BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141114.8 - phase: 0
(239 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro... 57 5e-08
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem... 57 5e-08
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 54 3e-07
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type... 52 1e-06
YSM6_CAEEL (Q10126) Hypothetical protein F52C9.6 in chromosome III 52 1e-06
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 51 2e-06
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type... 48 2e-05
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem... 47 4e-05
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog 47 5e-05
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains... 40 0.004
POL_HTL1A (P03362) Pol polyprotein [Contains: Reverse transcript... 37 0.042
PO11_NASVI (Q03269) Retrovirus-related Pol polyprotein from type... 37 0.042
RDPO_SCEOB (P19593) Probable reverse transcriptase (EC 2.7.7.49) 36 0.071
DPOL_HPBVM (P31870) P protein [Includes: DNA-directed DNA polyme... 36 0.071
DPOL_HPBV4 (P12933) P protein [Includes: DNA-directed DNA polyme... 36 0.071
POL_HTL1C (P14078) Pol polyprotein [Contains: Reverse transcript... 36 0.093
DPOL_HPBVR (P03157) P protein [Includes: DNA-directed DNA polyme... 35 0.12
POL_BIV27 (P19561) Pol polyprotein [Contains: Protease (EC 3.4.2... 35 0.16
POL_BIV06 (P19560) Pol polyprotein [Contains: Protease (EC 3.4.2... 35 0.16
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type... 35 0.16
>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2)
Length = 1021
Score = 56.6 bits (135), Expect = 5e-08
Identities = 59/200 (29%), Positives = 92/200 (45%), Gaps = 22/200 (11%)
Query: 2 YEGVSTSVRTQDGTTEVFPITIGLHQGSTLSPYLFTLVLDVLTEHIQELAPRCML--FAD 59
+ G +R+ GT EV P+T G QGS P+++ +++DVL +Q L P C L +AD
Sbjct: 610 FSGRRAVIRSSSGTVEV-PVTRGCPQGSISGPFIWDILMDVL---LQRLQPYCQLSAYAD 665
Query: 60 DVVLV--GESR---EEVNGRL----ETWRQALEAYGFRLSRSKTEYMEWNFSGRRSRSTL 110
D++L+ G SR EE +L ETW + G LS SKT M + RR+ +
Sbjct: 666 DLLLLVEGNSRAVLEEKGAQLMSIVETWGAEV---GDCLSTSKTVIMLLKGALRRAPT-- 720
Query: 111 EVKVGDHIIPQVTRFKYLGSFVQNDGEIEADV-SHRIQAGWLKWRRASGVLCDKKVPLKL 169
V+ +P V +YLG V + + S R + + A + D +
Sbjct: 721 -VRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRA 779
Query: 170 KGKFYRTAIRPALLYGTECW 189
+ Y + P +L+G W
Sbjct: 780 RRTIYDGLMAPCVLFGAPVW 799
>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 56.6 bits (135), Expect = 5e-08
Identities = 49/219 (22%), Positives = 98/219 (44%), Gaps = 16/219 (7%)
Query: 16 TEVFPITIGLHQGSTLSPYLFTLVLDVLTEH-----IQELAPRCMLFADDVVLVGESR-- 68
+ + PI G+ QGS L P L+++ + H + E +ADD ++ +S+
Sbjct: 633 SSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSI 692
Query: 69 ----EEVNGRLETWRQALEAYGFRLSRSKTEYMEWNFSGRRSRSTLEVKVGDHIIPQVTR 124
+ L+ ++Q E + R++ K + + R+ S V + +I
Sbjct: 693 LAATSGLQEYLDAFQQWAENWNVRINAEKCANVTF---ANRTGSCPGVSLNGRLIRHHQA 749
Query: 125 FKYLGSFVQNDGEIEADVSHRIQAGWLKWRRASGVLCDK-KVPLKLKGKFYRTAIRPALL 183
+KYLG + +++ QA K R S ++ + K+ L K Y++ + P L
Sbjct: 750 YKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLF 809
