BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141923.5 - phase: 0 /pseudo
(648 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VIV_ORYSA (P37398) Viviparous protein homolog 84 1e-15
VIV1_MAIZE (P26307) Regulatory protein viviparous-1 81 7e-15
ABI3_ARATH (Q01593) Abscisic acid-insensitive protein 3 80 2e-14
RAV1_ARATH (Q9ZWM9) DNA-binding protein RAV1 72 3e-12
ARFJ_ARATH (Q9SKN5) Auxin response factor 10 54 1e-06
ARFQ_ARATH (Q84WU6) Auxin response factor 17 52 6e-06
ARFP_ARATH (Q93YR9) Auxin response factor 16 50 1e-05
ARFM_ARATH (Q9FX25) Putative auxin response factor 13 45 5e-04
ARFT_ARATH (Q9C7I9) Putative auxin response factor 20 45 8e-04
ARFL_ARATH (Q9XID4) Putative auxin response factor 12 44 0.001
ARFI_ARATH (Q9XED8) Auxin response factor 9 42 0.004
ARFU_ARATH (Q9C8N9) Putative auxin response factor 21 42 0.005
ARFO_ARATH (Q9LQE3) Putative auxin response factor 15 42 0.007
ARFN_ARATH (Q9LQE8) Putative auxin response factor 14 40 0.015
ARFW_ARATH (Q9LP07) Putative auxin response factor 23 39 0.055
ARFK_ARATH (Q9ZPY6) Auxin response factor 11 38 0.095
ZN16_HUMAN (P17020) Zinc finger protein 16 (Zinc finger protein ... 36 0.28
Z287_MOUSE (Q9EQB9) Zinc finger protein 287 (Zfp-287) (Zinc fing... 36 0.28
ARFR_ARATH (Q9C5W9) Auxin response factor 18 36 0.28
PAX6_BRARE (P26630) Paired box protein Pax[Zf-a] (Pax-6) 35 0.47
>VIV_ORYSA (P37398) Viviparous protein homolog
Length = 728
Score = 84.0 bits (206), Expect = 1e-15
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMGNE-WTFQFRFWPNN 379
L +KVL SD G +GR+VLPK AE LP + +GV + +DI ++ W ++RFWPNN
Sbjct: 536 LLQKVLKQSDVGSLGRIVLPKKEAEVHLPELKTRDGVSIPMEDIGTSQVWNMRYRFWPNN 595
Query: 380 NSRMYVLEGVTPCIQSLQLNAGD-TVTFSRIDPGEKFLFG--FRRSLTSIVTQDASTSSH 436
SRMY+LE ++S +L GD V +S I G+ + G RR+ + H
Sbjct: 596 KSRMYLLENTGDFVRSNELQEGDFIVIYSDIKSGKYLIRGVKVRRAAQEQGNSSGAVGKH 655
Query: 437 SNG 439
+G
Sbjct: 656 KHG 658
>VIV1_MAIZE (P26307) Regulatory protein viviparous-1
Length = 691
Score = 81.3 bits (199), Expect = 7e-15
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDI-MGNEWTFQFRFWPNN 379
L +KVL SD G +GR+VLPK AE LP + +G+ + +DI W ++RFWPNN
Sbjct: 516 LLQKVLKQSDVGSLGRIVLPKKEAEVHLPELKTRDGISIPMEDIGTSRVWNMRYRFWPNN 575
Query: 380 NSRMYVLEGVTPCIQSLQLNAGD-TVTFSRIDPGEKFLFGFR 420
SRMY+LE ++S +L GD V +S + G+ + G +
Sbjct: 576 KSRMYLLENTGEFVRSNELQEGDFIVIYSDVKSGKYLIRGVK 617
>ABI3_ARATH (Q01593) Abscisic acid-insensitive protein 3
Length = 720
Score = 79.7 bits (195), Expect = 2e-14
Identities = 52/146 (35%), Positives = 78/146 (52%), Gaps = 8/146 (5%)
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDI-MGNEWTFQFRFWPNN 379
L +KVL SD G +GR+VLPK AE LP + +G+ L +DI W ++RFWPNN
Sbjct: 571 LLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMRYRFWPNN 630
Query: 380 NSRMYVLEGVTPCIQSLQLNAGD-TVTFSRIDPGEKFLFGFRRSLTSIVTQDASTSSHSN 438
SRMY+LE +++ L GD V +S + G+ + G + S +A SS +
Sbjct: 631 KSRMYLLENTGDFVKTNGLQEGDFIVIYSDVKCGKYLIRGVKVRQPSGQKPEAPPSSAAT 690
Query: 439 GILIKDTNFSGAPQNLNSLSSFSNLL 464
K N S +N+N+ S +N++
Sbjct: 691 ----KRQNKS--QRNINNNSPSANVV 710
>RAV1_ARATH (Q9ZWM9) DNA-binding protein RAV1
Length = 344
Score = 72.4 bits (176), Expect = 3e-12
Identities = 40/101 (39%), Positives = 63/101 (61%), Gaps = 6/101 (5%)
Query: 321 LFEKVLSPSDAGRIGRLVLPKACAEAFLP---RILQSEGVPLQFQDIMGNEWTFQFRFWP 377
LFEK ++PSD G++ RLV+PK AE P + +GV L F+D+ G W F++ +W
