BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144389.3 - phase: 0
(488 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMA4_MOUSE (O35343) Importin alpha-4 subunit (Karyopherin alpha-... 39 0.040
IMA4_HUMAN (O00629) Importin alpha-4 subunit (Karyopherin alpha-... 39 0.040
VAC8_YEAST (P39968) Vacuolar protein 8 37 0.088
IMA_LYCES (O22478) Importin alpha subunit (Karyopherin alpha sub... 36 0.20
YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ... 35 0.33
IMA3_MOUSE (O35344) Importin alpha-3 subunit (Karyopherin alpha-... 35 0.33
IMA3_HUMAN (O00505) Importin alpha-3 subunit (Karyopherin alpha-... 35 0.33
ARM_DROME (P18824) Armadillo segment polarity protein 33 1.3
IMA2_XENLA (P52171) Importin alpha-2 subunit (Karyopherin alpha-... 32 2.8
YL86_YEAST (Q06708) Hypothetical 99.8 kDa protein in IKI3-RPS29A... 32 3.7
STD2_MOUSE (Q9JJG5) SERTA domain-containing protein 2 (Transcrip... 32 3.7
IMA1_YEAST (Q02821) Importin alpha subunit (Karyopherin alpha su... 32 3.7
AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 32 3.7
IMA1_ARATH (Q96321) Importin alpha-1 subunit (Karyopherin alpha-... 32 4.8
YMYD_CAEEL (Q9BIB4) Transcription initiation factor IIA small ch... 31 6.3
STD2_HUMAN (Q14140) SERTA domain-containing protein 2 (Transcrip... 31 6.3
IMA2_MOUSE (P52293) Importin alpha-2 subunit (Karyopherin alpha-... 31 8.2
HIS2_BACAN (P60534) Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1... 31 8.2
>IMA4_MOUSE (O35343) Importin alpha-4 subunit (Karyopherin alpha-4
subunit) (Importin alpha Q1)
Length = 521
Score = 38.5 bits (88), Expect = 0.040
Identities = 22/85 (25%), Positives = 43/85 (49%), Gaps = 2/85 (2%)
Query: 18 EILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGILFQH 77
+++ DSGI+P L+ L+SH +V+++ AL+A+ N+ T +++ A F L H
Sbjct: 278 QMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTH 337
Query: 78 SLPSSSLSEHVAPIIMQLAASTISQ 102
P +++ + + A Q
Sbjct: 338 --PKEKINKEAVWFLSNITAGNQQQ 360
>IMA4_HUMAN (O00629) Importin alpha-4 subunit (Karyopherin alpha-4
subunit) (Qip1 protein)
Length = 521
Score = 38.5 bits (88), Expect = 0.040
Identities = 22/85 (25%), Positives = 43/85 (49%), Gaps = 2/85 (2%)
Query: 18 EILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGILFQH 77
+++ DSGI+P L+ L+SH +V+++ AL+A+ N+ T +++ A F L H
Sbjct: 278 QMVIDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTH 337
Query: 78 SLPSSSLSEHVAPIIMQLAASTISQ 102
P +++ + + A Q
Sbjct: 338 --PKEKINKEAVWFLSNITAGNQQQ 360
>VAC8_YEAST (P39968) Vacuolar protein 8
Length = 578
Score = 37.4 bits (85), Expect = 0.088
Identities = 43/206 (20%), Positives = 94/206 (44%), Gaps = 32/206 (15%)
Query: 16 NKEILFDSGILPPLLRLVSHNDVE-MKLVALKALQNLS-TLKKNGLEMIQQGAARKLFGI 73
N+ ++ D+G L PL+RL+ + D E ++ A+ L+NL+ + +KN E + GA K +
Sbjct: 325 NEGLIVDAGFLKPLVRLLDYKDSEEIQCHAVSTLRNLAASSEKNRKEFFESGAVEKCKEL 384
Query: 74 LFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQ 133
+ S+ ++ LA + +S+ + LLE++ L +L+ T ++
Sbjct: 385 ALDSPV---SVQSEISACFAILALADVSK-----LDLLEANI----LDALIPMTFSQNQE 432
Query: 134 YIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAVKLFSCLVESCDED 193
+A+ + N + +++ ++ + +R ++ +
