BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142143.6 - phase: 0 /pseudo
(175 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YCF1_TOBAC (P12222) Hypothetical 226 kDa protein ycf1 (ORF 1901) 32 0.74
DPOM_NEUIN (P33538) Probable DNA polymerase (EC 2.7.7.7) 32 0.74
PLSX_CHLCV (Q821X8) Fatty acid/phospholipid synthesis protein plsX 32 0.97
CIQ1_XENLA (P70057) Potassium voltage-gated channel subfamily KQ... 30 2.2
CIQ1_RAT (Q9Z0N7) Potassium voltage-gated channel subfamily KQT ... 30 2.2
CIQ1_MOUSE (P97414) Potassium voltage-gated channel subfamily KQ... 30 2.2
CIQ1_HUMAN (P51787) Potassium voltage-gated channel subfamily KQ... 30 2.2
CIQ1_FELCA (O97531) Potassium voltage-gated channel subfamily KQ... 30 2.2
CIQ1_SQUAC (O73925) Potassium voltage-gated channel subfamily KQ... 29 4.8
EFG_CANBF (Q7VRN9) Elongation factor G (EF-G) 29 6.3
MATK_ELEIN (Q9TIB6) Maturase K (Intron maturase) 28 8.2
F38A_HUMAN (Q92508) Protein FAM38A 28 8.2
EFG_COXBU (Q83ES7) Elongation factor G (EF-G) 28 8.2
>YCF1_TOBAC (P12222) Hypothetical 226 kDa protein ycf1 (ORF 1901)
Length = 1901
Score = 32.0 bits (71), Expect = 0.74
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 17/85 (20%)
Query: 14 LPIGGDLSRLMFWEPVLDRIKKRLSRCSK--FLS---FGGRMVLFKFVLSFIHVYALSFF 68
LP G R F+EP+ ++K++ + K F++ F G++ LF+ +
Sbjct: 958 LPFGSPRKRPSFFEPIFKELEKKIGKFKKKYFITLKVFKGKIKLFRRISK---------- 1007
Query: 69 KVPSGIISSMKSIFIKKKKKKLGCV 93
+ +I S S+FIKK KK+L V
Sbjct: 1008 ETKKWLIKS--SLFIKKMKKELSKV 1030
>DPOM_NEUIN (P33538) Probable DNA polymerase (EC 2.7.7.7)
Length = 969
Score = 32.0 bits (71), Expect = 0.74
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 8/61 (13%)
Query: 27 EPVLDRIKKRLSRCSKFLSFGGRMVLFK--------FVLSFIHVYALSFFKVPSGIISSM 78
E ++ IK +L K FGG L+K + ++ ++ +A+ +FK+PSGI +
Sbjct: 597 EDMIPNIKSKLHNIIKLSYFGGICELYKPFGVNIKSYDVNSLYPFAMKYFKMPSGIPKYV 656
Query: 79 K 79
K
Sbjct: 657 K 657
>PLSX_CHLCV (Q821X8) Fatty acid/phospholipid synthesis protein
plsX
Length = 316
Score = 31.6 bits (70), Expect = 0.97
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 16 IGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIH 61
+GGD S L+ WE ++D + R S F++F R V + + S+ H
Sbjct: 10 MGGDHSPLVIWEVLIDVLNSRASNSHISFIAFASREVKEQILSSYTH 56
>CIQ1_XENLA (P70057) Potassium voltage-gated channel subfamily KQT
member 1 (Voltage-gated potassium channel subunit Kv7.1)
(IKs producing slow voltage-gated potassium channel
alpha subunit xKvLQT1) (KQT-like 1) (Fragment)
Length = 377
Score = 30.4 bits (67), Expect = 2.2
Identities = 12/36 (33%), Positives = 26/36 (71%)
Query: 54 KFVLSFIHVYALSFFKVPSGIISSMKSIFIKKKKKK 89
K + S V+A+SFF +P+GI+ S ++ +++K+++
Sbjct: 292 KTIASCFSVFAISFFALPAGILGSGFALKVQQKQRQ 327
>CIQ1_RAT (Q9Z0N7) Potassium voltage-gated channel subfamily KQT
member 1 (Voltage-gated potassium channel subunit Kv7.1)
(IKs producing slow voltage-gated potassium channel
alpha subunit KvLQT1) (KQT-like 1)
Length = 669
Score = 30.4 bits (67), Expect = 2.2
Identities = 12/36 (33%), Positives = 26/36 (71%)
Query: 54 KFVLSFIHVYALSFFKVPSGIISSMKSIFIKKKKKK 89
K + S V+A+SFF +P+GI+ S ++ +++K+++
Sbjct: 326 KTIASCFSVFAISFFALPAGILGSGFALKVQQKQRQ 361
>CIQ1_MOUSE (P97414) Potassium voltage-gated channel subfamily KQT
member 1 (Voltage-gated potassium channel subunit Kv7.1)
(IKs producing slow voltage-gated potassium channel
