BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142096.6 - phase: 0 /pseudo
(930 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 41 0.017
NMD2_YEAST (P38798) Nonsense-mediated mRNA decay protein 2 (Up-f... 40 0.022
HT31_ARATH (Q04996) Homeobox protein HAT3.1 40 0.022
SU6H_HUMAN (Q7KZ85) Suppressor of Ty 6 homolog protein (Chromati... 40 0.029
UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream b... 39 0.049
K21A_HUMAN (Q7Z4S6) Kinesin family member 21A (Kinesin-like prot... 39 0.049
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li... 39 0.049
YU0O_CAEEL (Q19753) Hypothetical protein F23B12.7 in chromosome V 39 0.064
SET_RAT (Q63945) SET protein (Phosphatase 2A inhibitor I2PP2A) (... 39 0.064
SET_MOUSE (Q9EQU5) SET protein (Phosphatase 2A inhibitor I2PP2A)... 39 0.064
SET_HUMAN (Q01105) SET protein (Phosphatase 2A inhibitor I2PP2A)... 39 0.064
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 39 0.064
K21A_MOUSE (Q9QXL2) Kinesin family member 21A 38 0.11
SN24_HUMAN (P51532) Possible global transcription activator SNF2... 38 0.14
YBE6_YEAST (P38193) Hypothetical 50.7 kDa protein in SEC17-QCR1 ... 37 0.19
SAS3_YEAST (P34218) SAS3 protein 37 0.19
MP62_LYTPI (P91753) Mitotic apparatus protein p62 37 0.24
IFH1_YEAST (P39520) IFH1 protein (RRP3 protein) 37 0.24
CE29_BOVIN (Q9TU23) Centrosomal protein Cep290 37 0.24
NOG2_CRYBA (Q6TGJ8) Nucleolar GTP-binding protein 2 37 0.32
>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog
Length = 713
Score = 40.8 bits (94), Expect = 0.017
Identities = 46/202 (22%), Positives = 84/202 (40%), Gaps = 13/202 (6%)
Query: 2 AKSSKRSIANGTNTSNKSTSKKKKNNKMGPEAVAM-KAKAQKTNTNPFESIWSRRKFEVM 60
A+ +K T + K + K+ K E A KAKA+K E K
Sbjct: 523 AEKAKVEATEKTKKAAKEAADKEAELKKAAEKAAEEKAKAEKKAAEAREKEEKEAKAAAK 582
Query: 61 GQKRKGDTKRMGLARSLAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLD-DFGKAIL 119
++ + + + A + A E++K T E ++ +R E D + KA
Sbjct: 583 AKEEELKKEEVAKAAAKAEEEQKATAAAEAAKAEA------KRAAEADASKKVEAEKAAA 636
Query: 120 RSQRERQLNVKSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGS 179
+E + + SK + L E DE G ++ ++E +D+D+ +E ++EG
Sbjct: 637 EESKESKAESEESKVER-DLEELKIDEENG----NAEEADEEADDDDEDDEEEGDSKEGE 691
Query: 180 DERSYCKKQVLQG*KSKRKGKR 201
+ +S + K+K+KGK+
Sbjct: 692 ETKSTTASKSKSKKKNKKKGKK 713
>NMD2_YEAST (P38798) Nonsense-mediated mRNA decay protein 2
(Up-frameshift suppressor 2)
Length = 1089
Score = 40.4 bits (93), Expect = 0.022
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 48 FESIWSRRKFEVMGQKRKGDTKRMGLARSLAVEKRKKTLLKEYEQST---KSSEFIDRRI 104
+E+I+ KFE + ++ L +SL K K +K S K S I
Sbjct: 782 YENIFGNTKFERSENLVESASRLESLLKSLNAIKSKDDRVKGSSASIHNGKESAVPIESI 841
Query: 105 GENDEGLDDF---GKAILRSQRERQLNVKSSK------KSKYHLSEEDDDEFEGIDGLGR 155
E+DE DD G +L + +++ +++ ++K SE++DDE + D
Sbjct: 842 TEDDEDEDDENDDGVDLLGEDEDAEISTPNTESAPGKHQAKQDESEDEDDEDDDEDDDDD 901
Query: 156 DDFEDEMLGEDDDETDET*NQEGSDE 181
DD +D+ E D++ DE + E D+