Sbjct: 433 V---------SGNAAAALANLCSRVNNYTKIIEAWDRPNEGIRGFLIRFLK------SDY 477
Query: 194 AILKHVNQKCIETLLQMLKSSSDKEE 219
A +H+ + T+LQ+L+S +DK E
Sbjct: 478 ATFEHI---ALWTILQLLESHNDKVE 500
Score = 36.6 bits (83), Expect = 0.15
Identities = 69/329 (20%), Positives = 142/329 (42%), Gaps = 40/329 (12%)
Query: 7 LAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGA 66
L + + NK ++ + G L PL+ + ++VE++ A+ + NL+T N ++ GA
Sbjct: 109 LGNLAVNNENKLLIVEMGGLEPLINQMMGDNVEVQCNAVGCITNLATRDDNKHKIATSGA 168
Query: 67 ARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFN------L 120
+P + L++ + + A + T + E+ +++ N L
Sbjct: 169 L-----------IPLTKLAKSKHIRVQRNATGALLNMTHSE----ENRKELVNAGAVPVL 213
Query: 121 FSLVSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRECPSVLV--LVKLFENESLSLRAS 178
SL+S T PDV+ Y ++ + R KL + LV LV L ++ S ++
Sbjct: 214 VSLLSSTDPDVQYYCTTALSNIAVDEAN---RKKLAQTEPRLVSKLVSLMDSPSSRVKCQ 270
Query: 179 AVKLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQ 238
A L + D L+ V + L+++++S S +++++ IR +
Sbjct: 271 ATLALRNL--ASDTSYQLEIVRAGGLPHLVKLIQSDS-IPLVLASVACIRNISIHPLNEG 327
Query: 239 WLYDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVL 298
+ DAG L + + + D + S+ ++ A + R ++ + +K E G +
Sbjct: 328 LIVDAGFLKPLVRLL------DYKDSEEIQCHAVSTLRNLAASSEKNRKEFFESGAVEKC 381
Query: 299 VQL-LESGTAQTKQLAA----LSLTQFSK 322
+L L+S + +++A L+L SK
Sbjct: 382 KELALDSPVSVQSEISACFAILALADVSK 410
>IMA_LYCES (O22478) Importin alpha subunit (Karyopherin alpha
subunit) (KAP alpha)
Length = 527
Score = 36.2 bits (82), Expect = 0.20
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 18/191 (9%)
Query: 26 LPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLE-MIQQGAARKLFGILFQHSLPSSSL 84
LP L RL+ ND E+ A AL LS + ++ +I+ G +L +L HS PS
Sbjct: 245 LPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLL-HSSPSV-- 301
Query: 85 SEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYI-IQTFYSLC 143
+ P + + D QT V + D L LV+ + ++ I + +++
Sbjct: 302 ---LIPALRTVGNIVTGDDIQTQVMI-----DHHALPCLVNLLTQNYKKSIKKEACWTIS 353
Query: 144 HSPSASYIRNKLR---ECPSVLVLVKLFENESLSLRASAVKLFSCLVESCDEDAILKHVN 200
+ + + RN+++ E + LV L +N ++ A S + D I V+
Sbjct: 354 NITAGN--RNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVS 411
Query: 201 QKCIETLLQML 211
Q CI+ L +L
Sbjct: 412 QGCIKPLCDLL 422
>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4
intergenic region
Length = 1140
Score = 35.4 bits (80), Expect = 0.33
Identities = 55/256 (21%), Positives = 103/256 (39%), Gaps = 24/256 (9%)
Query: 82 SSLSEHVAPIIMQL-AASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYIIQTFY 140
SS S V+ ++ + ++S++S DT ++ + S E + ++FS +SYT D+ +
Sbjct: 53 SSSSTLVSSVVPEFTSSSSLSSDT---IASILSSESLVSIFSSLSYTSSDISSTSVNDVE 109
Query: 141 SLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAVKLFSCLVESCDEDAILKHVN 200
S PS SY S + E+ S+ +SA++ S S +
Sbjct: 110 SSTSGPSNSY-----SALSSTNAQLSSSTTETDSISSSAIQTSSPQTSSSNGGGSSSEPL 164
Query: 201 QKCIETLLQMLKSSSDKEEIVSA----MGIIRYLPKVQQITQWLYDAGALSIICKYVQDG 256
K ++L+ SSSD + S+ + + PK+ + G S K V
Sbjct: 165 GK--SSVLETTASSSDTTAVTSSTFTTLTDVSSSPKISSSGSAVTSVGTTSDASKEVFSS 222
Query: 257 TDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALS 316
