BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC143337.8 - phase: 0
(97 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
R11D_LOTJA (Q40194) Ras-related protein Rab11D 176 7e-45
R11E_LOTJA (Q40195) Ras-related protein Rab11E 157 3e-39
YPT3_NICPL (Q01111) Ras-related protein YPT3 147 3e-36
ARA2_ARATH (P28185) Ras-related protein ARA-2 145 1e-35
RB1B_ARATH (Q39222) Ras-related protein Rab11 139 9e-34
RIC2_ORYSA (P40393) Ras-related protein RIC2 137 4e-33
R11B_TOBAC (Q40521) Ras-related protein Rab11B 119 1e-27
R11C_LOTJA (Q40193) Ras-related protein Rab11C 104 3e-23
RB1A_ARATH (Q96283) Ras-related protein Rab11A 103 1e-22
RAB2_BETVU (Q39434) Ras-related protein Rab2BV 101 3e-22
R11A_TOBAC (Q40523) Ras-related protein Rab11A 100 6e-22
RB1C_ARATH (O04486) Ras-related protein Rab11C 99 1e-21
RGP1_ORYSA (P25766) Ras-related protein RGP1 (GTP-binding regula... 95 3e-20
RGP2_ORYSA (Q40723) Ras-related protein RGP2 (GTP-binding regula... 94 6e-20
R11A_LOTJA (Q40191) Ras-related protein Rab11A 92 3e-19
YPT6_CHLRE (Q39572) Ras-related protein YPTC6 90 1e-18
R11D_TOBAC (Q40522) Ras-related protein Rab11D 89 2e-18
R11B_DISOM (P22129) Ras-related protein Rab-11B (ORA3) 88 3e-18
YPT3_SCHPO (P17610) Ras-related protein ypt3 (RAB) 88 4e-18
R11B_RAT (O35509) Ras-related protein Rab-11B 87 6e-18
>R11D_LOTJA (Q40194) Ras-related protein Rab11D
Length = 218
Score = 176 bits (447), Expect = 7e-45
Identities = 89/96 (92%), Positives = 93/96 (96%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVL+QIYRIVSK+
Sbjct: 122 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKR 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
AVEAG+ GSSS +PS GQTINVKEDSSVLKRFGCCS
Sbjct: 182 AVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCS 217
>R11E_LOTJA (Q40195) Ras-related protein Rab11E
Length = 218
Score = 157 bits (398), Expect = 3e-39
Identities = 80/97 (82%), Positives = 88/97 (90%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLV V TEDGK+FAE+ESLYFMETSALEATNVENAF+EVL+QIYRIVSK+
Sbjct: 122 MLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKR 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVEAG+ S+S VPS GQTINV EDSSVL R+ CCSN
Sbjct: 182 AVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218
>YPT3_NICPL (Q01111) Ras-related protein YPT3
Length = 218
Score = 147 bits (372), Expect = 3e-36
Identities = 72/97 (74%), Positives = 84/97 (86%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLVAV T++ K AERE LYFMETSALEATNVENAFTE L+QIYRIVSKK
Sbjct: 122 MLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVEAG+ G++SS P G+TIN+K++ S K+FGCCS+
Sbjct: 182 AVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218
>ARA2_ARATH (P28185) Ras-related protein ARA-2
Length = 216
Score = 145 bits (367), Expect = 1e-35
Identities = 73/97 (75%), Positives = 85/97 (87%), Gaps = 2/97 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNK DLRHLVAV TE+ K+FAERESLYFMETSAL+ATNVENAFTEVL+QI++IVSK+
Sbjct: 122 MLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKR 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
+V+ GG S+ +P G+TINVKED SVLKR GCCSN
Sbjct: 182 SVDG--GGESADLPGKGETINVKEDGSVLKRMGCCSN 216
>RB1B_ARATH (Q39222) Ras-related protein Rab11
Length = 216
Score = 139 bits (351), Expect = 9e-34
Identities = 73/97 (75%), Positives = 83/97 (85%), Gaps = 2/97 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHL+AVPTEDGKS+AE+ESL FMETSALEATNVE+AF EVL+QIYRI SKK
Sbjct: 122 MLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
VEAGE G ++SVP G+ I VK D S LK+ GCCSN
Sbjct: 182 QVEAGEDG-NASVPK-GEKIEVKNDVSALKKLGCCSN 216
>RIC2_ORYSA (P40393) Ras-related protein RIC2
Length = 217
Score = 137 bits (346), Expect = 4e-33
Identities = 68/96 (70%), Positives = 82/96 (84%), Gaps = 2/96 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV T++GK+FAERESLYFMETSALE+TNVENAF EVL+QIYRIVSK+
