BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC143338.3 - phase: 0 
         (446 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

VE1_HPV5B (P26542) Replication protein E1                              32  3.3
PTK1_YEAST (P36002) Serine/threonine-protein kinase PTK1/STK1 (E...    32  4.3
AMD2_RAT (Q02356) AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase is...    31  7.4
AMD2_HUMAN (Q01433) AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase ...    31  7.4

>VE1_HPV5B (P26542) Replication protein E1
          Length = 606

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 29/145 (20%)

Query: 22  LVFIAFSTLHNGSTIHKFHENPLHIHQEQASSTTYVKPNLPNHLKKSQEILDRYSRCNST 81
           L  + F    N  T+HK   + L++H++Q  S        P  L+ +   L  Y  C  +
Sbjct: 232 LYLLCFKAGKNRGTVHKLITSMLNVHEQQILSE-------PPKLRNTAAALFWYKGCMGS 284

Query: 82  VGYSGRKIARRGGSKSSSNRRVSSESCDVFSG--KWVFDNASYPLYNESDCPYMSDQLAC 139
             +S          ++    + +  S   FS   +W FDN            ++ D+   
Sbjct: 285 GAFSHGPYPDWIAQQTILGHKSAEASTFDFSAMVQWAFDN------------HLLDE--- 329

Query: 140 NKHGRTDLGYQHWRWQPHDCDLKRW 164
                 D+ YQ+ R  P D +   W
Sbjct: 330 -----PDIAYQYARLAPEDANAVAW 349


>PTK1_YEAST (P36002) Serine/threonine-protein kinase PTK1/STK1 (EC
           2.7.1.37)
          Length = 649

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 32  NGSTIHKFHENPLHIHQEQASSTTYVKPNLPNHLKKSQEILDRYSRCNS--TVGYSGRKI 89
           +G+ + K    P   H    + +    P LPN LK S+         NS  ++  +  KI
Sbjct: 34  HGNKLKKKASLPPDFHSTSTNDSESSSPKLPNSLKTSRRANSFAHTTNSKRSLSSASTKI 93

Query: 90  ARRGGSKSSSNR--RVSSESCDVFSGKWVFDNASYPLYNESDCPYMSDQLACNKHGRTDL 147
               GS +S +R  R SS S ++ + K+  +   Y  Y  S        ++ +     DL
Sbjct: 94  LPPAGSSTSISRGNRHSSTSRNLSNSKFSSERLVYNPYGVSTPSTSLSSVSTSMKKDPDL 153

Query: 148 GY 149
           G+
Sbjct: 154 GF 155


>AMD2_RAT (Q02356) AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase
          isoform L) (Fragment)
          Length = 88

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 9  KKVPIFPFIVLLLLVFIAFSTLHNGSTIHKFHENPL 44
          +K P+  ++  L  + IA S L N S    +H NPL
Sbjct: 29 RKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPL 64


>AMD2_HUMAN (Q01433) AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase
           isoform L)
          Length = 879

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 9   KKVPIFPFIVLLLLVFIAFSTLHNGSTIHKFHENPL 44
           +K P+  ++  L  + IA S L N S    +H NPL
Sbjct: 714 RKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPL 749


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.318    0.134    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,473,281
Number of Sequences: 164201
Number of extensions: 2470839
Number of successful extensions: 5328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5323
Number of HSP's gapped (non-prelim): 7
length of query: 446
length of database: 59,974,054
effective HSP length: 113
effective length of query: 333
effective length of database: 41,419,341
effective search space: 13792640553
effective search space used: 13792640553
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)