Query: 184 YGTECWAVKSQ-HENQVSVTEMRMLRWMSGKTRQDRIRN 221
YG + + + ++ H N++ + + + LR +SG R R+
Sbjct: 810 YGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRD 848
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 54.3 bits (129), Expect = 3e-07
Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 29/199 (14%)
Query: 7 TSVRTQDGTTEVFPITIGLHQGSTLSPYLFTLVLDVLTEHIQE------LAPRC----ML 56
T++ TT I G+ QG LSP LF +VLD L + + + P C +
Sbjct: 68 TNIVVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRLNDEQPGASMTPACKIASLA 127
Query: 57 FADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSK-TEYMEWNFSGR---RSRSTLEV 112
FADD++L+ + +V L T G L+ K SGR RS+ + +
Sbjct: 128 FADDLLLLEDRDIDVPNSLATTCAYFRTRGMTLNPEKCASISAATVSGRSVPRSKPSFTI 187
Query: 113 KVGDHIIP--QVTRFKYLGSFVQNDGEIEADVSHRIQAGWLKWRRASGVLCDKKVPLKLK 170
G +I P + FKYLG + G + V + + WL+ +K PLK
Sbjct: 188 D-GRYIKPLGGINTFKYLGLTFSSTGVAKPTVYNLTR--WLRNL--------EKAPLKPN 236
Query: 171 GKFY--RTAIRPALLYGTE 187
KFY +T + P L YG +
Sbjct: 237 QKFYILKTHLLPRLFYGLQ 255
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
retrotransposable element R2DM [Contains: Protease (EC
3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
Endonuclease]
Length = 1057
Score = 52.4 bits (124), Expect = 1e-06
Identities = 55/199 (27%), Positives = 84/199 (41%), Gaps = 25/199 (12%)
Query: 2 YEGVSTSVRTQDGTTEVFPITIGLHQGSTLSPYLFTLVLDVLTE--------HIQELAPR 53
YEG TS+ ++E F G+ QG LSP LF LV+D L +
Sbjct: 516 YEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGAKVGNAITN 575
Query: 54 CMLFADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSKTEYMEWNFSGRRSRSTLEVK 113
FADD+VL E+R + L+ L G +L+ K + ++ + LE +
Sbjct: 576 AAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQ 635
Query: 114 ---VGDHIIPQVTR---FKYLGSFVQNDGEIEADVSHRIQAGWLKWRRASGVLCDKKVPL 167
VG IP + R +KYLG G + + + I K +R + K PL
Sbjct: 636 SFYVGSSEIPSLKRTDEWKYLGINFTATGRVRCNPAEDIGP---KLQRLT------KAPL 686
Query: 168 KLKGKFY--RTAIRPALLY 184
K + + + RT + P L +
Sbjct: 687 KPQQRLFALRTVLIPQLYH 705
>YSM6_CAEEL (Q10126) Hypothetical protein F52C9.6 in chromosome III
Length = 279
Score = 52.0 bits (123), Expect = 1e-06
Identities = 39/173 (22%), Positives = 70/173 (39%), Gaps = 8/173 (4%)
Query: 57 FADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSKTEYMEWNFSGRRSRSTLEVKVGD 116
FADD+VL+ + L+ Q G ++ KT+ + N S+
Sbjct: 13 FADDIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKVLR-NRLADPSKVYFGSPSST 71
Query: 117 HIIPQVTRFKYLGSFVQNDGEIEADVSHRIQAGWLKW---RRASGVLCDKKVPLKLKGKF 173
+ V + YLG + + ++ R +A W + + + + DKK+ + L
Sbjct: 72 TQLDDVDEYIYLGRQINAHNNLMPEIHRRRRAAWAAFNGSKNTTDSITDKKIRVNL---- 127
Query: 174 YRTAIRPALLYGTECWAVKSQHENQVSVTEMRMLRWMSGKTRQDRIRNDTIRE 226
+ + + PAL YG+E W +V +T + R + G T + D RE
Sbjct: 128 FDSIVLPALTYGSEAWTFNKALSERVRITHASLERRLVGITLTQQRERDLHRE 180
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 51.2 bits (121), Expect = 2e-06
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 24 GLHQGSTLSPYLFTLVLDVLTEHIQELAPRCM--------LFADDVVLVGESREEVNGRL 75
G+ QG LSP LF V+D + + E M +FADD+VL+ E+RE + L
Sbjct: 512 GVRQGDPLSPLLFNCVMDAVLRRLPENTGFLMGAEKIGALVFADDLVLLAETREGLQASL 571
