BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142526.4 + phase: 0
(187 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CATR_ASPNG (P55303) Catalase R (EC 1.11.1.6) 33 0.50
YKS7_YEAST (P34231) Hypothetical 81.0 kDa protein in PXA2-MTR2 i... 32 0.65
PTRA_RAT (Q03348) Protein-tyrosine phosphatase alpha precursor (... 32 0.85
DNLI_THEFM (Q9HH07) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo... 32 0.85
YF03_PASMU (Q9CKV2) Hypothetical protein PM1503 32 1.1
PTRA_MOUSE (P18052) Protein-tyrosine phosphatase alpha precursor... 31 1.9
OTCC_STAAW (Q8NUK8) Ornithine carbamoyltransferase, catabolic (E... 31 1.9
OTCC_STAAN (P65602) Ornithine carbamoyltransferase, catabolic (E... 31 1.9
OTCC_STAAM (P65601) Ornithine carbamoyltransferase, catabolic (E... 31 1.9
SSN6_YEAST (P14922) Glucose repression mediator protein 30 3.2
PTRA_HUMAN (P18433) Protein-tyrosine phosphatase alpha precursor... 30 4.2
MY15_MOUSE (Q9QZZ4) Myosin XV (Unconventional myosin-15) 30 4.2
GTR3_MOUSE (P32037) Solute carrier family 2, facilitated glucose... 29 5.5
ILAP_RAT (Q63621) Interleukin-1 receptor accessory protein precu... 29 7.2
ILAP_MOUSE (Q61730) Interleukin-1 receptor accessory protein pre... 29 7.2
YQ19_VIBPA (Q87LJ3) Hypothetical UPF0235 protein VP2619 28 9.4
OTC2_STAEP (Q8CMW2) Ornithine carbamoyltransferase 2, catabolic ... 28 9.4
LMG1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2 ... 28 9.4
GTR3_DROME (P53403) Glucose transporter type 3 (Glucose transpor... 28 9.4
FIBP_ADEP3 (Q83457) Fiber protein 28 9.4
>CATR_ASPNG (P55303) Catalase R (EC 1.11.1.6)
Length = 730
Score = 32.7 bits (73), Expect = 0.50
Identities = 30/121 (24%), Positives = 48/121 (38%), Gaps = 17/121 (14%)
Query: 31 IIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNSTTVNFTF-----------SQYTSVKN 79
+++ + F K P + V N+ NN+ V + YTS K
Sbjct: 499 MVVNAIVFENSKVNSPHVRKNVVN--QLNMVNNNLAVRVARGLGLDEPSPNPTYYTSNKT 556
Query: 80 PNRGTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLEPEGLQM 139
N GTF S + G Q+GF+ + + ++ Q MAA F+ + LN+ E
Sbjct: 557 SNVGTFGKPLLSIE----GLQVGFLASNSHPESIKQGQAMAAQFSAAGVDLNIVTEAYAD 612
Query: 140 G 140
G
Sbjct: 613 G 613
>YKS7_YEAST (P34231) Hypothetical 81.0 kDa protein in PXA2-MTR2
intergenic region
Length = 750
Score = 32.3 bits (72), Expect = 0.65
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 5 EHETPPSNRTNLASCLVATVFLIFILIIIFTLYFTLFKPQDP 46
EH+ P+ R+ LA L+A +F F +I I LYF + + P
Sbjct: 535 EHQYVPAVRSVLALNLLAIIFSFFTMIFIILLYFNRYMFKQP 576
>PTRA_RAT (Q03348) Protein-tyrosine phosphatase alpha precursor (EC
3.1.3.48) (R-PTP-alpha)
Length = 796
Score = 32.0 bits (71), Expect = 0.85
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 9 PPSNRTNLASCLVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNST 65
PP++ T + + +VA L+ IL II LY FK K SF L+N T
Sbjct: 139 PPADETPIIAVMVALSSLLVILFIIIVLYMLRFK----KYKQAGSHSNSFRLSNGRT 191
>DNLI_THEFM (Q9HH07) DNA ligase (EC 6.5.1.1)
(Polydeoxyribonucleotide synthase [ATP])
Length = 559
Score = 32.0 bits (71), Expect = 0.85
Identities = 23/72 (31%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
Query: 83 GTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLEPEG--LQMG 140
G +H SF + +Y + G FVP GK+ + T A FT PL + EG +++
Sbjct: 440 GRRAHLLGSFLVAAYDQHRG-EFVPVGKVGSGFTDEDLAEFTKMLKPLIVREEGKYVEIE 498
Query: 141 PTVEIESTIEMV 152
P V I+ T + +
Sbjct: 499 PRVVIQVTYQEI 510
>YF03_PASMU (Q9CKV2) Hypothetical protein PM1503
Length = 289
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 5/71 (7%)