Sbjct: 902 DDDDDDDGEEGDEDDDEDDDDEDDDD 927
>HT31_ARATH (Q04996) Homeobox protein HAT3.1
Length = 661
Score = 40.4 bits (93), Expect = 0.022
Identities = 30/110 (27%), Positives = 54/110 (48%), Gaps = 11/110 (10%)
Query: 95 KSSEFIDRRIGENDEGLDDFGKAILRSQRERQLNVKSSKKSKYH---LSEEDDDEFEGID 151
++S+ I E+D GLDD + R + +L+ K +Y S DDD+++
Sbjct: 429 QTSQLQGDAILESDVGLDDGPAGVSRRRNVERLDYKKLYDEEYDNVPTSSSDDDDWDKTA 488
Query: 152 GLGRDDFEDEMLGEDDDETDET*NQEGSDERSYCKKQVLQG*KSKRKGKR 201
+G++D E E DE D ++ S+ + K++++ KSKR K+
Sbjct: 489 RMGKEDSESE------DEGDTVPLKQSSNAEDHTSKKLIR--KSKRADKK 530
>SU6H_HUMAN (Q7KZ85) Suppressor of Ty 6 homolog protein (Chromatin
structural protein)
Length = 1726
Score = 40.0 bits (92), Expect = 0.029
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 97 SEFIDRRIGENDEGLDDFGKAILRSQRERQLNVKSSKKSKYHLSEEDDDEFEGIDGLGRD 156
S+F++ E++E +D G+ + R +K + EEDDDE E + L
Sbjct: 2 SDFVESEAEESEEEYNDEGEVVPRV-------------TKKFVEEEDDDEEEEEENLDDQ 48
Query: 157 DFEDEMLG--EDDDETDET*NQEGSD 180
D + + G DDD+ DE EGSD
Sbjct: 49 DEQGNLKGFINDDDDEDEGEEDEGSD 74
>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream
binding factor 1) (UBF-1)
Length = 765
Score = 39.3 bits (90), Expect = 0.049
Identities = 28/105 (26%), Positives = 44/105 (41%)
Query: 79 VEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRERQLNVKSSKKSKYH 138
+ ++K + K + KSS + E++E D+ + + E + +
Sbjct: 649 ISNKRKNMTKLRGPNPKSSRTTLQSKSESEEDDDEEEEDDEEEEEEEEDDENGDSSEDGG 708
Query: 139 LSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDERS 183
S E E E DG DD +D+ EDDD+ DE EGS S
Sbjct: 709 DSSESSSEDESEDGDENDDDDDDEDDEDDDDEDEDNESEGSSSSS 753
>K21A_HUMAN (Q7Z4S6) Kinesin family member 21A (Kinesin-like protein
KIF2) (NY-REN-62 antigen)
Length = 1674
Score = 39.3 bits (90), Expect = 0.049
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 67 DTKRMGLARSLAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRERQ 126
D + L + EKRKK L++ E+S + + + D + + + + +
Sbjct: 539 DLAKKDLEKLKRKEKRKKKRLQKLEESNREERSVAGKEDNTDTDQEKKEEKGVSERENNE 598
Query: 127 LNVKSSKKSKYHLSEEDDDEFEGIDGLGRDDFE-DEMLGEDDDETDET*NQEGSDERSYC 185
L V+ S++ H EE+++E E DD + E E D E+DE N + C
Sbjct: 599 LEVEESQEVSDHEDEEEEEEEE------EDDIDGGESSDESDSESDEKANYQADLANITC 652
Query: 186 KKQVLQ 191
+ + Q
Sbjct: 653 EIAIKQ 658
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
(X-linked nuclear protein-1)
Length = 1359
Score = 39.3 bits (90), Expect = 0.049
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 18/198 (9%)
Query: 3 KSSKRSIANGTNTSNKSTS------KKKKNNKMGPEAVAMKAKAQKTNTNPFESIWSRRK 56
KSSK+S + S S KK K+ K + K+K ++T T+ E S +
Sbjct: 77 KSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRT-TSSSEDEDSDEE 135
Query: 57 FEVMGQKRKGDTKRMGLARSLA-------VEKRKKTLLKEYEQSTKSSEFID---RRIGE 106
E +K+ TK+ + S V+K KK K ++ ++SE D + +
Sbjct: 136 REQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKK 195
Query: 107 NDEGLDDFGKAILRSQRERQLNV-KSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGE 165