Sbjct: 187 LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW- 245
Query: 378 NNNSRMYVL-EGVTPCIQSLQLNAGDTVTFSRIDPGEKFLF 417
N+S+ YVL +G + ++ L AGD V+FSR + ++ L+
Sbjct: 246 -NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLY 285
>ARFJ_ARATH (Q9SKN5) Auxin response factor 10
Length = 693
Score = 53.9 bits (128), Expect = 1e-06
Identities = 45/153 (29%), Positives = 71/153 (45%), Gaps = 13/153 (8%)
Query: 322 FEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQFRFWPN 378
F K L+ SDA G +P+ CAE PR+ S P+Q +DI G W F+ +
Sbjct: 115 FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFR-HIYRG 173
Query: 379 NNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRSLTSIVTQDASTSSHSN 438
R + G + + +L AGD++ F R + G+ G RR+ + +A + +
Sbjct: 174 TPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGD-LCVGIRRAKRGGLGSNAGSDNPYP 232
Query: 439 GILIKDTNFSGAPQNLNSLSSFSNLLQSMKGNG 471
G FSG ++ S ++ S L+ MK NG
Sbjct: 233 G-------FSGFLRDDESTTTTSKLMM-MKRNG 257
>ARFQ_ARATH (Q84WU6) Auxin response factor 17
Length = 585
Score = 51.6 bits (122), Expect = 6e-06
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 309 KLSGDLK-STVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDI 364
+ GD+ + V F K+L+PSDA G +P+ CA++ P + P+Q DI
Sbjct: 105 RFDGDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDI 164
Query: 365 MGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRSLT 424
G W F+ + R + G + + S +L AGD+V F R E F+ G RR T
Sbjct: 165 HGAVWDFR-HIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFI-GVRR--T 220
Query: 425 SIVTQDASTS 434
I + D +S
Sbjct: 221 PISSSDGGSS 230
>ARFP_ARATH (Q93YR9) Auxin response factor 16
Length = 670
Score = 50.4 bits (119), Expect = 1e-05
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 316 STVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQ 372
S P F K L+ SDA G +P+ CAE PR+ + P+Q +D+ G+ W F+
Sbjct: 114 SEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFR 173
Query: 373 FRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRS 422
+ R + G + + +L AGD++ F R + G+ G RR+
Sbjct: 174 -HIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGD-LCVGIRRA 221
>ARFM_ARATH (Q9FX25) Putative auxin response factor 13
Length = 623
Score = 45.4 bits (106), Expect = 5e-04
Identities = 35/127 (27%), Positives = 55/127 (42%), Gaps = 5/127 (3%)
Query: 300 PRITDQELEKLSGDLKSTVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPL 359
P T+ + D + +V F K+L+ SD G L++PK A P + S+ +
Sbjct: 104 PDTTEVMTHNTTMDTRRPIVYFFSKILTASDVSLSGGLIIPKQYAIECFPPLDMSQPIST 163
Query: 360 Q---FQDIMGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSL-QLNAGDTVTFSRIDPGEKF 415
Q +D+ G EW+F+ F M+ G + +L GD R + GE
Sbjct: 164 QNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGENGE-L 222
Query: 416 LFGFRRS 422
FG RR+
Sbjct: 223 RFGIRRA 229
>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20
Length = 606
Score = 44.7 bits (104), Expect = 8e-04
Identities = 36/110 (32%), Positives = 53/110 (47%), Gaps = 9/110 (8%)
Query: 318 VVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQ-- 372
+V F KVL+ SD G +PK A LP + S+ +P Q +D+ GN+W F+
Sbjct: 122 LVNSFTKVLTASDTSAYGGFFVPKKHAIECLPPLDMSQPLPAQELLAKDLHGNQWRFRHS 181
Query: 373 FRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRS 422
+R P +S + G S +L GD + F R + GE G RR+
Sbjct: 182 YRGTPQRHS---LTTGWNEFTTSKKLVKGDVIVFVRGETGE-LRVGIRRA 227
