BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141862.23 + phase: 0
(295 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Ar... 76 1e-13
EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABR... 70 5e-12
TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop... 63 1e-09
ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein 62 2e-09
ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein 62 2e-09
ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF ex... 57 4e-08
PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic heli... 55 2e-07
PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrom... 51 4e-06
IND_ARATH (O81313) INDEHISCENT protein 49 1e-05
ESC1_SCHPO (Q04635) Protein esc1 44 4e-04
ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator... 42 0.002
ARNT_RABIT (O02748) Aryl hydrocarbon receptor nuclear translocat... 42 0.002
ARNT_MOUSE (P53762) Aryl hydrocarbon receptor nuclear translocat... 42 0.002
ARNT_HUMAN (P27540) Aryl hydrocarbon receptor nuclear translocat... 42 0.002
YAWC_SCHPO (Q10186) Hypothetical protein C3F10.12c in chromosome I 40 0.005
BMAL_HUMAN (O00327) Aryl hydrocarbon receptor nuclear translocat... 40 0.005
CYCL_DROME (O61734) Cycle protein (Brain and muscle ARNT-like 1)... 40 0.007
BMAL_RAT (Q9EPW1) Aryl hydrocarbon receptor nuclear translocator... 40 0.007
BMAL_MESAU (O88529) Aryl hydrocarbon receptor nuclear translocat... 40 0.007
ARN2_MOUSE (Q61324) Aryl hydrocarbon receptor nuclear translocat... 39 0.012
>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous
Arabidopsis protein-1) (RAP-1) (Basic helix-loop-helix
protein 6) (bHLH6) (AtbHLH006) (rd22BP1)
Length = 623
Score = 75.9 bits (185), Expect = 1e-13
Identities = 85/287 (29%), Positives = 132/287 (45%), Gaps = 49/287 (17%)
Query: 30 FSESPQESTYSSHTNINNKR-------IHSESTQNSSFPTQSPDQSVASATPPTKLLKAS 82
FS+S Q SS T N +HS+ TQN F + S + T + S
Sbjct: 305 FSKSIQFENGSSSTITENPNLDPTPSPVHSQ-TQNPKFNNTFSRELNFSTSSSTLVKPRS 363
Query: 83 PKIISF-DYSNNDSKVKKPKTEIGYG--EN-------LNFGSVISQGDYYKREN------ 126
+I++F D S P + G EN LN V+S GD E+
Sbjct: 364 GEILNFGDEGKRSSGNPDPSSYSGQTQFENKRKRSMVLNEDKVLSFGDKTAGESDHSDLE 423
Query: 127 ----KVSAVNRNPI-----------QAQDHVMAERRRREKLSQRFISLSSLLPGLKKMDK 171
K AV + P + +HV AER+RREKL+QRF +L +++P + KMDK
Sbjct: 424 ASVVKEVAVEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDK 483
Query: 172 ATILEDAIKHLKQLNER-VKTLEEHVADK----KVESAVFMKRSILFEEDDRSSCDENSD 226
A++L DAI ++ +L + VKT E + K +V+ + +++ D SSC
Sbjct: 484 ASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRKASASGGDMSSSCSSIKP 543
Query: 227 QSLSKIEARVSGKDMLIRIHGDKH---CGRTATAILN-ELEKHHLSV 269
+ +IE ++ G D +IR+ K R +A+++ ELE +H S+
Sbjct: 544 VGM-EIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASM 589
>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3)
(Basic helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
(AtMyc-146)
Length = 596
Score = 70.5 bits (171), Expect = 5e-12
Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 29/191 (15%)
Query: 40 SSHTNINNKRIHSESTQNSSFPTQSPDQSVASATPPTKLLKASPKIISFDYSNNDSKVKK 99
S+H N+++ +H + ++ F T T L P+ +FD ++ ++ K+
Sbjct: 319 SNHVNMDDD-VHYQGVISTIFKT-------------THQLILGPQFQNFDKRSSFTRWKR 364
Query: 100 PKTEIGYGENLNFGSVISQGDYYKRENKVSAVNRN-------PIQAQDHVMAERRRREKL 152
+ GE SQ K +V +N+ P + +H ++E++RREKL
Sbjct: 365 SSSVKTLGEK-------SQKMIKKILFEVPLMNKKEELLPDTPEETGNHALSEKKRREKL 417
Query: 153 SQRFISLSSLLPGLKKMDKATILEDAIKHLKQLNERVKTLEEHVADKKVESAV-FMKRSI 211