Sbjct: 123 MLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
+VEAG+ S P G+ IN+K+D S +K+ GCCS
Sbjct: 183 SVEAGDDAGSG--PGKGEKINIKDDVSAVKKGGCCS 216
>R11B_TOBAC (Q40521) Ras-related protein Rab11B
Length = 217
Score = 119 bits (298), Expect = 1e-27
Identities = 61/98 (62%), Positives = 81/98 (82%), Gaps = 4/98 (4%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNK+DLRHL AV TED K+FAERE+ +FMETSALE+ NVENAFTEVL++IY++V +K
Sbjct: 123 MLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRK 182
Query: 61 AVEAGEGGSSSSVPSVGQTINV-KEDSSVLKRFGCCSN 97
A+E G+ +++P GQTINV K+D S +K+ GCCS+
Sbjct: 183 ALEVGD--DPAALPK-GQTINVGKDDVSAVKKVGCCSS 217
>R11C_LOTJA (Q40193) Ras-related protein Rab11C
Length = 216
Score = 104 bits (260), Expect = 3e-23
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
M+ GNKSDL HL AV +DG + +E+E L F+ETSALEATN+E AF +L++IY IVSKK
Sbjct: 121 MMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKK 180
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
A+ A E + +SVP G TINV + S K+ GCCS
Sbjct: 181 ALAAQEATAGASVPGQGTTINVADTSGNTKK-GCCS 215
>RB1A_ARATH (Q96283) Ras-related protein Rab11A
Length = 217
Score = 103 bits (256), Expect = 1e-22
Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 2/98 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
M+ GNKSDL HL +V EDG+S AE+E L F+ETSALEATNVE AF +L +IY I+SKK
Sbjct: 121 MMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKK 180
Query: 61 AVEAGE-GGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
A+ A E ++S++P G TINV + S KR CCS+
Sbjct: 181 ALAAQEAAAANSAIPGQGTTINVDDTSGGAKR-ACCSS 217
>RAB2_BETVU (Q39434) Ras-related protein Rab2BV
Length = 214
Score = 101 bits (252), Expect = 3e-22
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 3/96 (3%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
M+ GNKSDL+HL AV EDG++ AE+E L F+ETSALEA N+E AF +L++IY I+SKK
Sbjct: 121 MMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKK 180
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
A+ A E +SS++P G TINV D+S +R CCS
Sbjct: 181 ALAAQE--ASSNLPGQGTTINV-ADASANQRRSCCS 213
>R11A_TOBAC (Q40523) Ras-related protein Rab11A
Length = 216
Score = 100 bits (249), Expect = 6e-22
Identities = 50/96 (52%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
+L GNKSDL+HL AV +D ++ ++E L F+ETSALEA NV+ AF +L+ IY I+SKK
Sbjct: 121 ILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKK 180
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
A+ A E +S+++P G TINV ++S+ +KR GCCS
Sbjct: 181 ALAAQEAAASTALPGQGTTINVSDNSANVKR-GCCS 215
>RB1C_ARATH (O04486) Ras-related protein Rab11C
Length = 217
Score = 99.4 bits (246), Expect = 1e-21
Identities = 50/97 (51%), Positives = 72/97 (73%), Gaps = 1/97 (1%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNK+DL+HL AV TED +S+AE+E L F+ETSALEA NVE AF +LS++YRI+SKK
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKK 180
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
++ + + +++++ GQTI+V S + CCS+
Sbjct: 181 SISSDQTTANANIKE-GQTIDVAATSESNAKKPCCSS 216
>RGP1_ORYSA (P25766) Ras-related protein RGP1 (GTP-binding
regulatory protein RGP1)
Length = 226
Score = 95.1 bits (235), Expect = 3e-20
Identities = 51/76 (67%), Positives = 59/76 (77%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDL L VPTED K FAERE+L+FMETSALE+TN+ENAF VL++IYRIVSKK
Sbjct: 127 MLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNLENAFMTVLTEIYRIVSKK 186
Query: 61 AVEAGEGGSSSSVPSV 76
+ A E SS S+
Sbjct: 187 NLVANEEVDSSGNSSL 202
>RGP2_ORYSA (Q40723) Ras-related protein RGP2 (GTP-binding
regulatory protein RGP2)
Length = 217
Score = 94.0 bits (232), Expect = 6e-20
Identities = 47/97 (48%), Positives = 71/97 (72%), Gaps = 2/97 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
M++GNKSDL HL AV ++GK+ AE+E L+F+ETSA+EA NVE AF +++++Y IV++K