>ARFL_ARATH (Q9XID4) Putative auxin response factor 12
Length = 593
Score = 44.3 bits (103), Expect = 0.001
Identities = 35/108 (32%), Positives = 49/108 (44%), Gaps = 5/108 (4%)
Query: 318 VVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQFR 374
+V F KVL+ SD G +PK A LP + S+ +P Q D+ GN+W F
Sbjct: 122 LVNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHN 181
Query: 375 FWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRS 422
+ R + G S +L AGD + F R + GE G RR+
Sbjct: 182 Y-RGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGE-LRVGIRRA 227
>ARFI_ARATH (Q9XED8) Auxin response factor 9
Length = 638
Score = 42.4 bits (98), Expect = 0.004
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 313 DLKSTVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEW 369
+L+ V F KVL+ SD G + + A LP + ++ P Q +D+ G +W
Sbjct: 107 ELQRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQW 166
Query: 370 TFQ--FRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRSLTSIV 427
F+ FR P R + G + + S +L AGDT F R + GE + R +L
Sbjct: 167 KFKHIFRGQPR---RHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSS 223
Query: 428 TQDASTSSHS 437
+ SSHS
Sbjct: 224 MPSSVISSHS 233
>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21
Length = 606
Score = 42.0 bits (97), Expect = 0.005
Identities = 36/110 (32%), Positives = 52/110 (46%), Gaps = 9/110 (8%)
Query: 318 VVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQ-- 372
+V F KVL+ SD G +PK A LP + S+ +P Q D+ N+W F+
Sbjct: 122 LVNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHN 181
Query: 373 FRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRS 422
+R P +S + G I S +L GD + F R + GE G RR+
Sbjct: 182 YRGTPQRHS---LTTGWNEFITSKKLVKGDVIVFVRGETGE-LRVGIRRA 227
>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15
Length = 593
Score = 41.6 bits (96), Expect = 0.007
Identities = 34/108 (31%), Positives = 50/108 (45%), Gaps = 5/108 (4%)
Query: 318 VVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQFR 374
+V F KVL+ SD G +PK A LP + S+ +P Q D+ GN+W+F+
Sbjct: 122 LVNSFTKVLTASDISANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQWSFRHS 181
Query: 375 FWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRS 422
+ R + G S +L GD + F R + GE G RR+
Sbjct: 182 Y-RGTPQRHLLTTGWNEFTTSKKLVKGDVIVFVRGETGE-LRVGIRRA 227
>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14
Length = 605
Score = 40.4 bits (93), Expect = 0.015
Identities = 34/108 (31%), Positives = 49/108 (44%), Gaps = 5/108 (4%)
Query: 318 VVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQFR 374
+V F KVL+ SD G +PK A LP + S+ +P Q D+ GN+W F+
Sbjct: 122 LVNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFR-H 180
Query: 375 FWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRS 422
+ R + G S +L GD + F R + GE G RR+
Sbjct: 181 IYRGTAQRHLLTIGWNAFTTSKKLVEGDVIVFVRGETGE-LRVGIRRA 227
>ARFW_ARATH (Q9LP07) Putative auxin response factor 23
Length = 222
Score = 38.5 bits (88), Expect = 0.055
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 318 VVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQFR 374
+V F KVL+ SD G +P A LP + S+ +P Q D+ GN+W F+
Sbjct: 122 IVNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHS 181
Query: 375 F-WPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGE 413
+ P ++ G S +L GD + F+R + GE
Sbjct: 182 YRVPRGDT-----TGWNAFTTSKKLVVGDVIVFARGETGE 216