++RF++L S++P + K+DK +IL+D I++L+ L +RV+ LE E+ + MKR
Sbjct: 418 NERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQELESCRESADTETRITMMKRKK 477
Query: 212 LFEEDDRSSCD 222
+E++R+S +
Sbjct: 478 PDDEEERASAN 488
>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic
helix-loop-helix protein 42) (bHLH42) (AtbHLH042)
Length = 518
Score = 62.8 bits (151), Expect = 1e-09
Identities = 31/61 (50%), Positives = 44/61 (71%)
Query: 133 RNPIQAQDHVMAERRRREKLSQRFISLSSLLPGLKKMDKATILEDAIKHLKQLNERVKTL 192
R P + HV+AERRRREKL+++FI+L S++P + KMDK +IL D I ++ L +RV L
Sbjct: 356 RLPREDLSHVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHEL 415
Query: 193 E 193
E
Sbjct: 416 E 416
>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein
Length = 612
Score = 62.0 bits (149), Expect = 2e-09
Identities = 28/55 (50%), Positives = 44/55 (79%)
Query: 139 QDHVMAERRRREKLSQRFISLSSLLPGLKKMDKATILEDAIKHLKQLNERVKTLE 193
++HVM+ER+RREKL++ F+ L SLLP + +++KA+IL + I +LK+L RV+ LE
Sbjct: 417 KNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQELE 471
>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein
Length = 610
Score = 62.0 bits (149), Expect = 2e-09
Identities = 28/55 (50%), Positives = 44/55 (79%)
Query: 139 QDHVMAERRRREKLSQRFISLSSLLPGLKKMDKATILEDAIKHLKQLNERVKTLE 193
++HVM+ER+RREKL++ F+ L SLLP + +++KA+IL + I +LK+L RV+ LE
Sbjct: 415 KNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQELE 469
>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF
expression 1) (Basic helix-loop-helix protein 116)
(bHLH116) (AtbHLH116)
Length = 494
Score = 57.4 bits (137), Expect = 4e-08
Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 141 HVMAERRRREKLSQRFISLSSLLPGLKKMDKATILEDAIKHLKQLNERVKTLEEHVADKK 200
++MAERRRR+KL+ R L S++P + KMD+A+IL DAI +LK+L +R+ L +
Sbjct: 308 NLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTP 367
Query: 201 VESAVFMKRSI--LFEEDDRSSC---DENSDQSL-------SKIEARVSGKDMLIRIHGD 248
S S L SC +E SL +++E R+ + + IH
Sbjct: 368 PGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLR-EGRAVNIH-- 424
Query: 249 KHCGR---TATAILNELEKHHLSVQSSSILPFGNNYLDI 284
CGR A + L+ L VQ + I F LD+
Sbjct: 425 MFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDV 463
>PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic
helix-loop-helix protein 9) (bHLH9) (AtbHLH009) (Short
under red-light 2)
Length = 430
Score = 55.5 bits (132), Expect = 2e-07
Identities = 26/69 (37%), Positives = 46/69 (65%)
Query: 124 RENKVSAVNRNPIQAQDHVMAERRRREKLSQRFISLSSLLPGLKKMDKATILEDAIKHLK 183
+ N+ S NR A+ H ++ERRRR+++++R +L L+P K DKA+IL++AI +LK
Sbjct: 245 KSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLK 304
Query: 184 QLNERVKTL 192
L +++ +
Sbjct: 305 SLQLQLQVM 313
>PIF3_ARATH (O80536) Phytochrome-interacting factor 3
(Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008)
Length = 524
Score = 50.8 bits (120), Expect = 4e-06
Identities = 21/55 (38%), Positives = 42/55 (76%)
Query: 138 AQDHVMAERRRREKLSQRFISLSSLLPGLKKMDKATILEDAIKHLKQLNERVKTL 192
A+ H ++ERRRR++++++ +L L+P K+DKA++L++AI++LK L +V+ +
Sbjct: 345 AEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIM 399
>IND_ARATH (O81313) INDEHISCENT protein
Length = 169
Score = 49.3 bits (116), Expect = 1e-05
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 132 NRNPIQAQD--HVMAERRRREKLSQRFISLSSLLPGLKKMDKATILEDAIKHLKQLNERV 189
NR ++ D + RRRRE++S++ L ++PG KMD A++L++AI++ K L +V
Sbjct: 83 NRRNVRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQV 142