Query: 76 ETWRQALEAYGFRLSRSKTEYMEWNFSGRRSRSTLEV----KVGDHIIPQV---TRFKYL 128
L+ G + K + SG+ + +E VG+ I Q+ ++KYL
Sbjct: 572 SRIEAGLQEQGLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYL 631
Query: 129 GSFVQNDGEIEADVS-----HRIQAGWLKWRRASGVL 160
G + G I+ ++ R+ A LK ++ +L
Sbjct: 632 GVVYNSYGPIQVKINIAGDLQRVTAAPLKPQQRMAIL 668
>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 711
Score = 47.8 bits (112), Expect = 2e-05
Identities = 58/203 (28%), Positives = 88/203 (42%), Gaps = 34/203 (16%)
Query: 6 STSVRTQDGT-TEVFPITIGLHQGSTLSPYLFTLVLDVLTEHIQ----------ELAPRC 54
+T++R G+ T I G+ QG LSP+LF VLD L +Q E
Sbjct: 181 TTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGGTIGEEKIPV 240
Query: 55 MLFADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSKTEYMEWNFSG----RRSRSTL 110
+ FADD++L+ ++ + L T G L+ K+ + SG R++ L
Sbjct: 241 LAFADDLLLLEDNDVLLPTTLATVANFFRLRGMSLNAKKSVSISVAASGGVCIPRTKPFL 300
Query: 111 EVKVGDHIIPQVT----RFKYLGSFVQNDGEIEADVSHRIQAGWLKWRRASGVLCDKKVP 166
V D+++ VT F+YLG F G + V + + WLK C + P
Sbjct: 301 RV---DNVLLPVTDRMQTFRYLGHFFGLSGAAKPTVYN--LSRWLK--------CVEAAP 347
Query: 167 LKLKGK--FYRTAIRPALLYGTE 187
LK + K R + P LLYG +
Sbjct: 348 LKPEQKLSLIREHVVPKLLYGLQ 370
>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 47.0 bits (110), Expect = 4e-05
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 29/258 (11%)
Query: 2 YEGVSTSVRTQDGTTEVFPITIGLHQGSTLSPYLFTL-VLDVLTEH-IQELAPRCML--- 56
+EG SV + V I G+ QGS L P L+++ D+ ++ + LA +L
Sbjct: 619 WEGRKFSVTADGCRSSVKFIEAGVPQGSVLGPTLYSIFTADMPNQNAVTGLAEGEVLIAT 678
Query: 57 FADDVVLVGESR--EEVNGRLETWRQALEAYGFRLSRSKTEYMEWNFSGRRS-RSTLEVK 113
+ADD+ ++ +S E L+ + A + + + + S N + + R V
Sbjct: 679 YADDIAVLTKSTCIVEATDALQEYLDAFQEWAVKWNVSINAGKCANVTFTNAIRDCPGVT 738
Query: 114 VGDHIIPQVTRFKYLGSFVQNDGEIEADV-----SHRIQAGWLKWRRASGVLCDKKVPLK 168
+ ++ +KYLG + + S R + + W A+ K+ L
Sbjct: 739 INGSLLSHTHEYKYLGVILDRSLTFRRHITSLQHSFRTRITKMNWLLAA----RNKLSLD 794
Query: 169 LKGKFYRTAIRPALLYGTECWAVKSQ-HENQVSVTEMRMLRWMSGKTRQDRIRN------ 221
K K Y+ + P L Y + + + ++ H N++ V + +MLR +SG R R+
Sbjct: 795 NKVKIYKCIVAPGLFYAIQVYGIAARTHLNKIRVLQAKMLRKISGAPWYMRTRDIECDLK 854
Query: 222 -----DTIREGRGGIHSR 234
D IRE H R
Sbjct: 855 VPKIGDKIREVAKKYHER 872
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
Length = 1260
Score = 46.6 bits (109), Expect = 5e-05
Identities = 33/129 (25%), Positives = 62/129 (47%), Gaps = 15/129 (11%)
Query: 19 FPITIGLHQGSTLSPYLFTLVLDVLT-----------EHIQELAPRCMLFADD-VVLVGE 66
FP+ G QG LSP LF +V++VL HI + LFADD +V +
Sbjct: 650 FPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAIKGIHIGSEEIKLSLFADDMIVYLEN 709
Query: 67 SREEVNGRLETWRQALEAYGFRLSRSKTEYMEWNFSGRRSRSTLEVKVGDHIIPQVTRFK 126
+R+ LE ++ G++++ K+ + + ++ T++ + ++P+ + K
Sbjct: 710 TRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYT-NNNQAEKTVKDSIPFTVVPK--KMK 766
Query: 127 YLGSFVQND 135
YLG ++ D
Sbjct: 767 YLGVYLTKD 775
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1300
Score = 40.4 bits (93), Expect = 0.004
Identities = 26/106 (24%), Positives = 46/106 (42%), Gaps = 12/106 (11%)
Query: 1 MYEGVSTSVRTQDGTTEVFPITIGLHQGSTLSPYLFTLVLDVLTEHIQELAP-------- 52