+ +GL K+ S+ E + V KS KKSK + +E + E E + + +
Sbjct: 196 SKKGLKKKAKSESESESEDEKEVKKSKKKSKKVVKKESESEDEAPEKKKTEKRKRSKTSS 255
Query: 166 DDDETDET*NQEGSDERS 183
++ E ++E ++ S
Sbjct: 256 EESSESEKSDEEEEEKES 273
Score = 35.8 bits (81), Expect = 0.54
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 119 LRSQRERQ----LNVKSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET* 174
L+ +RER+ + +KK K SEEDDD+ E + + + + + E+DE+
Sbjct: 39 LKEKREREGKPPPKKRPAKKRKASSSEEDDDDEE--ESPRKSSKKSRKRAKSESESDES- 95
Query: 175 NQEGSDERSYCKKQVLQG*KSKRKGKR 201
++E ++S KK+V Q K K K KR
Sbjct: 96 DEEEDRKKSKSKKKVDQKKKEKSKKKR 122
>YU0O_CAEEL (Q19753) Hypothetical protein F23B12.7 in chromosome V
Length = 953
Score = 38.9 bits (89), Expect = 0.064
Identities = 41/175 (23%), Positives = 74/175 (41%), Gaps = 24/175 (13%)
Query: 13 TNTSNKSTSKKKKNNKMGPEAVAMKAKAQKTNTNPFESIWSRRKFEVMGQKRKGDTKRMG 72
T T+ +KK ++ G +A+ +N + +R+ E+ +R
Sbjct: 703 TKTTGTRIVRKKAHDPWGVRKLAV-------GSNEYTQ---KRREEIPADERFLHRYTSS 752
Query: 73 LARSLAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRE----RQLN 128
L + V+K EY +S S+EF D+ L+ F L + + ++
Sbjct: 753 LQKEKKVKKENGDDDWEYAESVSSAEF--------DQLLERFEPGELNEEFDIDYSKEFG 804
Query: 129 VKSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLG--EDDDETDET*NQEGSDE 181
+ SK++K EEDD + + D + +D +E G EDDDE D + + D+
Sbjct: 805 AEKSKRNKKKDVEEDDVDMDEDDDIDLNDLNEEEDGGMEDDDEDDGDMDDDDEDD 859
>SET_RAT (Q63945) SET protein (Phosphatase 2A inhibitor I2PP2A)
(I-2PP2A) (Template activating factor I) (TAF-I) (Liver
regeneration related protein LRRGR00002) (Ab1-115)
Length = 289
Score = 38.9 bits (89), Expect = 0.064
Identities = 33/134 (24%), Positives = 57/134 (41%), Gaps = 18/134 (13%)
Query: 53 SRRKFEVMGQKRKGDTKRMGLARSLAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLD 112
S + E+ + K TKR ++ A KR Q + F +D G D
Sbjct: 164 SSKSTEIKWKSGKDLTKRSSQTQNKASRKR---------QHEEPESFFTWFTDHSDAGAD 214
Query: 113 DFGKAILRSQRERQLNV-----KSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDD 167
+ G+ I L ++ + ++DD+E EG++ + + EDE GE+D
Sbjct: 215 ELGEVIKDDIWPNPLQYYLVPDMDDEEGEAEDDDDDDEEEEGLEDIDEEGDEDE--GEED 272
Query: 168 DETDET*NQEGSDE 181
D+ DE +EG ++
Sbjct: 273 DDEDE--GEEGEED 284
>SET_MOUSE (Q9EQU5) SET protein (Phosphatase 2A inhibitor I2PP2A)
(I-2PP2A) (Template activating factor I) (TAF-I)
Length = 289
Score = 38.9 bits (89), Expect = 0.064
Identities = 33/134 (24%), Positives = 57/134 (41%), Gaps = 18/134 (13%)
Query: 53 SRRKFEVMGQKRKGDTKRMGLARSLAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLD 112
S + E+ + K TKR ++ A KR Q + F +D G D
Sbjct: 164 SSKSTEIKWKSGKDLTKRSSQTQNKASRKR---------QHEEPESFFTWFTDHSDAGAD 214
Query: 113 DFGKAILRSQRERQLNV-----KSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDD 167
+ G+ I L ++ + ++DD+E EG++ + + EDE GE+D
Sbjct: 215 ELGEVIKDDIWPNPLQYYLVPDMDDEEGEAEDDDDDDEEEEGLEDIDEEGDEDE--GEED 272
Query: 168 DETDET*NQEGSDE 181
D+ DE +EG ++
Sbjct: 273 DDEDE--GEEGEED 284
>SET_HUMAN (Q01105) SET protein (Phosphatase 2A inhibitor I2PP2A)