+ D+ + +S + T+ L + + I V S A + +++S
Sbjct: 223 STSDVSS---LLSSTSSPASSTISETLPFSSTILSITSSPV------SSEAPSATSSSVS 273
Query: 317 LTQFSKSSNELSSPMP 332
S +S+ +SS P
Sbjct: 274 SEASSSTSSSVSSEAP 289
>IMA3_MOUSE (O35344) Importin alpha-3 subunit (Karyopherin alpha-3
subunit) (Importin alpha Q2)
Length = 521
Score = 35.4 bits (80), Expect = 0.33
Identities = 20/85 (23%), Positives = 42/85 (48%), Gaps = 2/85 (2%)
Query: 18 EILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGILFQH 77
+++ DSG++P L+ L+SH +V+++ AL+A+ N+ T +++ F L H
Sbjct: 278 QMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSH 337
Query: 78 SLPSSSLSEHVAPIIMQLAASTISQ 102
P +++ + + A Q
Sbjct: 338 --PKEKINKEAVWFLSNITAGNQQQ 360
>IMA3_HUMAN (O00505) Importin alpha-3 subunit (Karyopherin alpha-3
subunit) (SRP1-gamma)
Length = 521
Score = 35.4 bits (80), Expect = 0.33
Identities = 20/85 (23%), Positives = 42/85 (48%), Gaps = 2/85 (2%)
Query: 18 EILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGILFQH 77
+++ DSG++P L+ L+SH +V+++ AL+A+ N+ T +++ F L H
Sbjct: 278 QMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSH 337
Query: 78 SLPSSSLSEHVAPIIMQLAASTISQ 102
P +++ + + A Q
Sbjct: 338 --PKEKINKEAVWFLSNITAGNQQQ 360
>ARM_DROME (P18824) Armadillo segment polarity protein
Length = 843
Score = 33.5 bits (75), Expect = 1.3
Identities = 58/277 (20%), Positives = 113/277 (39%), Gaps = 39/277 (14%)
Query: 164 LVKLFENES-LSLRASAVKLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVS 222
L+KL +E + + +A+ + + AI+ + + + L++ + +S+D E +
Sbjct: 164 LIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMN--SPQMVAALVRAISNSNDLESTKA 221
Query: 223 AMGIIRYLPKVQQITQWLYDAGALSIICKYVQDGTDKDL--------------QKSKLVE 268
A+G + L +Q ++ +G + + K + + L SK+
Sbjct: 222 AVGTLHNLSHHRQGLLAIFKSGGIPALVKLLSSPVESVLFYAITTLHNLLLHQDGSKMAV 281
Query: 269 NSAGALCRFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSSNELS 328
AG L + L + + + I+T +Q+L G ++K + S NEL
Sbjct: 282 RLAGGLQKM---VTLLQRNNVKFLAIVTDCLQILAYGNQESKLIILA-----SGGPNELV 333
Query: 329 SPMPK---RKGFWCFSAQTEAGCLVHGGVCIVESSFCLLEADAVGALAKTLGDSDLGVCE 385
M K W T + L VC + +++A + ALA LG+ + +
Sbjct: 334 RIMRSYDYEKLLW-----TTSRVLKVLSVC-SSNKPAIVDAGGMQALAMHLGNMSPRLVQ 387
Query: 386 NSLDALLTLIDGEKLQSGSKVLADENVIPLIIRFLGS 422
N L L L D + +KV E ++ +++ LGS
Sbjct: 388 NCLWTLRNLSD-----AATKVEGLEALLQSLVQVLGS 419
>IMA2_XENLA (P52171) Importin alpha-2 subunit (Karyopherin alpha-2
subunit)
Length = 522
Score = 32.3 bits (72), Expect = 2.8
Identities = 74/333 (22%), Positives = 127/333 (37%), Gaps = 77/333 (23%)
Query: 9 EMESTDRNKEI--LFDSGILPPLLRLVS-HNDVEMKLVALKALQNLSTLKKNGLEMIQQG 65
+M S +RN + + ++G++P L+ +S HN+ ++ A AL N+++ + + + G
Sbjct: 98 KMLSKERNPPLNDIIEAGLIPKLVEFLSYHNNSTLQFEAAWALTNIASGTSDQTKSVVDG 157
Query: 66 AARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVS 125
A F L S P +SE A I+ D L S + L +LV+
Sbjct: 158 GAIPAFISLI--SSPHLHISEQAV-----WALGNIAGDGPLYRDALISCNVIPPLLTLVN 210
Query: 126 YTVP-DVRQYIIQTFYSLCHSPSASYIRNKLRECPSVL----VLVKLFENESLSLRASAV 180
P + I T +LC + +N +VL VL +L +E + +
Sbjct: 211 PQTPLGYLRNITWTLSNLCRN------KNPYPPMSAVLQILPVLTQLMLHEDKDILSDTC 264
Query: 181 KLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWL 240