+Y +++ E P+ G QG LSPYLF +VL+VL I++
Sbjct: 659 IYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEIKGIQIGK 718
Query: 53 ---RCMLFADD-VVLVGESREEVNGRLETWRQALEAYGFRLSRSKT 94
+ L ADD +V + + + L E G++++ +K+
Sbjct: 719 EEVKISLLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKS 764
>POL_HTL1A (P03362) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 896
Score = 37.0 bits (84), Expect = 0.042
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 25 LHQGSTLSPYLFTLVLDVLTEHIQELAPRCML--FADDVVLVGESREEVNGRLETWRQAL 82
L QG SP LF + L + + I++ P+C + + DD++L S E++ E +L
Sbjct: 153 LPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHEDLLLLSEATMASL 212
Query: 83 EAYGFRLSRSKTE 95
++G +S +KT+
Sbjct: 213 ISHGLPVSENKTQ 225
>PO11_NASVI (Q03269) Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 337
Score = 37.0 bits (84), Expect = 0.042
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 24 GLHQGSTLSPYLFTLVLDVLTEHIQELAPRCMLFADDVVLVGESREEVNGRLETWRQALE 83
G QGS PY++ L ++ L + + + R + +ADD+++V N R+E R A E
Sbjct: 1 GCPQGSISGPYMWNLCMNGLLDRLSAMNERIVAYADDLMIVANG----NSRMEMERMADE 56
Query: 84 A----------YGFRLSRSKTEYM----EWNFSGRRSR 107
G +S KT + + N GRR R
Sbjct: 57 CMRIVYEWGREVGVSISEKKTVCIMLKGKLNVDGRRMR 94
>RDPO_SCEOB (P19593) Probable reverse transcriptase (EC 2.7.7.49)
Length = 608
Score = 36.2 bits (82), Expect = 0.071
Identities = 32/119 (26%), Positives = 49/119 (40%), Gaps = 23/119 (19%)
Query: 20 PITIGLHQGSTLSPYLFTLVLDVLTEHI---------QELAPRCMLFADDVVLVGESREE 70
P T G+ QG +SP + L LD L HI Q +ADD+V++ + E
Sbjct: 241 PTTTGVPQGGIISPLIMNLTLDGLEFHIYKKIQKSSSQSKGNTYCRYADDMVILTTTEET 300
Query: 71 VNGRLETWRQALEAYGFRLSRSKT------------EYMEWNFSG--RRSRSTLEVKVG 115
L ++ L G + +KT E++ + F RR+R L +VG
Sbjct: 301 ALIALPAVKEFLAVRGLEVKLAKTTIKNIINDRNGFEFLSFRFRKVYRRNRKRLTSQVG 359
>DPOL_HPBVM (P31870) P protein [Includes: DNA-directed DNA
polymerase (EC 2.7.7.7); RNA-directed DNA polymerase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 842
Score = 36.2 bits (82), Expect = 0.071
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 20 PITIGLHQ---GSTLSPYLFTLVLDVLTEHIQELAPRCMLFA--DDVVLVGESREEVNGR 74
PI +G + G LSP+L + ++ P C+ F+ DDVVL +S + +
Sbjct: 507 PIILGFRKIPMGGGLSPFLLAQFTSAICSVVRRAFPHCLAFSYMDDVVLGAKSVQHLESL 566
Query: 75 LETWRQALEAYGFRLSRSKTEYMEWNFS 102
+ L + G L+ +KT+ W +S
Sbjct: 567 FTSITNFLLSLGIHLNPNKTK--RWGYS 592
>DPOL_HPBV4 (P12933) P protein [Includes: DNA-directed DNA
polymerase (EC 2.7.7.7); RNA-directed DNA polymerase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 730
Score = 36.2 bits (82), Expect = 0.071
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 20 PITIGLHQ---GSTLSPYLFTLVLDVLTEHIQELAPRCMLFA--DDVVLVGESREEVNGR 74
PI +G + G LSP+L + ++ P C+ F+ DDVVL +S + +
Sbjct: 507 PIILGFRKIPMGGGLSPFLLAQFTSAICSVVRRAFPHCLAFSYMDDVVLGAKSVQHLESL 566
Query: 75 LETWRQALEAYGFRLSRSKTEYMEWNFS 102
+ L + G L+ +KT+ W +S
Sbjct: 567 FTSITNFLLSLGIHLNPNKTK--RWGYS 592
>POL_HTL1C (P14078) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 896
Score = 35.8 bits (81), Expect = 0.093
Identities = 21/73 (28%), Positives = 39/73 (52%), Gaps = 2/73 (2%)
