BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144375.7 - phase: 0
(123 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HMGL_SOYBN (P26585) HMG1/2-like protein (SB11 protein) 121 3e-28
HMGL_VICFA (P40620) HMG1/2-like protein 120 5e-28
HMGL_IPONI (P40619) HMG1/2-like protein 118 3e-27
HMGL_WHEAT (P40621) HMG1/2-like protein 108 2e-24
MNBB_MAIZE (P27347) DNA-binding protein MNB1B (HMG1-like protein) 106 1e-23
HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T... 80 6e-16
HMG4_CHICK (P40618) High mobility group protein 4 (HMG-4) (High ... 80 1e-15
HMG1_RAT (P63159) High mobility group protein 1 (HMG-1) (Amphote... 79 1e-15
HMG1_MOUSE (P63158) High mobility group protein 1 (HMG-1) 79 1e-15
HMG1_CRIGR (P07156) High mobility group protein 1 (HMG-1) (Fragm... 79 1e-15
HMG1_CHICK (P36194) High mobility group protein 1 (HMG-1) 79 1e-15
HMG4_HUMAN (O15347) High mobility group protein 4 (HMG-4) (High ... 77 7e-15
SP10_HUMAN (P23497) Nuclear autoantigen Sp-100 (Speckled 100 kDa... 77 9e-15
HMG1_PIG (P12682) High mobility group protein 1 (HMG-1) 77 9e-15
HMG1_HUMAN (P09429) High mobility group protein 1 (HMG-1) 77 9e-15
HMG1_BOVIN (P10103) High mobility group protein 1 (HMG-1) 77 9e-15
HMG4_MOUSE (O54879) High mobility group protein 4 (HMG-4) (High ... 76 1e-14
HMG2_PIG (P17741) High mobility group protein 2 (HMG-2) 76 1e-14
HMG2_HUMAN (P26583) High mobility group protein 2 (HMG-2) 75 2e-14
HMG2_MOUSE (P30681) High mobility group protein 2 (HMG-2) 75 3e-14
>HMGL_SOYBN (P26585) HMG1/2-like protein (SB11 protein)
Length = 152
Score = 121 bits (303), Expect = 3e-28
Identities = 63/117 (53%), Positives = 81/117 (68%), Gaps = 9/117 (7%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK---- 60
KA DP+KPKRP S FF+FM +FR F KE+P+NK VS VGKAAG KW++MSDAEK
Sbjct: 36 KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYV 95
Query: 61 ----KKKMEYVKAIHAYNKKVA-GKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEED 112
K+K+EY K + AYNKK A G + KS SE+ND+DDD++ + EEE++D
Sbjct: 96 AKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152
>HMGL_VICFA (P40620) HMG1/2-like protein
Length = 149
Score = 120 bits (301), Expect = 5e-28
Identities = 57/118 (48%), Positives = 83/118 (70%), Gaps = 10/118 (8%)
Query: 2 ARKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK- 60
A+ K DP+KPKRP S FF+FM+DFR +++K++P+NK V+ VGKA GE+W+S+S+ EK
Sbjct: 34 AKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKA 93
Query: 61 -------KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEE 111
KKK EY + AYNKK+ GK G KS SE+ND+D+D++D E+E+++
Sbjct: 94 PYVDRALKKKEEYEITLQAYNKKLEGKDDEEGSD--KSKSEVNDEDEDEEDEEDEDDD 149
>HMGL_IPONI (P40619) HMG1/2-like protein
Length = 144
Score = 118 bits (295), Expect = 3e-27
Identities = 59/119 (49%), Positives = 82/119 (68%), Gaps = 9/119 (7%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KKA DP+KPKRP S FF+FM DFR +++++P+NK V+VVGKA G+KW+ ++ AEK
Sbjct: 27 KKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPF 86
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
K+K EY K + AYNKK A + +S KS SE+NDDD+D D + E++ EDD+
Sbjct: 87 ISKAEKRKQEYEKNLQAYNKKQAAGAAEEEES-DKSRSEVNDDDEDQDGSGEDDSEDDD 144
>HMGL_WHEAT (P40621) HMG1/2-like protein
Length = 161
Score = 108 bits (271), Expect = 2e-24
Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 18/128 (14%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK---- 60
KA DP+KPKR S FF+FM +FR F+++NP NK V+ VGKAAGE+W+S+S++EK
Sbjct: 34 KAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYV 93
Query: 61 ----KKKMEYVKAIHAYNK----KVAGKKSSSGKSFVKSNSELND------DDDDDDDNE 106
K K EY KAI AYNK A K ++ K + + E +D +DDDDD+
Sbjct: 94 AKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEINDDDDDEGS 153
Query: 107 EEEEEDDE 114
+E+E+DDE