Query: 190 KTLEEH 195
+ L+ H
Sbjct: 143 RILQPH 148
>ESC1_SCHPO (Q04635) Protein esc1
Length = 413
Score = 44.3 bits (103), Expect = 4e-04
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 33/190 (17%)
Query: 35 QESTYSSHTNINNKRIHSESTQNSSFPTQSPDQSVASATPP-------TKLLKASPKIIS 87
Q+S Y ++ S ++++ P QSP Q S P + ASP S
Sbjct: 227 QQSMYVPQQQTSHSSGASYQNESANPPVQSPMQYSYSQGQPFSYPQHKNQSFSASPIDPS 286
Query: 88 FDYSNNDSKVKKPKTEIGYGENLNFGSVISQGDYYKRENKV--------SAVNRNPIQAQ 139
Y + P++ N+ +G + +Y +R + RNP
Sbjct: 287 MSYV-----YRAPESFSSINANVPYG----RNEYLRRVTSLVPNQPEYTGPYTRNPELRT 337
Query: 140 DHVMAERRRREKLSQRFISLSSLLPGLK--KMDKATILEDAIKHLKQLNER-------VK 190
H +AER+RR+++ + F L LP K K K +L AI++++QL VK
Sbjct: 338 SHKLAERKRRKEIKELFDDLKDALPLDKSTKSSKWGLLTRAIQYIEQLKSEQVALEAYVK 397
Query: 191 TLEEHVADKK 200
+LEE++ K
Sbjct: 398 SLEENMQSNK 407
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator
(ARNT protein) (Dioxin receptor, nuclear translocator)
(Hypoxia-inducible factor 1 beta) (HIF-1 beta)
Length = 800
Score = 41.6 bits (96), Expect = 0.002
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 121 YYKRENKVSAVNRNPIQAQDHVMAERRRREKLSQRFISLSSLLPG----LKKMDKATILE 176
+ + +++ S+ ++ + ++H ERRRR K++ LS ++P +K DK TIL
Sbjct: 74 FARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILR 133
Query: 177 DAIKHLKQL 185
A+ H+K L
Sbjct: 134 MAVSHMKSL 142
>ARNT_RABIT (O02748) Aryl hydrocarbon receptor nuclear translocator
(ARNT protein) (Dioxin receptor, nuclear translocator)
(Hypoxia-inducible factor 1 beta) (HIF-1 beta)
Length = 790
Score = 41.6 bits (96), Expect = 0.002
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 121 YYKRENKVSAVNRNPIQAQDHVMAERRRREKLSQRFISLSSLLPG----LKKMDKATILE 176
+ + +++ S+ ++ + ++H ERRRR K++ LS ++P +K DK TIL
Sbjct: 74 FARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDIVPTCSALARKPDKLTILR 133
Query: 177 DAIKHLKQL 185
A+ H+K L
Sbjct: 134 MAVSHMKSL 142
>ARNT_MOUSE (P53762) Aryl hydrocarbon receptor nuclear translocator
(ARNT protein) (Dioxin receptor, nuclear translocator)
(Hypoxia-inducible factor 1 beta) (HIF-1 beta)
Length = 791
Score = 41.6 bits (96), Expect = 0.002
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 121 YYKRENKVSAVNRNPIQAQDHVMAERRRREKLSQRFISLSSLLPG----LKKMDKATILE 176
+ + +++ S+ ++ + ++H ERRRR K++ LS ++P +K DK TIL
Sbjct: 74 FARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILR 133
Query: 177 DAIKHLKQL 185
A+ H+K L
Sbjct: 134 MAVSHMKSL 142
>ARNT_HUMAN (P27540) Aryl hydrocarbon receptor nuclear translocator
(ARNT protein) (Dioxin receptor, nuclear translocator)
(Hypoxia-inducible factor 1 beta) (HIF-1 beta)
Length = 789
Score = 41.6 bits (96), Expect = 0.002
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 121 YYKRENKVSAVNRNPIQAQDHVMAERRRREKLSQRFISLSSLLPG----LKKMDKATILE 176
+ + +++ S+ ++ + ++H ERRRR K++ LS ++P +K DK TIL
Sbjct: 74 FARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILR 133
Query: 177 DAIKHLKQL 185
A+ H+K L
Sbjct: 134 MAVSHMKSL 142
>YAWC_SCHPO (Q10186) Hypothetical protein C3F10.12c in chromosome I
Length = 201
Score = 40.4 bits (93), Expect = 0.005
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 96 KVKKPKTEIGYGENLNFGSVISQGDYYKRENKVSAVNRNPIQAQDHVMAERRRREKLSQR 155
K+ PK + +N +V S G+ + V + + H ERRRRE +S+
Sbjct: 49 KIDFPKKNTAH-KNSTTSTVASSGNTTMEKPCVGSEEWYKAKRLSHKEVERRRREAISEG 107
Query: 156 FISLSSLLPGLKKMDKATILEDAIKHLKQLNE------RVKTLEEHVADKKVE 202
L++++PG +K +K +IL+ ++++ L E LE+ VAD ++