Query: 44 QDPKISVTAVQLPSFNLTNNSTTVNFTFSQYTSVKNPNRGTFSHYDSSFQLLSYGKQI-- 101
+DP A L L N T +N+ Q ++ PNR T D S + GK I
Sbjct: 212 EDPGTGSAAANLGGLCLKNGLTPLNWRIYQGDEIQRPNRLTL-QVDESETIYVGGKVIAV 270
Query: 102 --GFMFVPAGK 110
G +FVP+G+
Sbjct: 271 GCGELFVPSGE 281
>PTRA_MOUSE (P18052) Protein-tyrosine phosphatase alpha precursor
(EC 3.1.3.48) (R-PTP-alpha) (LCA-related phosphatase)
(PTPTY-28)
Length = 829
Score = 30.8 bits (68), Expect = 1.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 9 PPSNRTNLASCLVATVFLIFILIIIFTLYFTLFKPQDPKISVTAVQLPSFNLTNNST 65
PP++ T + + +VA L+ I+ II LY FK K SF L+N T
Sbjct: 136 PPADETPIIAVMVALSSLLVIVFIIIVLYMLRFK----KYKQAGSHSNSFRLSNGRT 188
>OTCC_STAAW (Q8NUK8) Ornithine carbamoyltransferase, catabolic (EC
2.1.3.3) (OTCase)
Length = 336
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/63 (34%), Positives = 33/63 (51%), Gaps = 12/63 (19%)
Query: 98 GKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLEPEGL-----QMGPTVEIESTIEMV 152
GK I +F + N+ RT+ A FTV S+ L PE L Q+G +E T +++
Sbjct: 51 GKNIALLF----EKNSTRTR---AAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVL 103
Query: 153 GRV 155
GR+
Sbjct: 104 GRM 106
>OTCC_STAAN (P65602) Ornithine carbamoyltransferase, catabolic (EC
2.1.3.3) (OTCase)
Length = 336
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/63 (34%), Positives = 33/63 (51%), Gaps = 12/63 (19%)
Query: 98 GKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLEPEGL-----QMGPTVEIESTIEMV 152
GK I +F + N+ RT+ A FTV S+ L PE L Q+G +E T +++
Sbjct: 51 GKNIALLF----EKNSTRTR---AAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVL 103
Query: 153 GRV 155
GR+
Sbjct: 104 GRM 106
>OTCC_STAAM (P65601) Ornithine carbamoyltransferase, catabolic (EC
2.1.3.3) (OTCase)
Length = 336
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/63 (34%), Positives = 33/63 (51%), Gaps = 12/63 (19%)
Query: 98 GKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLEPEGL-----QMGPTVEIESTIEMV 152
GK I +F + N+ RT+ A FTV S+ L PE L Q+G +E T +++
Sbjct: 51 GKNIALLF----EKNSTRTR---AAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVL 103
Query: 153 GRV 155
GR+
Sbjct: 104 GRM 106
>SSN6_YEAST (P14922) Glucose repression mediator protein
Length = 966
Score = 30.0 bits (66), Expect = 3.2
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 45 DPKISVTAVQLPSFN---LTNNSTTVNFTFSQYTSVKNP-----NRGTFSHYDSSFQLLS 96
+P++ + P+ N L N +T++ S ++P N S + + S
Sbjct: 731 EPQVKKQKLNSPNSNINKLVNTATSIEENAKSEVSNQSPAVVESNTNNTSQEEKPVKANS 790
Query: 97 YGKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLEPEGLQMGPTVEIEST 148
IG P A AA+ + + PLN EPE + PTV ES+
Sbjct: 791 IPSVIGAQEPPQEASPAEEAT-KAASVSPSTKPLNTEPESSSVQPTVSSESS 841
>PTRA_HUMAN (P18433) Protein-tyrosine phosphatase alpha precursor
(EC 3.1.3.48) (R-PTP-alpha)
Length = 802
Score = 29.6 bits (65), Expect = 4.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 9 PPSNRTNLASCLVATVFLIFILIIIFTLYFTLFK 42
PPS+ T + + +VA L+ I+ II LY FK
Sbjct: 136 PPSDETPIIAVMVALSSLLVIVFIIIVLYMLRFK 169
>MY15_MOUSE (Q9QZZ4) Myosin XV (Unconventional myosin-15)
Length = 3511
Score = 29.6 bits (65), Expect = 4.2
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 84 TFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFMAATFTVQSLP--LNLEPEGLQMGP 141
T DS F++L+ +G ++ + +A+ + + +Q++ L + PEGLQ
Sbjct: 1452 TSEDQDSIFRILASILHLGNVYFEKHETDAQEVASVVSAREIQAVAELLQVSPEGLQKAI 1511
Query: 142 TVEIESTIEMVGRVRVLHLFSHHVEAKADCRVAIA 176
T ++ TI R ++ + VE+ D R AIA
Sbjct: 1512 TFKVTETI----REKIFTPLT--VESAVDARDAIA 1540
>GTR3_MOUSE (P32037) Solute carrier family 2, facilitated glucose