Sbjct: 154 DEDEDDDE 161
>MNBB_MAIZE (P27347) DNA-binding protein MNB1B (HMG1-like protein)
Length = 157
Score = 106 bits (264), Expect = 1e-23
Identities = 59/127 (46%), Positives = 82/127 (64%), Gaps = 19/127 (14%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK---- 60
KA DP+KPKR S FF+FM +FR F+++NP NK V+ VGKAAG++W+S+S+++K
Sbjct: 33 KAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYV 92
Query: 61 ----KKKMEYVKAIHAYNK--KVAGKKS-------SSGKSFVKSNSELNDDDDDDDDNEE 107
K K+EY KAI AYNK A KK+ + KS SE+N D+DD++ E
Sbjct: 93 AKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVN--DEDDEEGSE 150
Query: 108 EEEEDDE 114
E+E+DDE
Sbjct: 151 EDEDDDE 157
>HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T1)
(HMG-1)
Length = 204
Score = 80.5 bits (197), Expect = 6e-16
Identities = 45/122 (36%), Positives = 69/122 (55%), Gaps = 11/122 (9%)
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+KK DP+ PKRP S FF+F +DFR + + E P + V K GEKW +++ +K
Sbjct: 84 KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLTAEDKVP 142
Query: 61 ------KKKMEYVKAIHAYNKKVAGKKSSSGKSFV--KSNSELNDDDDDDDDNEEEEEED 112
+ K +Y K I AY K S K+ K + + +DDDDDD+D++++++ED
Sbjct: 143 YEKKASRLKEKYEKDITAYRNKGKVPVSMPAKAAAPAKDDDDDDDDDDDDEDDDDDDDED 202
Query: 113 DE 114
DE
Sbjct: 203 DE 204
Score = 35.8 bits (81), Expect = 0.017
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 9 DPSKPKRPQSPFFLFMSDFRVRFRKENPD-NKYVSVVGKAAGEKWRSMSDAEKKK----- 62
DP KP+ S + F+ R +K++P+ + S K E+W++MS EK K
Sbjct: 4 DPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLA 63
Query: 63 ---KMEYVKAIHAYNKKVAGKK 81
K+ Y + + +Y KK
Sbjct: 64 KLDKVRYEREMRSYIPPKGEKK 85
>HMG4_CHICK (P40618) High mobility group protein 4 (HMG-4) (High
mobility group protein 2a) (HMG-2a)
Length = 201
Score = 79.7 bits (195), Expect = 1e-15
Identities = 43/117 (36%), Positives = 67/117 (56%), Gaps = 8/117 (6%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEKKK-K 63
K K DP+ PKRP S FFLF S+FR + + NP + V K GE W ++SD EK+
Sbjct: 84 KKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDGEKQPYN 142
Query: 64 MEYVKAIHAYNKKVAGKKS------SSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
+ K Y K VA KS + G + + ++ ++D++++++EEEE+EDD+
Sbjct: 143 NKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEEEEEDEEEEDEDDD 199
Score = 45.1 bits (105), Expect = 3e-05
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 6 AKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKY-VSVVGKAAGEKWRSMSDAEKKK-- 62
AK DP KPK S + F+ R +K+NP+ + K E+W++MS EK K
Sbjct: 1 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFD 60
Query: 63 ------KMEYVKAIHAYNKKVAGKK 81
K+ Y + + Y GKK
Sbjct: 61 EMAKADKVRYDREMKDYGPAKGGKK 85
>HMG1_RAT (P63159) High mobility group protein 1 (HMG-1)
(Amphoterin) (Heparin-binding protein p30)
Length = 214
Score = 79.3 bits (194), Expect = 1e-15
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 16/124 (12%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KK DP+ PKRP S FFLF S++R + + E+P + V K GE W + + +K
Sbjct: 85 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 143
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKS-----NSELNDDDDDDDDNEEEEE 110
K K +Y K I AY K GK ++ K VK+ E DD++D++D EEEEE
Sbjct: 144 EKKAAKLKEKYEKDIAAYRAK--GKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEE 201
Query: 111 EDDE 114
E+DE
Sbjct: 202 EEDE 205
Score = 41.2 bits (95), Expect = 4e-04
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 7 KSDPSKPKRPQSPFFLFMSDFRVRFRKENPD-NKYVSVVGKAAGEKWRSMSDAEKKKKME 65
K DP KP+ S + F+ R +K++PD + S K E+W++MS EK K +
Sbjct: 2 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 66 YVKA 69
KA
Sbjct: 62 MAKA 65
>HMG1_MOUSE (P63158) High mobility group protein 1 (HMG-1)
Length = 214
Score = 79.3 bits (194), Expect = 1e-15