>ARFK_ARATH (Q9ZPY6) Auxin response factor 11
Length = 601
Score = 37.7 bits (86), Expect = 0.095
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 319 VPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQ--F 373
V F K+L+ SD G + + A LP + ++ P Q +D+ G EW F+ F
Sbjct: 121 VDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIF 180
Query: 374 RFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFRRSLTSIVTQDAST 433
R P R + G + + S +L AGD F R + G+ G RR T AS
Sbjct: 181 RGQPR---RHLLTTGWSTFVTSKRLVAGDAFVFLRGETGD-LRVGVRRLAKQQSTMPASV 236
Query: 434 SS 435
S
Sbjct: 237 IS 238
>ZN16_HUMAN (P17020) Zinc finger protein 16 (Zinc finger protein
KOX9)
Length = 670
Score = 36.2 bits (82), Expect = 0.28
Identities = 23/82 (28%), Positives = 32/82 (38%), Gaps = 2/82 (2%)
Query: 27 SGGFAKLCNKCGLAYENSLFCDKFHRHETGWR--KCSNCSKPIHSGCIVSKSSFEYLDFG 84
SG +C++CG A+ S K HR TG + +C C K + K +
Sbjct: 332 SGEKPYVCSECGKAFRRSSNLIKHHRTHTGEKPFECGECGKAFSQSAHLRKHQRVHTGEK 391
Query: 85 GITCVTCVKPSQLCLNTENHNR 106
C C KP N H+R
Sbjct: 392 PYECNDCGKPFSRVSNLIKHHR 413
>Z287_MOUSE (Q9EQB9) Zinc finger protein 287 (Zfp-287) (Zinc finger
protein SKAT-2)
Length = 759
Score = 36.2 bits (82), Expect = 0.28
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 27 SGGFAKLCNKCGLAYENSLFCDKFHRHETGWR--KCSNCSKPIHSGCIVSKSSFEYLDFG 84
+G + +CN CG A+ S + HR TG + KCS C K +++ +
Sbjct: 585 TGEKSYICNVCGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIHNGEK 644
Query: 85 GITCVTCVKPSQLCLNTENHNR 106
C TC K + N H R
Sbjct: 645 PFKCNTCGKAYRQGANLTQHQR 666
>ARFR_ARATH (Q9C5W9) Auxin response factor 18
Length = 602
Score = 36.2 bits (82), Expect = 0.28
Identities = 37/128 (28%), Positives = 58/128 (44%), Gaps = 12/128 (9%)
Query: 322 FEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQ---FQDIMGNEWTFQ--FRFW 376
F K+L+ SD G + + A LP + ++ P Q +D+ G EW F+ FR
Sbjct: 128 FVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQ 187
Query: 377 PNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGEKFLFGFR---RSLTSIVTQDAST 433
P R + G + + S +L AGD F R + G+ G R R +++ T S+
Sbjct: 188 PR---RHLLTTGWSTFVSSKRLVAGDAFVFLRGENGD-LRVGVRRLARHQSTMPTSVISS 243
Query: 434 SSHSNGIL 441
S G+L
Sbjct: 244 QSMHLGVL 251
>PAX6_BRARE (P26630) Paired box protein Pax[Zf-a] (Pax-6)
Length = 437
Score = 35.4 bits (80), Expect = 0.47
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 24/126 (19%)
Query: 177 KEDTRFLNVMKHSSHLTAFTTLENNRPSWETKSIDETLSLKMALGTSSRNSVLPLATEIG 236
+ DT N + +FT + NN P ++ TSS + +LP + +
Sbjct: 335 RSDTALTNTYSALPPMPSFT-MANNLPMQPSQ-------------TSSYSCMLPTSPSVN 380
Query: 237 EGKLEGKASSHFQQGQTSQSILAQLSKTGIAMNLETNKGMISHPPRRPPADVKGKNQLLS 296
+ H Q SQS+ A + T+ G+IS P P V G +S
Sbjct: 381 GRSYDTYTPPHMQAHMNSQSMAASGT---------TSTGLIS-PGVSVPVQVPGSEPDMS 430
Query: 297 RYWPRI 302
+YWPR+
Sbjct: 431 QYWPRL 436
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,439,660
Number of Sequences: 164201
Number of extensions: 3286279
Number of successful extensions: 8174
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 8089
Number of HSP's gapped (non-prelim): 117
length of query: 648
length of database: 59,974,054
effective HSP length: 117
effective length of query: 531
effective length of database: 40,762,537
effective search space: 21644907147
effective search space used: 21644907147
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Medicago: description of AC141923.5