BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144345.7 - phase: 0 /pseudo
         (366 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...    98  4e-20
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog               33  1.1
Y688_TREPA (P96129) Hypothetical protein TP0688                        31  5.6
ROB2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor                     30  9.6

>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score = 97.8 bits (242), Expect = 4e-20
 Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 10/157 (6%)

Query: 47  SIPVYFLSFFKAPSGIISTLESLFNAFFWGGCEDIRKITWIKWETVC-SRKGEGGLGVRR 105
           ++PVY +S F+    +   L S    F+W  CE+ RKI+W+ W+ +C S++ +GGLG R 
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 106 LREFNLALLGKWWWRILQERGTLWYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDG 165
           L  FN ALL K  +RI+ +  TL  R+L +RY      + CS     S  W++I+  R+ 
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 166 VGQIDSGWMLDNISRRVGNGLSTLFWVDPW-LEEKPL 201
           + +         + R +G+G+ T  W+D W ++E PL
Sbjct: 122 LSR--------GLLRTIGDGIHTKVWLDRWIMDETPL 150


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 26/109 (23%), Positives = 46/109 (41%), Gaps = 9/109 (8%)

Query: 15  PLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSF--FKAPSGIISTLESLFNA 72
           PL++ IK   + WK+   S  GR+ ++K  +    +Y  +    K P    + LE     
Sbjct: 786 PLLNEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLK 845

Query: 73  FFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGK--WWW 119
           F W      +K   I   T+  +   GG+ +   + +  A + K  W+W
Sbjct: 846 FIWN-----QKRAHIAKSTLSQKNKAGGITLPDFKLYYKATVTKTAWYW 889


>Y688_TREPA (P96129) Hypothetical protein TP0688
          Length = 337

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 46  SSIPVYF---LSFFKAPSGIISTLESLFNAFFWGGCEDIRKITW 86
           + +PV++    S F    GI  T+E   N FF+G C+ +   TW
Sbjct: 131 TGMPVFYGPHFSTFGMEKGIEFTIECFKNTFFYGRCDILASETW 174


>ROB2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor
          Length = 1378

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 122 LQERGTLWYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNI 178
           +QE+GTL  + L  R  + G   C +    G   W  +LDV +    I   + L ++
Sbjct: 467 IQEQGTLQIKNL--RISDTGTYTCVATSSSGETSWSAVLDVTESGATISKNYDLSDL 521


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.350    0.159    0.603 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,369,510
Number of Sequences: 164201
Number of extensions: 1768334
Number of successful extensions: 6130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6125
Number of HSP's gapped (non-prelim): 6
length of query: 366
length of database: 59,974,054
effective HSP length: 112
effective length of query: 254
effective length of database: 41,583,542
effective search space: 10562219668
effective search space used: 10562219668
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 66 (30.0 bits)