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 16/124 (12%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KK DP+ PKRP S FFLF S++R + + E+P + V K GE W + + +K
Sbjct: 85 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 143
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKS-----NSELNDDDDDDDDNEEEEE 110
K K +Y K I AY K GK ++ K VK+ E DD++D++D EEEEE
Sbjct: 144 EKKAAKLKEKYEKDIAAYRAK--GKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEE 201
Query: 111 EDDE 114
E+DE
Sbjct: 202 EEDE 205
Score = 41.2 bits (95), Expect = 4e-04
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 7 KSDPSKPKRPQSPFFLFMSDFRVRFRKENPD-NKYVSVVGKAAGEKWRSMSDAEKKKKME 65
K DP KP+ S + F+ R +K++PD + S K E+W++MS EK K +
Sbjct: 2 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 66 YVKA 69
KA
Sbjct: 62 MAKA 65
>HMG1_CRIGR (P07156) High mobility group protein 1 (HMG-1)
(Fragment)
Length = 180
Score = 79.3 bits (194), Expect = 1e-15
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 16/124 (12%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KK DP+ PKRP S FFLF S++R + + E+P + V K GE W + + +K
Sbjct: 51 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 109
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKS-----NSELNDDDDDDDDNEEEEE 110
K K +Y K I AY K GK ++ K VK+ E DD++D++D EEEEE
Sbjct: 110 EKKAAKLKEKYEKDIAAYRAK--GKPDAAKKGVVKAEKSKKKKEEEDDEEDEEDEEEEEE 167
Query: 111 EDDE 114
E+DE
Sbjct: 168 EEDE 171
>HMG1_CHICK (P36194) High mobility group protein 1 (HMG-1)
Length = 200
Score = 79.3 bits (194), Expect = 1e-15
Identities = 43/117 (36%), Positives = 67/117 (56%), Gaps = 8/117 (6%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEKKK-K 63
K K DP+ PKRP S FFLF S+FR + + NP + V K GE W ++SD EK+
Sbjct: 83 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDGEKQPYN 141
Query: 64 MEYVKAIHAYNKKVAGKKS------SSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
+ K Y K VA KS + G + + ++ ++D++++++EEEE+EDD+
Sbjct: 142 NKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEEEDEEEEEDEEEEDEDDD 198
Score = 40.8 bits (94), Expect = 5e-04
Identities = 25/84 (29%), Positives = 35/84 (40%), Gaps = 8/84 (9%)
Query: 6 AKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEKKK--- 62
AK DP KPK S + F+ R +K + K E+W++MS EK K
Sbjct: 1 AKGDPKKPKGKMSAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDE 60
Query: 63 -----KMEYVKAIHAYNKKVAGKK 81
K+ Y + + Y GKK
Sbjct: 61 MAKADKVRYDREMKDYGPAKGGKK 84
>HMG4_HUMAN (O15347) High mobility group protein 4 (HMG-4) (High
mobility group protein 2a) (HMG-2a)
Length = 199
Score = 77.0 bits (188), Expect = 7e-15
Identities = 44/117 (37%), Positives = 65/117 (54%), Gaps = 8/117 (6%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEKKKKM 64
K K DP+ PKRP S FFLF S+FR + + NP + V K GE W +++D+EK+ +
Sbjct: 84 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLNDSEKQPYI 142
Query: 65 -EYVKAIHAYNKKVAGKKS------SSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
+ K Y K VA KS + G + V +D++ +++ EEEEEE+DE
Sbjct: 143 TKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEQEEEEEEEEEEEDE 199
Score = 43.1 bits (100), Expect = 1e-04
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 6 AKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKY-VSVVGKAAGEKWRSMSDAEKKK-- 62
AK DP KPK S + F+ R +K+NP+ + K E+W+++S EK K
Sbjct: 1 AKGDPKKPKGKTSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFD 60
Query: 63 ------KMEYVKAIHAYNKKVAGKK 81
K+ Y + + Y GKK
Sbjct: 61 EMAKADKVRYDREMKDYGPAKGGKK 85
>SP10_HUMAN (P23497) Nuclear autoantigen Sp-100 (Speckled 100 kDa)
(Nuclear dot-associated Sp100 protein) (Lysp100b)
Length = 879
Score = 76.6 bits (187), Expect = 9e-15
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 14/123 (11%)
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+KK DP+ PKRP FFLF S++R + + E+P VV K AG W + + A+K