alpha subunit KvLQT1) (KQT-like 1)
Length = 668
Score = 30.4 bits (67), Expect = 2.2
Identities = 12/36 (33%), Positives = 26/36 (71%)
Query: 54 KFVLSFIHVYALSFFKVPSGIISSMKSIFIKKKKKK 89
K + S V+A+SFF +P+GI+ S ++ +++K+++
Sbjct: 325 KTIASCFSVFAISFFALPAGILGSGFALKVQQKQRQ 360
>CIQ1_HUMAN (P51787) Potassium voltage-gated channel subfamily KQT
member 1 (Voltage-gated potassium channel subunit Kv7.1)
(IKs producing slow voltage-gated potassium channel
alpha subunit KvLQT1) (KQT-like 1)
Length = 676
Score = 30.4 bits (67), Expect = 2.2
Identities = 12/36 (33%), Positives = 26/36 (71%)
Query: 54 KFVLSFIHVYALSFFKVPSGIISSMKSIFIKKKKKK 89
K + S V+A+SFF +P+GI+ S ++ +++K+++
Sbjct: 326 KTIASCFSVFAISFFALPAGILGSGFALKVQQKQRQ 361
>CIQ1_FELCA (O97531) Potassium voltage-gated channel subfamily KQT
member 1 (Voltage-gated potassium channel subunit Kv7.1)
(IKs producing slow voltage-gated potassium channel
alpha subunit KvLQT1) (KQT-like 1) (Fragment)
Length = 172
Score = 30.4 bits (67), Expect = 2.2
Identities = 12/36 (33%), Positives = 26/36 (71%)
Query: 54 KFVLSFIHVYALSFFKVPSGIISSMKSIFIKKKKKK 89
K + S V+A+SFF +P+GI+ S ++ +++K+++
Sbjct: 134 KTIASCFSVFAISFFALPAGILGSGFALKVQQKQRQ 169
>CIQ1_SQUAC (O73925) Potassium voltage-gated channel subfamily KQT
member 1 (Voltage-gated potassium channel subunit Kv7.1)
(IKs producing slow voltage-gated potassium channel
alpha subunit KvLQT1) (KQT-like 1)
Length = 660
Score = 29.3 bits (64), Expect = 4.8
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 56 VLSFIHVYALSFFKVPSGIISSMKSIFIKKKKKK 89
+ S V+A+SFF +P+GI+ S ++ +++K+++
Sbjct: 321 IASCFSVFAISFFALPAGILGSGFALKVQQKQRQ 354
>EFG_CANBF (Q7VRN9) Elongation factor G (EF-G)
Length = 709
Score = 28.9 bits (63), Expect = 6.3
Identities = 13/29 (44%), Positives = 23/29 (78%), Gaps = 2/29 (6%)
Query: 65 LSFFKVPSGIISSMKSIF--IKKKKKKLG 91
L+FF+V SG+++S SIF +K+K+++ G
Sbjct: 335 LTFFRVYSGVVNSGDSIFNSVKEKRERFG 363
>MATK_ELEIN (Q9TIB6) Maturase K (Intron maturase)
Length = 513
Score = 28.5 bits (62), Expect = 8.2
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 63 YALSFFKVPSGIISSMKSIFIKKKKKK 89
+ L+++ + + +I+SMKS+F+ KK+ K
Sbjct: 183 FFLNYYSIWNSLITSMKSVFLLKKENK 209
>F38A_HUMAN (Q92508) Protein FAM38A
Length = 2035
Score = 28.5 bits (62), Expect = 8.2
Identities = 11/27 (40%), Positives = 19/27 (69%)
Query: 44 LSFGGRMVLFKFVLSFIHVYALSFFKV 70
+SF GR+V++K V F+ + L+ F+V
Sbjct: 106 VSFAGRLVVYKIVYMFLFLLCLTLFQV 132
>EFG_COXBU (Q83ES7) Elongation factor G (EF-G)
Length = 699
Score = 28.5 bits (62), Expect = 8.2
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 62 VYALSFFKVPSGIISSMKSIF--IKKKKKKLG 91
V L+FF+V SGI+ S S++ IK KK+++G
Sbjct: 330 VGTLTFFRVYSGILKSGDSVYNPIKGKKERIG 361
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.357 0.167 0.590
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,878,790
Number of Sequences: 164201
Number of extensions: 545365
Number of successful extensions: 2718
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2704
Number of HSP's gapped (non-prelim): 17
length of query: 175
length of database: 59,974,054
effective HSP length: 103
effective length of query: 72
effective length of database: 43,061,351
effective search space: 3100417272
effective search space used: 3100417272
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC142143.6