Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142222.6 - phase: 0 
         (123 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DCLY_SALTY (Q60002) Lysine decarboxylase, inducible (EC 4.1.1.18...    33  0.11
PDS5_YEAST (Q04264) Sister chromatid cohesion protein PDS5 (Prec...    32  0.25
MRS2_YEAST (Q01926) RNA splicing protein MRS2, mitochondrial pre...    31  0.43
DNLJ_BACSU (O31498) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleo...    31  0.43
NOL1_HUMAN (P46087) Proliferating-cell nucleolar antigen p120 (P...    31  0.56
A2MG_MOUSE (Q61838) Alpha-2-macroglobulin precursor (Alpha-2-M)        29  1.6
ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (X-linked hel...    29  2.1
ATRX_HUMAN (P46100) Transcriptional regulator ATRX (X-linked hel...    29  2.1
REPM_STAAU (P14490) Replication initiation protein                     28  3.6
MURF_SYNY3 (P45450) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-...    28  4.7
SPE2_THECC (O81160) Arginine decarboxylase (EC 4.1.1.19) (ARGDC)...    27  6.2
SLIB_RAT (P09916) Somatoliberin precursor (Growth hormone-releas...    27  6.2
CH60_CHLMU (Q59322) 60 kDa chaperonin (Protein Cpn60) (groEL pro...    27  6.2
BST1_HUMAN (Q10588) ADP-ribosyl cyclase 2 precursor (EC 3.2.2.5)...    27  6.2
ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (X-linked hel...    27  6.2
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li...    27  6.2
YKH7_YEAST (P36081) Hypothetical 46.0 kDa protein in SMY1-MUD2 i...    27  8.1
DNM1_CHICK (Q92072) DNA (cytosine-5)-methyltransferase 1 (EC 2.1...    27  8.1
CYAA_DICDI (Q03100) Adenylate cyclase, aggregation specific (EC ...    27  8.1

>DCLY_SALTY (Q60002) Lysine decarboxylase, inducible (EC 4.1.1.18)
           (LDC)
          Length = 714

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 28  ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
           I+A     A  +KG A  K+L++    +A+    ++K+ K + D    D VWQ E + G 
Sbjct: 405 IVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462

Query: 88  KCEPLDFSGVIH 99
           +C PL      H
Sbjct: 463 ECWPLRSDSAWH 474


>PDS5_YEAST (Q04264) Sister chromatid cohesion protein PDS5
            (Precocious dissociation of sisters protein 5)
          Length = 1277

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 24/73 (32%), Positives = 38/73 (51%), Gaps = 7/73 (9%)

Query: 5    TSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMK 64
            T  PESL+ K Q+N      I  IL     Q +RL+     K+LL++ +N++  +  K+ 
Sbjct: 1162 TYIPESLTEKIQNNIK--AKIGRILHTSQTQRQRLQ-----KRLLAHENNESQKKKKKVH 1214

Query: 65   KTKKQRDNELNDG 77
              + Q D+E  DG
Sbjct: 1215 HARSQADDEEGDG 1227


>MRS2_YEAST (Q01926) RNA splicing protein MRS2, mitochondrial
           precursor
          Length = 470

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 25/87 (28%), Positives = 44/87 (49%), Gaps = 16/87 (18%)

Query: 10  SLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLL------------SNMSNKAL 57
           ++ P   +NSS +   SA +A+ ++  RR K    TK+ L            +N+SN  +
Sbjct: 376 TMYPNSPANSSVYPKTSASIALTNKLKRRRKWWKSTKQRLGVLLYGSSYTNKANLSNNKI 435

Query: 58  SQ-FGKMKKTKKQRD--NELN-DGVWQ 80
           ++ F K+KK   + D  N+ N D +W+
Sbjct: 436 NKGFSKVKKFNMENDIKNKQNRDMIWK 462


>DNLJ_BACSU (O31498) DNA ligase (EC 6.5.1.2)
           (Polydeoxyribonucleotide synthase [NAD+])
          Length = 668

