BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141862.21 - phase: 0 /pseudo
         (659 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein     47  2e-04
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...    42  0.004
FSH_DROME (P13709) Female sterile homeotic protein (Fragile-chor...    32  5.3
GLP2_RAT (Q9Z0W0) Glucagon-like peptide 2 receptor precursor (GL...    32  6.9

>YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein
          Length = 146

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 23/85 (27%), Positives = 43/85 (50%)

Query: 557 NWLKLQMCLRAREKQRSWYLDSGCSRHMTGEKSLFLTLTMKDGGEVKFGGNQTGKIIGTG 616
           +WL +        K   W  D+GC+ HM  ++S+F + T     +   G   +  I+G+G
Sbjct: 62  SWLCMLSSTVPATKSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGSG 121

Query: 617 TIGNSSISINNVWLVDGLKHNLLSI 641
           T+   ++ +++V  V  L  NL+S+
Sbjct: 122 TVNIGTVQLHDVSYVPDLPVNLISV 146


>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 564 CLRAREKQRSWYLDSGCSRHMTGEKSLFLTLTMKDGGEVKFGGNQTGKIIGTGTI----- 618
           C+     +  W +D+  S H T  + LF      D G VK G     KI G G I     
Sbjct: 284 CMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTN 343

Query: 619 GNSSISINNVWLVDGLKHNLLSISQFCDNGYDVMFS 654
              ++ + +V  V  L+ NL+S      +GY+  F+
Sbjct: 344 VGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFA 379


>FSH_DROME (P13709) Female sterile homeotic protein (Fragile-chorion
            membrane protein)
          Length = 2038

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 246  KKKQMMMQKQPWG*WQQYHQKQYQKLNQIQKMKMRYIPKFLDK 288
            +++Q   Q+QP+G  QQ  Q+Q Q+  Q Q+  M Y+ + L K
Sbjct: 1389 QQQQQQQQQQPFG-HQQQQQQQQQQQQQQQQQHMDYVTELLSK 1430


>GLP2_RAT (Q9Z0W0) Glucagon-like peptide 2 receptor precursor (GLP-2
           receptor) (GLP-2-R) (GLP-2R)
          Length = 550

 Score = 31.6 bits (70), Expect = 6.9
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 216 QASAPVNLESKSKRA*WQPGKIWTVNLVLIKKKQM--MMQKQPWG*WQQYHQKQYQKLN 272
           +A  PV L S+  R  W PG+ +   L+L+  KQ+   + K+    W  Y +K  + L+
Sbjct: 30  EAQGPVPLHSQQMRLLWGPGRPFLALLLLVSIKQVTGSLLKETTQKWANYKEKCLEDLH 88


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.351    0.154    0.514 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,219,342
Number of Sequences: 164201
Number of extensions: 2224131
Number of successful extensions: 8396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8386
Number of HSP's gapped (non-prelim): 10
length of query: 659
length of database: 59,974,054
effective HSP length: 117
effective length of query: 542
effective length of database: 40,762,537
effective search space: 22093295054
effective search space used: 22093295054
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 69 (31.2 bits)