Sbjct: 759 KKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG-MWNNTAAADKQF 817
Query: 61 ------KKKMEYVKAIHAYNKKVAGKKSSSGKSFV---KSNSELNDDDDDDDDNEEEEEE 111
K K +Y K I AY K GK +S+ K V KS + +++D++D+ EEE EE
Sbjct: 818 YEKKAAKLKEKYKKDIAAYRAK--GKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENEE 875
Query: 112 DDE 114
DD+
Sbjct: 876 DDD 878
>HMG1_PIG (P12682) High mobility group protein 1 (HMG-1)
Length = 214
Score = 76.6 bits (187), Expect = 9e-15
Identities = 47/124 (37%), Positives = 68/124 (53%), Gaps = 16/124 (12%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KK DP+ PKRP S FFLF S++R + + E+P + V K GE W + + +K
Sbjct: 85 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKHPY 143
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKS-----NSELNDDDDDDDDNEEEEE 110
K K +Y K I AY K GK ++ K VK+ E +D++D++D EEEE+
Sbjct: 144 EKKAAKLKEKYEKDIAAYRAK--GKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 201
Query: 111 EDDE 114
E+DE
Sbjct: 202 EEDE 205
Score = 41.2 bits (95), Expect = 4e-04
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 7 KSDPSKPKRPQSPFFLFMSDFRVRFRKENPD-NKYVSVVGKAAGEKWRSMSDAEKKKKME 65
K DP KP+ S + F+ R +K++PD + S K E+W++MS EK K +
Sbjct: 2 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 66 YVKA 69
KA
Sbjct: 62 MAKA 65
>HMG1_HUMAN (P09429) High mobility group protein 1 (HMG-1)
Length = 214
Score = 76.6 bits (187), Expect = 9e-15
Identities = 47/124 (37%), Positives = 68/124 (53%), Gaps = 16/124 (12%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KK DP+ PKRP S FFLF S++R + + E+P + V K GE W + + +K
Sbjct: 85 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 143
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKS-----NSELNDDDDDDDDNEEEEE 110
K K +Y K I AY K GK ++ K VK+ E +D++D++D EEEE+
Sbjct: 144 EKKAAKLKEKYEKDIAAYRAK--GKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 201
Query: 111 EDDE 114
E+DE
Sbjct: 202 EEDE 205
Score = 41.2 bits (95), Expect = 4e-04
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 7 KSDPSKPKRPQSPFFLFMSDFRVRFRKENPD-NKYVSVVGKAAGEKWRSMSDAEKKKKME 65
K DP KP+ S + F+ R +K++PD + S K E+W++MS EK K +
Sbjct: 2 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 66 YVKA 69
KA
Sbjct: 62 MAKA 65
>HMG1_BOVIN (P10103) High mobility group protein 1 (HMG-1)
Length = 214
Score = 76.6 bits (187), Expect = 9e-15
Identities = 47/124 (37%), Positives = 68/124 (53%), Gaps = 16/124 (12%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KK DP+ PKRP S FFLF S++R + + E+P + V K GE W + + +K
Sbjct: 85 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPY 143
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKS-----NSELNDDDDDDDDNEEEEE 110
K K +Y K I AY K GK ++ K VK+ E +D++D++D EEEE+
Sbjct: 144 EKKAAKLKEKYEKDIAAYRAK--GKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 201
Query: 111 EDDE 114
E+DE
Sbjct: 202 EEDE 205
Score = 41.2 bits (95), Expect = 4e-04
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 7 KSDPSKPKRPQSPFFLFMSDFRVRFRKENPD-NKYVSVVGKAAGEKWRSMSDAEKKKKME 65
K DP KP+ S + F+ R +K++PD + S K E+W++MS EK K +
Sbjct: 2 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 66 YVKA 69
KA
Sbjct: 62 MAKA 65
>HMG4_MOUSE (O54879) High mobility group protein 4 (HMG-4) (High
mobility group protein 2a) (HMG-2a)
Length = 199
Score = 76.3 bits (186), Expect = 1e-14
Identities = 44/117 (37%), Positives = 65/117 (54%), Gaps = 8/117 (6%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEKKKKM 64
K K DP+ PKRP S FFLF S+FR + + NP + V K GE W ++SD EK+ +
Sbjct: 84 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLSDNEKQPYV 142
Query: 65 -EYVKAIHAYNKKVAGKKS------SSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
+ K Y K VA KS + G + V ++++++++ EEEEEE+DE