Query: 25 LHQGSTLSPYLFTLVLDVLTEHIQELAPRCML--FADDVVLVGESREEVNGRLETWRQAL 82
L QG SP LF + L + + I++ P+C + + DD++L S ++ E +L
Sbjct: 153 LPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHADLQLLSEATMASL 212
Query: 83 EAYGFRLSRSKTE 95
++G +S +KT+
Sbjct: 213 ISHGLPVSENKTQ 225
>DPOL_HPBVR (P03157) P protein [Includes: DNA-directed DNA
polymerase (EC 2.7.7.7); RNA-directed DNA polymerase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 843
Score = 35.4 bits (80), Expect = 0.12
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 20 PITIGLHQ---GSTLSPYLFTLVLDVLTEHIQELAPRCMLFA--DDVVLVGESREEVNGR 74
PI +G + G LSP+L + ++ P C+ F+ DDVVL +S + +
Sbjct: 507 PIILGFRKIPMGVGLSPFLLAQFTSAICSVVRRAFPHCLAFSYMDDVVLGAKSVQHLESL 566
Query: 75 LETWRQALEAYGFRLSRSKTEYMEWNFS 102
+ L + G L+ +KT+ W +S
Sbjct: 567 FTSITNFLLSLGIHLNPNKTK--RWGYS 592
>POL_BIV27 (P19561) Pol polyprotein [Contains: Protease (EC
3.4.23.-) (P119) (Retropepsin); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT) (P72); Integrase (IN)]
Length = 1056
Score = 35.0 bits (79), Expect = 0.16
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 12 QDGTTEVFPITIGLHQGSTLSPYLFTLVLDVLTEHIQELAPRCMLFAD-DVVLVGESREE 70
++G E F + L QG SP ++ + E+I++ P ML+ D +L+G +R++
Sbjct: 293 REGPIERFQWNV-LPQGWVCSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSNRDD 351
Query: 71 VNGRLETWRQALEAYGFRLSRSKT--EYMEW 99
++ R L +YGF+ K E ++W
Sbjct: 352 HKQIVQEIRDKLGSYGFKTPDEKVQEERVKW 382
>POL_BIV06 (P19560) Pol polyprotein [Contains: Protease (EC
3.4.23.-) (P119) (Retropepsin); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT) (P72); Integrase (IN)]
Length = 1056
Score = 35.0 bits (79), Expect = 0.16
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 12 QDGTTEVFPITIGLHQGSTLSPYLFTLVLDVLTEHIQELAPRCMLFAD-DVVLVGESREE 70
++G E F + L QG SP ++ + E+I++ P ML+ D +L+G +R++
Sbjct: 293 REGPIERFQWNV-LPQGWVCSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSNRDD 351
Query: 71 VNGRLETWRQALEAYGFRLSRSKT--EYMEW 99
++ R L +YGF+ K E ++W
Sbjct: 352 HKQIVQEIRDKLGSYGFKTPDEKVQEERVKW 382
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 869
Score = 35.0 bits (79), Expect = 0.16
Identities = 28/115 (24%), Positives = 52/115 (44%), Gaps = 9/115 (7%)
Query: 1 MYEGVSTSVRTQDGTTEVFPITIGLHQGSTLSPYLFTLVLDVLTE--------HIQELAP 52
MY V T ++ + G E+ I G++QG LS LFTL + I ++
Sbjct: 330 MYNNVITEMQFE-GKCELASILAGVYQGDPLSGPLFTLAYEKALRALNNEGRFDIADVRV 388
Query: 53 RCMLFADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSKTEYMEWNFSGRRSR 107
++DD +L+ + + L+ + + L G R++ K++ + SGR +
Sbjct: 389 NASAYSDDGLLLAMTVIGLQHNLDKFGETLAKIGLRINSRKSKTVSLVPSGREKK 443
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,570,698
Number of Sequences: 164201
Number of extensions: 1097648
Number of successful extensions: 2432
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2408
Number of HSP's gapped (non-prelim): 56
length of query: 239
length of database: 59,974,054
effective HSP length: 107
effective length of query: 132
effective length of database: 42,404,547
effective search space: 5597400204
effective search space used: 5597400204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC141114.8