S L + + D I V +E L+Q++ Y P++ +T L
Sbjct: 265 WAMSYLTDGSN-DRIDVVVKTGLVERLIQLM-----------------YSPELSILTPSL 306
Query: 241 YDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQ 300
G + GTDK Q +A + G+++VL Q
Sbjct: 307 RTVGN-------IVTGTDKQTQ-------------------------AAIDAGVLSVLPQ 334
Query: 301 LLESGTAQTKQLAALSLTQFSKSSNELSSPMPK 333
LL ++ AA +L SN + P P+
Sbjct: 335 LLRHQKPSIQKEAAWAL------SNIAAGPAPQ 361
>YL86_YEAST (Q06708) Hypothetical 99.8 kDa protein in IKI3-RPS29A
intergenic region
Length = 880
Score = 32.0 bits (71), Expect = 3.7
Identities = 38/144 (26%), Positives = 61/144 (41%), Gaps = 10/144 (6%)
Query: 31 RLVSHNDVEMKLVALKALQNL-STLKKNGLEMIQQGAARKLFGILFQHSLPSSSLSEHVA 89
+++ HND M L LK+L N S L + L ++Q + L Q +L +
Sbjct: 514 QILKHND-SMFLTLLKSLSNRDSVLIEKALSLLQSLCSDSNDNYLRQFLQDLLTLFKRDT 572
Query: 90 PIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPD---VRQYIIQTFYSLCHSP 146
++ A + Q +S S E V+ + S + D V+ I +L SP
Sbjct: 573 KLVKTRANFIMRQ-----ISSRLSPERVYKVISSILDNYNDTTFVKMMIQILSTNLITSP 627
Query: 147 SASYIRNKLRECPSVLVLVKLFEN 170
S +RNKLR C + LF++
Sbjct: 628 EMSSLRNKLRTCEDGMFFNSLFKS 651
>STD2_MOUSE (Q9JJG5) SERTA domain-containing protein 2
(Transcriptional regulator interacting with the
PHD-bromodomain 2) (TRIP-Br2)
Length = 309
Score = 32.0 bits (71), Expect = 3.7
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 29 LLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGILFQHSLPSSSLSEHV 88
L++L +H + + L N + L++ E+ Q+G+ R F S PS+SLS+
Sbjct: 45 LMKLYNHRPLTEPSLQKTVLIN-NMLRRIQEELKQEGSLRPAFT---PSSQPSNSLSDSY 100
Query: 89 ------APIIMQLAASTISQDTQTPVSLLESDED 116
AP L ++T + TP SLLE D D
Sbjct: 101 QEAPPPAPHPCDLGSTTPLEACLTPASLLEDDND 134
>IMA1_YEAST (Q02821) Importin alpha subunit (Karyopherin alpha
subunit) (Serine-rich RNA polymerase I suppressor
protein)
Length = 542
Score = 32.0 bits (71), Expect = 3.7
Identities = 64/318 (20%), Positives = 128/318 (40%), Gaps = 28/318 (8%)
Query: 18 EILFDSGILPPLLRLVSHNDVEM-KLVALKALQNLSTLKKNGLEMIQQGAARKLFGILFQ 76
+++ +G++P L+ + N EM +L A AL N+++ +++ A LF L
Sbjct: 124 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 183
Query: 77 HSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYII 136
S + E + +A S D + V + E + LF+ P + +
Sbjct: 184 TG--SVEVKEQAIWALGNVAGD--STDYRDYVLQCNAMEPILGLFNS---NKPSLIRTAT 236
Query: 137 QTFYSLCHS----PSASYIRNKLRECPSVLVLVKLFENESLSLRASAVKLFSCLVESCDE 192
T +LC P S + L P++ L+ + E+L A+ S +
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQAL---PTLAKLIYSMDTETLVDACWAISYLS----DGPQ 289
Query: 193 DAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWLYDAGALSIICKY 252
+AI ++ + + L+++L S + + + + TQ + +AG L +
Sbjct: 290 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349
Query: 253 VQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQL 312
+ K + + + + T N E ++ + +I LV+LLE +TK+
Sbjct: 350 LSS------PKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402
Query: 313 AALSLTQFSKSSNELSSP 330
A +++ + SS L P
Sbjct: 403 ACWAIS--NASSGGLQRP 418
>AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3
Length = 1409
Score = 32.0 bits (71), Expect = 3.7