Sbjct: 143 TKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEEEEEEEEEDE 199
Score = 45.4 bits (106), Expect = 2e-05
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 6 AKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKY-VSVVGKAAGEKWRSMSDAEKKK-- 62
AK DP KPK S + F+ R +K+NP+ + K E+W++MS EK K
Sbjct: 1 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFD 60
Query: 63 ------KMEYVKAIHAYNKKVAGKK 81
K+ Y + + Y GKK
Sbjct: 61 EMAKADKVRYDREMKDYGPAKGGKK 85
>HMG2_PIG (P17741) High mobility group protein 2 (HMG-2)
Length = 209
Score = 76.3 bits (186), Expect = 1e-14
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+K K DP+ PKRP S FFLF S+ R + + E+P + K GE W S +K
Sbjct: 84 KKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQSAKDKQP 142
Query: 61 ------KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
K K +Y K I AY K G+ G + + N+ +D++++ EEEE+ED+E
Sbjct: 143 YEQKAAKLKEKYEKDIAAYRAKGKGEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEDEDEE 202
Score = 41.2 bits (95), Expect = 4e-04
Identities = 20/64 (31%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Query: 7 KSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKY-VSVVGKAAGEKWRSMSDAEKKKKME 65
K DP+KP+ S + F+ R +K++PD+ + K E+W++MS EK K +
Sbjct: 2 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 61
Query: 66 YVKA 69
K+
Sbjct: 62 MAKS 65
>HMG2_HUMAN (P26583) High mobility group protein 2 (HMG-2)
Length = 208
Score = 75.5 bits (184), Expect = 2e-14
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+K K DP+ PKRP S FFLF S+ R + + E+P + K GE W S +K
Sbjct: 84 KKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQP 142
Query: 61 ------KKKMEYVKAIHAY---NKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEE 111
K K +Y K I AY K AGKK + K +E D+++++++ +E+EEE
Sbjct: 143 YEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEE 202
Query: 112 DDE 114
+DE
Sbjct: 203 EDE 205
Score = 41.2 bits (95), Expect = 4e-04
Identities = 20/64 (31%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Query: 7 KSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKY-VSVVGKAAGEKWRSMSDAEKKKKME 65
K DP+KP+ S + F+ R +K++PD+ + K E+W++MS EK K +
Sbjct: 2 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 61
Query: 66 YVKA 69
K+
Sbjct: 62 MAKS 65
>HMG2_MOUSE (P30681) High mobility group protein 2 (HMG-2)
Length = 209
Score = 74.7 bits (182), Expect = 3e-14
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+K K DP+ PKRP S FFLF S+ R + + E+P + K GE W S +K
Sbjct: 84 KKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLS-IGDTAKKLGEMWSEQSAKDKQP 142
Query: 61 ------KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
K K +Y K I AY K + G + + N+ +D++++ EEEEEEDDE
Sbjct: 143 YEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEEEDDE 202
Score = 41.2 bits (95), Expect = 4e-04
Identities = 20/64 (31%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Query: 7 KSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKY-VSVVGKAAGEKWRSMSDAEKKKKME 65
K DP+KP+ S + F+ R +K++PD+ + K E+W++MS EK K +
Sbjct: 2 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 61
Query: 66 YVKA 69
K+
Sbjct: 62 LAKS 65
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,859,920
Number of Sequences: 164201
Number of extensions: 672644
Number of successful extensions: 19610
Number of sequences better than 10.0: 1131
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 335
Number of HSP's that attempted gapping in prelim test: 8361
Number of HSP's gapped (non-prelim): 5093
length of query: 123
length of database: 59,974,054
effective HSP length: 99
effective length of query: 24
effective length of database: 43,718,155
effective search space: 1049235720
effective search space used: 1049235720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC144375.7