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 25/78 (32%), Positives = 39/78 (49%), Gaps = 5/78 (6%)

Query: 14  KRQSNSSFF----ITISAILAMLSRQARRLKGKAKTKKLLSNMS-NKALSQFGKMKKTKK 68
           K + + S+F    I ++  L  LSR   + + +A   KL  ++S N  L   G+   +K 
Sbjct: 587 KAEDSDSYFAGKTIVLTGKLEELSRNEAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKL 646

Query: 69  QRDNELNDGVWQKEILMG 86
            +  ELN  VW +E LMG
Sbjct: 647 TKAQELNIEVWNEEQLMG 664


>NOL1_HUMAN (P46087) Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120)
          Length = 855

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 15/43 (34%), Positives = 24/43 (54%)

Query: 33  SRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELN 75
           S+ A++ KG AKTK+ L    +   + F K+    K  D+EL+
Sbjct: 620 SQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELS 662


>A2MG_MOUSE (Q61838) Alpha-2-macroglobulin precursor (Alpha-2-M)
          Length = 1495

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 1    MANLTSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQF 60
            +A LTS  ES  P R  +SS   T S I+  +S+Q     G   T+  +  ++ +ALS++
Sbjct: 1227 LAYLTS--ESSRPTRDLSSSDLSTASKIVKWISKQQNSDGGLLLTQDTV--VALQALSKY 1282

Query: 61   GKMKKTKKQRD 71
            G    T+ Q++
Sbjct: 1283 GSATFTRSQKE 1293


>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (X-linked helicase
            II) (X-linked nuclear protein) (XNP)
          Length = 2492

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 34   RQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKE 82
            R+ R L  K  TK++ S  S+    +  +  K KKQR +     V  KE
Sbjct: 1135 RERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKE 1183


>ATRX_HUMAN (P46100) Transcriptional regulator ATRX (X-linked helicase
            II) (X-linked nuclear protein) (XNP) (Znf-HX)
          Length = 2492

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 34   RQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKE 82
            R+ R L  K  TK++ S  S+    +  +  K KKQR +     V  KE
Sbjct: 1135 RERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKE 1183


>REPM_STAAU (P14490) Replication initiation protein
          Length = 314

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 41  GKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELN-DGVWQKEI 83
           GKA+TK   S  SN+ +  + K K+ K+  D +++ + +W+ EI
Sbjct: 172 GKAETKYFGSRDSNRFIRIYNKKKERKENADVDVSAEHLWRVEI 215


>MURF_SYNY3 (P45450)
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (EC 6.3.2.10) (UDP-MurNAc-pentapeptide
           synthetase) (D-alanyl-D-alanine-adding enzyme)
          Length = 454

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)

Query: 41  GKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNEL 74
           GK  TK+L++ +    LSQFG + KT+   +NE+
Sbjct: 119 GKTTTKELIAAV----LSQFGNVHKTRANYNNEI 148


>SPE2_THECC (O81160) Arginine decarboxylase (EC 4.1.1.19) (ARGDC)
           (ADC) (Fragment)
          Length = 406

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 74  LNDGV------WQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSP 115
           L+DGV      + + + +G + + +DF G +  D NG ++G+  L  P
Sbjct: 168 LSDGVGEAAQIYSELVRLGARMKVVDFGGGLGIDYNGSKSGDSDLSVP 215


>SLIB_RAT (P09916) Somatoliberin precursor (Growth
          hormone-releasing factor) (GRF) (Growth
          hormone-releasing hormone) (GHRH)
          Length = 104

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 30 AMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKE 82
          A+ +   RR+ G+   +KLL  + N+   Q G+  + ++ R N   D VW ++
Sbjct: 34 AIFTSSYRRILGQLYARKLLHEIMNR---QQGERNQEQRSRFNRHLDRVWAED 83


>CH60_CHLMU (Q59322) 60 kDa chaperonin (Protein Cpn60) (groEL
           protein) (Heat shock protein 60) (HSP60)
          Length = 543