transporter, member 3 (Glucose transporter type 3,
brain)
Length = 493
Score = 29.3 bits (64), Expect = 5.5
Identities = 15/31 (48%), Positives = 19/31 (60%)
Query: 17 ASCLVATVFLIFILIIIFTLYFTLFKPQDPK 47
A+ L A VF+IF +IF L FT FK + K
Sbjct: 424 AAYLGAYVFIIFAAFLIFFLIFTFFKVPETK 454
>ILAP_RAT (Q63621) Interleukin-1 receptor accessory protein
precursor (IL-1 receptor accessory protein) (IL-1RAcP)
Length = 570
Score = 28.9 bits (63), Expect = 7.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 9 PPSNRTNLASCLVATVFLIFILIIIFTLYF 38
PP LA ATVFL+ +LI+++ +Y+
Sbjct: 353 PPRYTVELACGFGATVFLVVVLIVVYHVYW 382
>ILAP_MOUSE (Q61730) Interleukin-1 receptor accessory protein
precursor (IL-1 receptor accessory protein) (IL-1RAcP)
Length = 570
Score = 28.9 bits (63), Expect = 7.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 9 PPSNRTNLASCLVATVFLIFILIIIFTLYF 38
PP LA ATVFL+ +LI+++ +Y+
Sbjct: 353 PPRYTVELACGFGATVFLVVVLIVVYHVYW 382
>YQ19_VIBPA (Q87LJ3) Hypothetical UPF0235 protein VP2619
Length = 96
Score = 28.5 bits (62), Expect = 9.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 109 GKINARRTQFMAATFTVQSLPLNLEPEGLQMGPTVEIESTIEMVGRVRVL 158
GK NA T+F+A F + +++E L + IES +++ V+ +
Sbjct: 46 GKANAHLTKFLAKQFKIAKGLVHIEKGELGRHKQIRIESPVQIPAEVKAI 95
>OTC2_STAEP (Q8CMW2) Ornithine carbamoyltransferase 2, catabolic (EC
2.1.3.3) (OTCase 2)
Length = 335
Score = 28.5 bits (62), Expect = 9.4
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 98 GKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLEPEGL-----QMGPTVEIESTIEMV 152
GK I +F + + RT+ A FTV S+ L PE L Q+G +E T +++
Sbjct: 51 GKNIALLF----EKTSTRTR---AAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVL 103
Query: 153 GRV 155
GR+
Sbjct: 104 GRM 106
>LMG1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2
chain)
Length = 1609
Score = 28.5 bits (62), Expect = 9.4
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 93 QLLSYGKQIGFMFVPAGKINARRTQFMAATFTVQSLPLNLEPEGLQMGPTVEIESTIEMV 152
Q+LSYG+ + F F +++ R T+ A ++ L + + G + E+T++ V
Sbjct: 569 QVLSYGQNLSFSF----RVDRRDTRLSAEDLVLEGAGLRVSVPLIAQGNSYPSETTVKYV 624
Query: 153 GRV 155
R+
Sbjct: 625 FRL 627
>GTR3_DROME (P53403) Glucose transporter type 3 (Glucose
transporter-like protein) (Glut-1)
Length = 507
Score = 28.5 bits (62), Expect = 9.4
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Query: 24 VFLIFILIIIFTLYFTL-FKPQDPKISVTAVQLPSFNLTNNSTTVNFTFSQYTS 76
+FL+F +I L F+L + P+ K+S +Q L N + FT S +S
Sbjct: 452 LFLLFAIIASLILLFSLIYIPETKKLSSAKIQQRLGGLINRPAVITFTSSSDSS 505
>FIBP_ADEP3 (Q83457) Fiber protein
Length = 448
Score = 28.5 bits (62), Expect = 9.4
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 60 LTNNSTTVNFTFSQYTSVKNPNRGTFSHYDSSFQLLSYGKQIGFMFVPAGKINARRTQFM 119
LTN +T F T V G+F+ SS L S K++ F+F AG++ + T
Sbjct: 274 LTNTTTPNGTFFLCLTRVGGLVLGSFA-LKSSIDLTSMTKKVNFIFDGAGRLQSDST--Y 330
Query: 120 AATFTVQSLPLNLEPEGLQMGPTVEIEST 148
F +S +EP + P + ST
Sbjct: 331 KGRFGFRSNDSVIEPTAAGLSPAWLMPST 359
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,062,158
Number of Sequences: 164201
Number of extensions: 725335
Number of successful extensions: 2567
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2559
Number of HSP's gapped (non-prelim): 20
length of query: 187
length of database: 59,974,054
effective HSP length: 104
effective length of query: 83
effective length of database: 42,897,150
effective search space: 3560463450
effective search space used: 3560463450
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC142526.4