Sbjct: 108 IKELANIVPGCEK-NKGSILQRTAQYIRSLKEMEEMCREKSNLEKLVADHTIQ 159
>BMAL_HUMAN (O00327) Aryl hydrocarbon receptor nuclear
translocator-like protein 1 (Brain and muscle ARNT-like
1) (Member of PAS protein 3) (Basic-helix-loop-helix-PAS
orphan MOP3) (bHLH-PAS protein JAP3)
Length = 626
Score = 40.4 bits (93), Expect = 0.005
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 75 PTKLLKASPKIISFDYSNNDSKVKKPKTEIGYGENLNFGSVISQG--DYYKRENKVSAVN 132
PT LL +S S D K+ + Y E+++ G +Y + + ++
Sbjct: 20 PTDLLSSS-----LGTSGVDCNRKRKGSSTDYQESMDTDKDDPHGRLEYTEHQGRI---- 70
Query: 133 RNPIQAQDHVMAERRRREKLSQRFISLSSLLPGL----KKMDKATILEDAIKHLKQL 185
+N +A H E+RRR+K++ L+SL+P +K+DK T+L A++H+K L
Sbjct: 71 KNAREA--HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTL 125
>CYCL_DROME (O61734) Cycle protein (Brain and muscle ARNT-like 1)
(BMAL1) (MOP3)
Length = 413
Score = 40.0 bits (92), Expect = 0.007
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 118 QGDYYKRENKVSAVNRNPIQAQDHVMAERRRREKLSQRFISLSSLLPGL----KKMDKAT 173
+ + Y E + N + Q+H E+RRR+K++ LSS++P +K+DK T
Sbjct: 14 EDENYDEEKSARTSDEN--RKQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLT 71
Query: 174 ILEDAIKHLK 183
+L A++HL+
Sbjct: 72 VLRMAVQHLR 81
>BMAL_RAT (Q9EPW1) Aryl hydrocarbon receptor nuclear
translocator-like protein 1 (Brain and muscle ARNT-like
1) (Tic)
Length = 626
Score = 40.0 bits (92), Expect = 0.007
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 75 PTKLLKASPKIISFDYSNNDSKVKKPKTEIGYGENLNFGSVISQG--DYYKRENKVSAVN 132
PT LL S S D K+ + Y E+++ G +Y + + ++
Sbjct: 20 PTDLLSGS-----LSTSGVDCNRKRKGSATDYQESMDTDKDDPHGRLEYAEHQGRI---- 70
Query: 133 RNPIQAQDHVMAERRRREKLSQRFISLSSLLPGL----KKMDKATILEDAIKHLKQL 185
+N +A H E+RRR+K++ L+SL+P +K+DK T+L A++H+K L
Sbjct: 71 KNAREA--HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTL 125
>BMAL_MESAU (O88529) Aryl hydrocarbon receptor nuclear
translocator-like protein 1 (Brain and muscle ARNT-like
1)
Length = 626
Score = 40.0 bits (92), Expect = 0.007
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 75 PTKLLKASPKIISFDYSNNDSKVKKPKTEIGYGENLNFGSVISQG--DYYKRENKVSAVN 132
PT LL +S S D K+ + Y E+++ G +Y + + ++
Sbjct: 20 PTDLLSSS-----LGTSGVDCNRKRKGSATDYQESMDTDKDDPHGRLEYAEHQGRI---- 70
Query: 133 RNPIQAQDHVMAERRRREKLSQRFISLSSLLPGL----KKMDKATILEDAIKHLKQL 185
+N +A H E+RRR+K++ L+SL+P +K+DK T+L A++H+K L
Sbjct: 71 KNAREA--HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTL 125
>ARN2_MOUSE (Q61324) Aryl hydrocarbon receptor nuclear translocator
2 (ARNT protein 2)
Length = 712
Score = 39.3 bits (90), Expect = 0.012
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 139 QDHVMAERRRREKLSQRFISLSSLLPG----LKKMDKATILEDAIKHLKQL 185
++H ERRRR K++Q LS ++P +K DK TIL A+ H+K +
Sbjct: 66 ENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTILRMAVSHMKSM 116
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.312 0.128 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,106,508
Number of Sequences: 164201
Number of extensions: 1273434
Number of successful extensions: 4288
Number of sequences better than 10.0: 191
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 4205
Number of HSP's gapped (non-prelim): 230
length of query: 295
length of database: 59,974,054
effective HSP length: 109
effective length of query: 186
effective length of database: 42,076,145
effective search space: 7826162970
effective search space used: 7826162970
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC141862.23