(I-2PP2A) (Template activating factor I) (TAF-I) (HLA-DR
associated protein II) (PHAPII) (Inhibitor of granzyme
A-activated DNase) (IGAAD)
Length = 290
Score = 38.9 bits (89), Expect = 0.064
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 53 SRRKFEVMGQKRKGDTKRMGLARSLAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLD 112
S + E+ + K TKR ++ A KR Q + F +D G D
Sbjct: 165 SSKSTEIKWKSGKDLTKRSSQTQNKASRKR---------QHEEPESFFTWFTDHSDAGAD 215
Query: 113 DFGKAILRSQRERQLNV-----KSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDE-MLGED 166
+ G+ I L ++ + ++DD+E EG++ + + EDE ED
Sbjct: 216 ELGEVIKDDIWPNPLQYYLVPDMDDEEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDED 275
Query: 167 DDETDET*NQEGSDE 181
DDE +E EG D+
Sbjct: 276 DDEGEEGEEDEGEDD 290
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 38.9 bits (89), Expect = 0.064
Identities = 22/102 (21%), Positives = 50/102 (48%)
Query: 80 EKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRERQLNVKSSKKSKYHL 139
E+ KK KE ++ +K + + + E++E ++ + + E + + ++ +
Sbjct: 548 EEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDE 607
Query: 140 SEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDE 181
EED+D+ E + +D +D +D+++ DE + E DE
Sbjct: 608 DEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDE 649
Score = 36.2 bits (82), Expect = 0.41
Identities = 23/102 (22%), Positives = 48/102 (46%), Gaps = 5/102 (4%)
Query: 80 EKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRERQLNVKSSKKSKYHL 139
+ KK + K E + + +D+ + +E K + +E Q + + ++ +
Sbjct: 525 DNHKKKMAKIEEAELQKQKHVDKEEDKKEES-----KEVQEESKEVQEDEEEVEEDEEEE 579
Query: 140 SEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDE 181
EE+++E E + ++ E+E ED+DE DE +E D+
Sbjct: 580 EEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDD 621
>K21A_MOUSE (Q9QXL2) Kinesin family member 21A
Length = 1672
Score = 38.1 bits (87), Expect = 0.11
Identities = 32/126 (25%), Positives = 58/126 (45%), Gaps = 5/126 (3%)
Query: 67 DTKRMGLARSLAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRERQ 126
D + L + EK+KK L++ E+S + + G++D D K + E++
Sbjct: 539 DLAKKDLEKLKRKEKKKKKRLQKLEESGREERSV---AGKDDNADTDQEKKEEKGVSEKE 595
Query: 127 LNVKSSKKSKYHLSEEDDDEFEGIDGLGRDDFE-DEMLGEDDDETDET*NQEGSDERSYC 185
N ++++ +S+ +D+E E D DD E +E E D E+DE N + C
Sbjct: 596 NNELDVEENQ-EVSDHEDEEEEEEDEEEEDDIEGEESSDESDSESDEKANYQADLANITC 654
Query: 186 KKQVLQ 191
+ + Q
Sbjct: 655 EIAIKQ 660
>SN24_HUMAN (P51532) Possible global transcription activator SNF2L4
(SNF2-beta) (BRG-1 protein) (Mitotic growth and
transcription activator) (Brahma protein homolog 1)
(SWI/SNF related matrix associated actin dependent
regulator of chromatin subfamily A m
Length = 1647
Score = 37.7 bits (86), Expect = 0.14
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 28/251 (11%)
Query: 2 AKSSKRSIANGTNTSNKSTSKKKKNNKMGPEAVAMKAKAQKTNTNPFESIWSRRKFEVMG 61
++ KR G++T ST + K+++ + + A+K + NP +K