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 91 IIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVRQYIIQTFYSLCHSPSASY 150
+I + +S + V+LL E +F + L+ +P Q ++ L PS+ +
Sbjct: 285 VIQSRNYNAVSMCILSIVALLYPLEYMFPVIPLLPAYMPSAEQLLLAPTPFLIGVPSSFF 344
Query: 151 IRNKLRECPSVLVLVKLFEN 170
K+RE PS ++LV L N
Sbjct: 345 HHRKIRELPSDVILVDLDTN 364
>IMA1_ARATH (Q96321) Importin alpha-1 subunit (Karyopherin alpha-1
subunit) (KAP alpha)
Length = 532
Score = 31.6 bits (70), Expect = 4.8
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 404 SKVLADENVIPLIIRFLGSPSPGLQEKSLNALERI 438
+KV+ D N +P+ ++ L SPS ++E+++ AL +
Sbjct: 151 TKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNV 185
>YMYD_CAEEL (Q9BIB4) Transcription initiation factor IIA small chain
homolog
Length = 139
Score = 31.2 bits (69), Expect = 6.3
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 302 LESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFWC 339
+ES TK LA+ L QF KS N+ S +PK K +C
Sbjct: 23 MESEGLLTKSLASKVLQQFDKSMNKQISRLPKEKMNFC 60
>STD2_HUMAN (Q14140) SERTA domain-containing protein 2
(Transcriptional regulator interacting with the
PHD-bromodomain 2) (TRIP-Br2)
Length = 314
Score = 31.2 bits (69), Expect = 6.3
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 29 LLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGILFQHSLPSSSLSEHV 88
L++L +H + + L N + L++ E+ Q+G+ R +F Q + S
Sbjct: 45 LMKLYNHRPLTEPSLQKTVLIN-NMLRRIQEELKQEGSLRPMFTPSSQPTTEPSDSYREA 103
Query: 89 APIIMQLAA----------STISQDTQTPVSLLESDEDVFNLFSLVSYTVP 129
P LA+ +T + TP SLLE D+D F + T P
Sbjct: 104 PPAFSHLASPSSHPCDLGSTTPLEACLTPASLLEDDDDTFCTSQAMQPTAP 154
>IMA2_MOUSE (P52293) Importin alpha-2 subunit (Karyopherin alpha-2
subunit) (SRP1-alpha) (RAG cohort protein 1) (Pendulin)
(Pore targeting complex 58 kDa subunit) (PTAC58)
(Importin alpha P1)
Length = 529
Score = 30.8 bits (68), Expect = 8.2
Identities = 24/83 (28%), Positives = 38/83 (44%), Gaps = 7/83 (8%)
Query: 25 ILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEM-IQQGAARKLFGILFQHSLPSSS 83
ILP L+RL+ HND E+ + A+ L+ +EM +++G +L +L LP
Sbjct: 252 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI-- 309
Query: 84 LSEHVAPIIMQLAASTISQDTQT 106
V P + + D QT
Sbjct: 310 ----VTPALRAIGNIVTGTDEQT 328
>HIS2_BACAN (P60534) Phosphoribosyl-ATP pyrophosphatase (EC
3.6.1.31) (PRA-PH)
Length = 107
Score = 30.8 bits (68), Expect = 8.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 167 LFENESLSLRASAVKLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGI 226
LFE R + ++ + S ED ILK + ++C E ++ ++DKEE+V M
Sbjct: 8 LFETIEERKRNPLPESYTNYLFSKGEDKILKKIGEECTEVII--ASKNNDKEELVKEMVD 65
Query: 227 IRY 229
+ Y
Sbjct: 66 VLY 68
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,906,259
Number of Sequences: 164201
Number of extensions: 1922753
Number of successful extensions: 5321
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5292
Number of HSP's gapped (non-prelim): 42
length of query: 488
length of database: 59,974,054
effective HSP length: 114
effective length of query: 374
effective length of database: 41,255,140
effective search space: 15429422360
effective search space used: 15429422360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144389.3