BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.8 - phase: 0 /pseudo
(779 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 226 2e-58
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 226 2e-58
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 226 2e-58
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 95 6e-19
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 91 1e-17
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 77 2e-13
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 77 2e-13
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 74 1e-12
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 65 7e-10
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 63 3e-09
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 62 6e-09
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 62 8e-09
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 61 1e-08
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 60 2e-08
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 60 2e-08
POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse transcript... 60 2e-08
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 58 8e-08
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 58 8e-08
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 58 8e-08
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 58 8e-08
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 226 bits (576), Expect = 2e-58
Identities = 136/457 (29%), Positives = 238/457 (51%), Gaps = 23/457 (5%)
Query: 252 ANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSIKE 311
AN +ADALSR +V E E + + + + + + + I +F +
Sbjct: 822 ANHIADALSR--------IVDETEPIPKDSEDNSINF-------VNQISITDDFKNQVVT 866
Query: 312 AQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSLSI 371
+D K ++LL D+ + + ++ D ++ + +I +P++ ++ + I+++ H I
Sbjct: 867 EYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLI 926
Query: 372 HPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDS 431
HPG + + + + F G+++ + ++V +C CQ +K + KP G + P+ E W+S
Sbjct: 927 HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986
Query: 432 ISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPS 491
+SMDF+T+LP + G +A++V+VDR +K A +P S Q A ++ + ++ G P
Sbjct: 987 LSMDFITALPESS-GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPK 1045
Query: 492 SIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGG 551
I++D D FTS+ WK ++ S Y PQTDGQ+ERT Q++E LLR
Sbjct: 1046 EIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN 1105
Query: 552 TWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEK 611
TW H+ L++ +YNN+ HS+ M FE ++ R L E E Q+T +
Sbjct: 1106 TWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQV 1163
Query: 612 VQMIREKMKASQSRQKSYHDKRRKDL-EFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIG 670
Q ++E + + + K Y D + +++ EF+ GD L + T G KS KL P F G
Sbjct: 1164 FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD---LVMVKRTKTGFLHKSNKLAPSFAG 1220
Query: 671 PYHILERVGTVAYRVGLPPHLSNL-HNVFHVSQLRKY 706
P+++L++ G Y + LP + ++ + FHVS L KY
Sbjct: 1221 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 226 bits (576), Expect = 2e-58
Identities = 136/457 (29%), Positives = 238/457 (51%), Gaps = 23/457 (5%)
Query: 252 ANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSIKE 311
AN +ADALSR +V E E + + + + + + + I +F +
Sbjct: 822 ANHIADALSR--------IVDETEPIPKDSEDNSINF-------VNQISITDDFKNQVVT 866
Query: 312 AQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSLSI 371
+D K ++LL D+ + + ++ D ++ + +I +P++ ++ + I+++ H I
Sbjct: 867 EYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLI 926
Query: 372 HPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDS 431
HPG + + + + F G+++ + ++V +C CQ +K + KP G + P+ E W+S
Sbjct: 927 HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986
Query: 432 ISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPS 491
+SMDF+T+LP + G +A++V+VDR +K A +P S Q A ++ + ++ G P
Sbjct: 987 LSMDFITALPESS-GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPK 1045