Sbjct: 121 MMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRK 180
Query: 61 AVEAGEGGSSS-SVPSVGQTINVKEDSSVLKRFGCCS 96
A+ A E ++S +PS G+TI++ + KR CCS
Sbjct: 181 ALAAKEAAAASRPLPSQGKTISIDSAAGNTKR-ACCS 216
>R11A_LOTJA (Q40191) Ras-related protein Rab11A
Length = 226
Score = 91.7 bits (226), Expect = 3e-19
Identities = 52/98 (53%), Positives = 68/98 (69%), Gaps = 3/98 (3%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
+LIGNK DL + VPTED K FAE+E L+F+ETSALEATNVE+AFT VL++IY IV+KK
Sbjct: 126 ILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKK 185
Query: 61 AVEAGEG-GSSSSVPSVGQTINVKEDSSVL--KRFGCC 95
++ A E G+ +S GQ I + + + KR CC
Sbjct: 186 SLAADESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCC 223
>YPT6_CHLRE (Q39572) Ras-related protein YPTC6
Length = 216
Score = 89.7 bits (221), Expect = 1e-18
Identities = 49/101 (48%), Positives = 66/101 (64%), Gaps = 10/101 (9%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDL+HL V TE ++F ERE L F+ETSALE+TNVE AF ++L++IY IVSKK
Sbjct: 121 MLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKK 180
Query: 61 AVEAGEGGSSSSVPSVGQ-----TINVKEDSSVLKRFGCCS 96
++ S + P +G+ I+ D K+ GCCS
Sbjct: 181 VLD-----SEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216
>R11D_TOBAC (Q40522) Ras-related protein Rab11D
Length = 222
Score = 88.6 bits (218), Expect = 2e-18
Identities = 48/99 (48%), Positives = 70/99 (70%), Gaps = 2/99 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNK+DL AVPTED K FA++E L+F+ETSA+EATN+E+AF VL++I+ IV+KK
Sbjct: 124 MLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKK 183
Query: 61 AVEAGEGGSSSSVPSV-GQTINVKEDSSVL-KRFGCCSN 97
+ A + S+ + S+ G+ I V V+ ++ CCS+
Sbjct: 184 NLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACCSS 222
>R11B_DISOM (P22129) Ras-related protein Rab-11B (ORA3)
Length = 218
Score = 88.2 bits (217), Expect = 3e-18
Identities = 45/98 (45%), Positives = 64/98 (64%), Gaps = 1/98 (1%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHL AVPT++ ++FAE+ +L F+ETSAL++TNVE AF +L++IYRIVS+K
Sbjct: 120 MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179
Query: 61 AVEAGEGGSSSSVPSVGQ-TINVKEDSSVLKRFGCCSN 97
+ S +V ++ D + CC N
Sbjct: 180 QISDRSAHDESPGNNVVDISVPPTTDGQKSNKLQCCQN 217
>YPT3_SCHPO (P17610) Ras-related protein ypt3 (RAB)
Length = 214
Score = 87.8 bits (216), Expect = 4e-18
Identities = 43/82 (52%), Positives = 63/82 (76%), Gaps = 3/82 (3%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNK+DL HL AV TE+ ++FA +L F+ETSA++A+NVE AF VL++I+RIVS +
Sbjct: 119 MLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNR 178
Query: 61 AVEAGEGGSSSSVPSVGQTINV 82
++EAG+ G P+ GQT+N+
Sbjct: 179 SLEAGDDGVH---PTAGQTLNI 197
>R11B_RAT (O35509) Ras-related protein Rab-11B
Length = 218
Score = 87.4 bits (215), Expect = 6e-18
Identities = 45/98 (45%), Positives = 64/98 (64%), Gaps = 1/98 (1%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHL AVPT++ ++FAE+ +L F+ETSAL++TNVE AF +L++IYRIVS+K
Sbjct: 120 MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 179
Query: 61 AV-EAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
+ + S V ++ D + CC N
Sbjct: 180 QIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQN 217
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.127 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,065,450
Number of Sequences: 164201
Number of extensions: 307065
Number of successful extensions: 1041
Number of sequences better than 10.0: 340
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 341
length of query: 97
length of database: 59,974,054
effective HSP length: 73
effective length of query: 24
effective length of database: 47,987,381
effective search space: 1151697144
effective search space used: 1151697144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC143337.8