Sbjct: 1410 SRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAV 1469
Query: 62 QKRKGDTKRMGLARSLAVEKRKKTLLKEYEQSTKSSEF--IDRRIGEND-EGLDDFGK-A 117
K K + L+ +K L + YE K +F I RI + L+D K
Sbjct: 1470 IKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDV 1529
Query: 118 ILRSQRERQLNVKSSKKSKYHLSEEDDDEFEGIDGLGRD--DFEDEMLGEDDDETDET*N 175
+L Q + N++ S L ED + + R + ED+ GE+ +E +E
Sbjct: 1530 MLLCQNAQTFNLEGS------LIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEE 1583
Query: 176 QEGSDERSYCKKQVLQG*KSKR----KGKR*RPAGRIR*GLHFSGSFRGLVGSD*TTQDE 231
+ E K ++ G K K KG R RP+ GS V SD +++E
Sbjct: 1584 EGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPS---------RGSRAKPVVSDDDSEEE 1634
Query: 232 SFE---GSGEQ 239
E GSG +
Sbjct: 1635 QEEDRSGSGSE 1645
>YBE6_YEAST (P38193) Hypothetical 50.7 kDa protein in SEC17-QCR1
intergenic region
Length = 441
Score = 37.4 bits (85), Expect = 0.19
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 75 RSLAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQRERQLNVKSSKK 134
R + + ++ LLK+ ++ E+ + G ND+ D+ G+ N +S
Sbjct: 213 REMGNKSKRNVLLKD--ENFMVEEYYEDDCGINDDNSDNKGQ-----------NCQSDVT 259
Query: 135 SKYHLSEEDDDEFEGI--DGLGRDDFEDEMLGE-DDDETDET*NQEGSDER 182
E+DDD + DG DD +D+ +G DDDE D+ Q G +
Sbjct: 260 KNNSDDEDDDDNDDDYREDGADEDDEDDDHMGSTDDDEDDDEDRQAGESTK 310
>SAS3_YEAST (P34218) SAS3 protein
Length = 831
Score = 37.4 bits (85), Expect = 0.19
Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 29/185 (15%)
Query: 15 TSNKSTSKKKKNNKMGPEAVA-----------MKAKAQKTNTNPFESIWSRRKFEVMGQK 63
+S TSK NN + PE A + NTN I+ K +
Sbjct: 632 SSEHKTSKLHVNNIIEPEVPATDFFEDTVSSLTEYMCDYKNTNNDRLIYQAEK-----RV 686
Query: 64 RKGDTKRMGLARS-LAVEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAILRSQ 122
+ R G+ RS + E + T RR ND G+ + + +
Sbjct: 687 LESIHDRKGIPRSKFSTETHWELCFTIKNSETPLGNHAARR---NDTGISSLEQDEVEND 743
Query: 123 RERQLNVKSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGSDER 182
+ +L V + K +ED+DE +D DD EDE + E++DE ++T ++ D+
Sbjct: 744 VDTELYVGENAK-----EDEDEDEDFTLD----DDIEDEQISEENDEEEDTYEEDSDDDE 794
Query: 183 SYCKK 187
+K
Sbjct: 795 DGKRK 799
>MP62_LYTPI (P91753) Mitotic apparatus protein p62
Length = 411
Score = 37.0 bits (84), Expect = 0.24
Identities = 37/122 (30%), Positives = 60/122 (48%), Gaps = 11/122 (9%)
Query: 61 GQKRKGDTKRMGLARSLA-VEKRKKTLLKEYEQSTKSSEFIDRRIGENDEGLDDFGKAIL 119
G+KR + + G A+ LA V+K + K S ++ ID E+DE +D+ K
Sbjct: 206 GKKRPAPSAK-GPAKKLAKVDKDGTSKRKVPNGSVENGHAIDD--DEDDEEDEDY-KVGD 261
Query: 120 RSQRERQLNVKSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETDET*NQEGS 179
+ E + + ++ + EEDD+E LG DD ED+ E+DDE +E + E
Sbjct: 262 EEEEEEATSGEEEEEDEEEEEEEDDEEM----ALGDDDDEDD--DEEDDEDEEGMDDEDE 315
Query: 180 DE 181
+E
Sbjct: 316 EE 317
Score = 35.8 bits (81), Expect = 0.54
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 141 EEDDDEFEGIDG--LGRDDFEDEMLGEDDDETDET*NQEGSDERSYCKKQVLQG*KSKRK 198
EE +FEG + +G +D EDE GE+D+E +ET ++GS +R K ++G + K K
Sbjct: 123 EEFGKDFEGAEAYEVGDEDLEDEDEGEEDEEEEET-PKKGSPKRIVKKIAAVKG-RMKGK 180