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 19/64 (29%), Positives = 33/64 (50%), Gaps = 2/64 (3%)

Query: 30  AMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKT-KKQRDNELNDGVWQKEILMGGK 88
           AML   A    G+  +++L   + N +L+  GK KK    + D  + +G+ +KE L   +
Sbjct: 286 AMLEDIAILTGGQLISEELGMKLENASLAMLGKAKKVIVSKEDTTIVEGMGEKEAL-DAR 344

Query: 89  CEPL 92
           CE +
Sbjct: 345 CESI 348


>BST1_HUMAN (Q10588) ADP-ribosyl cyclase 2 precursor (EC 3.2.2.5)
           (Cyclic ADP-ribose hydrolase 2) (cADPr hydrolase 2)
           (Bone marrow stromal antigen 1) (BST-1) (CD157 antigen)
          Length = 318

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 16/49 (32%), Positives = 25/49 (50%), Gaps = 5/49 (10%)

Query: 66  TKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQ-TGEVPLR 113
           T +  +N   D  W++  +   K    D SGVIH  +NG + TG  P++
Sbjct: 159 TSEDCENNPVDSFWKRASIQYSK----DSSGVIHVMLNGSEPTGAYPIK 203


>ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (X-linked helicase
            II) (X-linked nuclear protein) (XNP)
          Length = 2492

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 34   RQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKE 82
            R+ R L  K  TK++ S  S+    +  +  K K+QR +     V  KE
Sbjct: 1135 RERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKQQRTSSKKKAVIVKE 1183


>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
           (X-linked nuclear protein-1)
          Length = 1359

 Score = 27.3 bits (59), Expect = 6.2
 Identities = 13/41 (31%), Positives = 24/41 (57%)

Query: 34  RQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNEL 74
           R+ +  K   KTKK  S+ S++   +  K+KK+KK ++  +
Sbjct: 136 REQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSV 176


>YKH7_YEAST (P36081) Hypothetical 46.0 kDa protein in SMY1-MUD2
           intergenic region
          Length = 392

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 37  RRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQ 69
           RR+ GK    K   NM N   ++    KKT KQ
Sbjct: 359 RRVLGKFSEMKKFKNMKNHKYTELPSYKKTSKQ 391


>DNM1_CHICK (Q92072) DNA (cytosine-5)-methyltransferase 1 (EC
           2.1.1.37) (Dnmt1) (DNA methyltransferase GgaI) (DNA
           MTase GgaI) (MCMT) (M.GgaI)
          Length = 1537

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)

Query: 6   SSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKM-- 63
           SS  S S    S+SS   + S + A  +R+ARR +   ++KK  S  S++     G+   
Sbjct: 129 SSSSSSSSSSSSSSSSSSSSSLLPAPRARKARRSRSNGESKK--SPASSRVTRSSGRQPT 186

Query: 64  ------KKTKKQRDNELNDGV 78
                 K + K++  E+N  V
Sbjct: 187 ILSVFSKGSTKRKSEEVNGAV 207


>CYAA_DICDI (Q03100) Adenylate cyclase, aggregation specific (EC
           4.6.1.1) (ATP pyrophosphate-lyase) (Adenylyl cyclase)
          Length = 1407

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 3   NLTSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQ--- 59
           N  ++ E    K +SNSSF I +S I    SR   R+ G     K+ ++  +K + Q   
Sbjct: 868 NNNNNEEDFKIKSKSNSSFEIEMSNIKKPKSRFIDRVMGILHHVKISNDKIDKEIIQIDE 927

Query: 60  -FGKMKKTKK 68
            F K+ K +K
Sbjct: 928 DFVKVTKLRK 937


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,270,261
Number of Sequences: 164201
Number of extensions: 476617
Number of successful extensions: 1362
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1355
Number of HSP's gapped (non-prelim): 19
length of query: 123
length of database: 59,974,054
effective HSP length: 99
effective length of query: 24
effective length of database: 43,718,155
effective search space: 1049235720
effective search space used: 1049235720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)


Medicago: description of AC142222.6