 386 ECQEKIAELTRESYMWERKYRKKEQ-------EYDTLKNLLD------QQIQANRQEKEE 432
+ ++IA+L RE Y E+ R+KE+ E L+N LD Q+++A +Q+ ++
Sbjct: 388 DISQEIAQLQREKYSLEQDIREKEEAIRQKTSEVQELQNDLDRETSSLQELEAQKQDAQD 447
Query: 433 NIRLRAALQKKEDFLDKVCPGRKK 456
RL Q+K D + R+K
Sbjct: 448 --RLDEMDQQKAKLRDMLSDVRQK 469
>TRI_CHLNI (Q7M3Y3) Troponin I (TnI)
Length = 292
Score = 32.0 bits (71), Expect = 3.5
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 384 EKECQEKIAELTRESY-MWERKYRKKEQEYDTLKNLLDQQIQANRQEKEENIRLRAALQK 442
++E +E A E Y + + R++ QE + + ++ Q +QE+EE +RL Q+
Sbjct: 65 QQEEEEAAARAAEEEYNRQQEELRRQRQEEERQRR---EEEQRRQQEEEERLRLEREEQE 121
Query: 443 KEDFLDKVCPGRKKRR 458
+E+ ++ +KK++
Sbjct: 122 REEEARRMAEEQKKKK 137
>PLE1_HUMAN (Q15149) Plectin 1 (PLTN) (PCN) (Hemidesmosomal protein 1)
(HD1)
Length = 4684
Score = 32.0 bits (71), Expect = 3.5
Identities = 22/66 (33%), Positives = 37/66 (55%), Gaps = 4/66 (6%)
Query: 382 DTEKECQEKIAELT-RESYMWERKY---RKKEQEYDTLKNLLDQQIQANRQEKEENIRLR 437
D E E +K AE T R+ E++ R + +E D KNLLD+++Q + E E R R
Sbjct: 2301 DAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEETDHQKNLLDEELQRLKAEATEAARQR 2360
Query: 438 AALQKK 443
+ ++++
Sbjct: 2361 SQVEEE 2366
>SYA_BOMMO (P21894) Alanyl-tRNA synthetase (EC 6.1.1.7)
(Alanine--tRNA ligase) (AlaRS)
Length = 967
Score = 31.6 bits (70), Expect = 4.6
Identities = 18/48 (37%), Positives = 25/48 (51%)
Query: 383 TEKECQEKIAELTRESYMWERKYRKKEQEYDTLKNLLDQQIQANRQEK 430
+ KE +KI +LT E + Y KK++ + LKNL Q R EK
Sbjct: 790 SHKEVSKKIVDLTNEISQAQISYWKKDELRNMLKNLKKQLDDKERAEK 837
>MYSC_CAEEL (P12845) Myosin heavy chain C (MHC C)
Length = 1947
Score = 31.6 bits (70), Expect = 4.6
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 413 DTLKNLLDQQIQANRQEKEENIRLRAALQKKEDFLDKVCPGRKKRRMDLF---DGPHSD 468
+ ++ L + ANR E E + + ++L+KK+ DKV KK+ DL+ DG D
Sbjct: 1431 ENARSRLTAEADANRLEAEHHAQAVSSLEKKQKAFDKVIDEWKKKVDDLYLELDGAQRD 1489
>DYNA_RAT (P28023) Dynactin 1 (150 kDa dynein-associated
polypeptide) (DP-150) (DAP-150) (p150-glued)
Length = 1280
Score = 31.6 bits (70), Expect = 4.6
Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 36/222 (16%)
Query: 271 PLLGMEGGISYNPTLARRQFGYPMEKKPLSIYLENVYYFNTEDSTGMRE--------QVV 322
P L G P+ ++ + G + + L LE + +ED ++E + V
Sbjct: 199 PALTSPGAAPPLPSPSKEEEGLRDQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQV 258
Query: 323 RAWHTI---------RRRDKGQLGKKTGAVHESYTQWVIDRAVQIRMPY----------- 362
+ W + RR + + K+ E Y + + D A I M
Sbjct: 259 QEWKSKMQEQQADLQRRLKEAKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAE 318
Query: 363 KISRFVSAITPAPPLPMTFDTE---KECQEKIAELTRESYMWERKYRKKEQEYDTLKNLL 419
+ + V A+ +T D E E +EK ++ SY + ++ E++ LK+ L
Sbjct: 319 SLQQEVEALKERVD-ELTTDLEILKAEIEEKGSDGAASSY----QLKQLEEQNARLKDAL 373
Query: 420 DQQIQANRQEKEENIRLRAALQKKEDFLDKVCPGRKKRRMDL 461
+ + EK+E+++L+ ++KK L+ V R++ + +L
Sbjct: 374 VRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEEL 415
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,141,055
Number of Sequences: 164201
Number of extensions: 2655402
Number of successful extensions: 7333
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 7220
Number of HSP's gapped (non-prelim): 163
length of query: 471
length of database: 59,974,054
effective HSP length: 114
effective length of query: 357
effective length of database: 41,255,140
effective search space: 14728084980
effective search space used: 14728084980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144404.22