Query: 199 G 199
G
Sbjct: 181 G 181
>IFH1_YEAST (P39520) IFH1 protein (RRP3 protein)
Length = 1085
Score = 37.0 bits (84), Expect = 0.24
Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 13/172 (7%)
Query: 3 KSSKRSIANGTNTSNKSTSKKKKNNKMGPEAVAMKAKAQKTNTNPFESIWSRRKFEVM-- 60
KS ++S N + S K + K+ K G ++ + + P S R+F ++
Sbjct: 5 KSPRKSTINHSTHSGKLPANIKRLIKKG------ESDTKSRQSPPTLSTTRPRRFSLIYS 58
Query: 61 GQKRKGDTKRMGLARSLAVEKRKKTLLKEYEQST-KSSEFIDRRIGENDEGLDDFGKAIL 119
+ D +S K K+ S K S+ I R+I +DEG + +
Sbjct: 59 SESSLSDVSDSDKNKSTNPHKIKRKAKNISNNSQGKKSKLIQRQIDNDDEGTESSDYQAV 118
Query: 120 RSQRERQLNVKSSKKSKYHLSEEDDDEFEGIDGLGRDDFEDEMLGEDDDETD 171
E + + S++ + E+DDD+ D G D D DD+ D
Sbjct: 119 TDGEESENEEEESEEEEEDDDEDDDDD----DDDGSDSDSDSETSSDDENID 166
>CE29_BOVIN (Q9TU23) Centrosomal protein Cep290
Length = 1453
Score = 37.0 bits (84), Expect = 0.24
Identities = 46/170 (27%), Positives = 68/170 (39%), Gaps = 27/170 (15%)
Query: 10 ANGTNTSNKSTSKKKKNNKMGPEAVAMK------------AKAQKTNTNPFESIWSR--- 54
A+G TS K + + +N K+ E +K +KA+ T E+ R
Sbjct: 1233 ASGILTSEKMANIEMENEKLKAELEKLKVHLGRQLSMHYESKAKGTEKIVAENERLRKEL 1292
Query: 55 RKFEVMGQKRKGDTKRMGLARSLAV--------EKRKKTLLKEYEQSTKSSEFIDRRIGE 106
+K E++ +GD GL R L V EK K+ L+ E S K D I +
Sbjct: 1293 KKIEILKHVPEGDETEQGLQRELRVLRLANSQLEKEKEELIHRIEIS-KDQNGPDSTISD 1351
Query: 107 ND---EGLDDFGKAILRSQRERQLNVKSSKKSKYHLSEEDDDEFEGIDGL 153
D E + D + S E+Q + +K K L D FE I+ L
Sbjct: 1352 PDHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKELENFDPSFFEEIEDL 1401
>NOG2_CRYBA (Q6TGJ8) Nucleolar GTP-binding protein 2
Length = 731
Score = 36.6 bits (83), Expect = 0.32
Identities = 40/171 (23%), Positives = 74/171 (42%), Gaps = 22/171 (12%)
Query: 33 AVAMKAKAQKTNTNPFESIWSRRKFEVMGQKRKGDTKRMGLARSLAVEKRKKTLLKEYEQ 92
A +A+ +KT E R E++ ++ + K +G+ R VE+ + +
Sbjct: 515 ATTTEAEKKKTEAEEQELAEERETMEILEEQERSLGKVLGIKRVKGVEQP----ISKIVT 570
Query: 93 STKSSEFIDRRIGENDEGLDDFGKAILRSQRERQLNVKSSKKSKYHLSEEDDDEFEGIDG 152
TK RR E +E +D + + + + E + EED+DE E +
Sbjct: 571 MTKFIGDDARRYVEEEEVVDQDKEMVEKEEEEEE--------------EEDEDEDEEEEE 616
Query: 153 LGRDD-FEDEMLGED-DDETDET*NQEGSDERSYCKKQVLQG*KSKRKGKR 201
L +D F +E D +E +E+ +E DE +++ + +K+ GKR
Sbjct: 617 LAWEDVFPEEADAVDGGEEVEESDKEETDDEEDVDEEEAVP--SAKQLGKR 665
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.377 0.171 0.654
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,416,088
Number of Sequences: 164201
Number of extensions: 2683368
Number of successful extensions: 29518
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 28508
Number of HSP's gapped (non-prelim): 459
length of query: 930
length of database: 59,974,054
effective HSP length: 120
effective length of query: 810
effective length of database: 40,269,934
effective search space: 32618646540
effective search space used: 32618646540
T: 11
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.6 bits)
S2: 71 (32.0 bits)
Medicago: description of AC142096.6