Query: 492 SIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGG 551
I++D D FTS+ WK ++ S Y PQTDGQ+ERT Q++E LLR
Sbjct: 1046 EIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN 1105
Query: 552 TWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEK 611
TW H+ L++ +YNN+ HS+ M FE ++ R L E E Q+T +
Sbjct: 1106 TWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQV 1163
Query: 612 VQMIREKMKASQSRQKSYHDKRRKDL-EFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIG 670
Q ++E + + + K Y D + +++ EF+ GD L + T G KS KL P F G
Sbjct: 1164 FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD---LVMVKRTKTGFLHKSNKLAPSFAG 1220
Query: 671 PYHILERVGTVAYRVGLPPHLSNL-HNVFHVSQLRKY 706
P+++L++ G Y + LP + ++ + FHVS L KY
Sbjct: 1221 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 226 bits (576), Expect = 2e-58
Identities = 136/457 (29%), Positives = 238/457 (51%), Gaps = 23/457 (5%)
Query: 252 ANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSIKE 311
AN +ADALSR +V E E + + + + + + + I +F +
Sbjct: 822 ANHIADALSR--------IVDETEPIPKDSEDNSINF-------VNQISITDDFKNQVVT 866
Query: 312 AQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSLSI 371
+D K ++LL D+ + + ++ D ++ + +I +P++ ++ + I+++ H I
Sbjct: 867 EYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLI 926
Query: 372 HPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDS 431
HPG + + + + F G+++ + ++V +C CQ +K + KP G + P+ E W+S
Sbjct: 927 HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986
Query: 432 ISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPS 491
+SMDF+T+LP + G +A++V+VDR +K A +P S Q A ++ + ++ G P
Sbjct: 987 LSMDFITALPESS-GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPK 1045
Query: 492 SIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGG 551
I++D D FTS+ WK ++ S Y PQTDGQ+ERT Q++E LLR
Sbjct: 1046 EIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPN 1105
Query: 552 TWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEK 611
TW H+ L++ +YNN+ HS+ M FE ++ R L E E Q+T +
Sbjct: 1106 TWVDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQV 1163
Query: 612 VQMIREKMKASQSRQKSYHDKRRKDL-EFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIG 670
Q ++E + + + K Y D + +++ EF+ GD L + T G KS KL P F G
Sbjct: 1164 FQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGD---LVMVKRTKTGFLHKSNKLAPSFAG 1220
Query: 671 PYHILERVGTVAYRVGLPPHLSNL-HNVFHVSQLRKY 706
P+++L++ G Y + LP + ++ + FHVS L KY
Sbjct: 1221 PFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 95.1 bits (235), Expect = 6e-19
Identities = 79/297 (26%), Positives = 140/297 (46%), Gaps = 25/297 (8%)
Query: 340 GVLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFV 399
G L R+ +P + ++K++L++ H HPG +M + + GL D+ V
Sbjct: 768 GCLLLDDRVIVP--KSLQKIVLKQLHEG----HPGIVQMKQKARSFVFWRGLDSDIENMV 821
Query: 400 YSCLVCQE-SKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLT 458
C CQE SK+ P P V E W I +DF P + V+VD T
Sbjct: 822 RHCNNCQENSKMPRVVPLN---PWPVPEAPWKRIHIDFAG-----PLNGCYLLVVVDAKT 873
Query: 459 KSAHFLPINISFPVAQLAEI-YIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKL 517
K A + ++ ++ + I ++EI +HG P +I+SD + TS + + ++ G +
Sbjct: 874 KYAE---VKLTRSISAVTTIDLLEEIFSIHGYPETIISDNGTQLTSHLFAQMCQSHGIEH 930
Query: 518 RLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSI-GMAS 576
+ S+ Y+P+++G +ER + +L+ + + +G L +Y N+ HS++ G
Sbjct: 931 KTSAVYYPRSNGAAERFVDTLKRGI-AKIKGEGSVNQQILNKFLISYRNTPHSALNGSTP 989
Query: 577 FEALYGRRCRTPLCWFESDERVVLGPEIV--QQTTEKVQMIRE--KMKASQSRQKSY 629
E +GR+ RT + +RV+ P++ QQ + +R + KA Q QK Y
Sbjct: 990 AECHFGRKIRTTMSLLMPTDRVLKVPKLTQYQQNMKHHYELRNGARAKAFQVNQKVY 1046
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 90.9 bits (224), Expect = 1e-17
Identities = 76/335 (22%), Positives = 151/335 (44%), Gaps = 19/335 (5%)
Query: 352 DNEEIKKMILEESHRSSLSI-HPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKV 410
+NE+ K+ IL H + H G TK +K+ ++ + + + ++V C CQ++K
Sbjct: 888 NNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKT 947
Query: 411 EHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISF 470
M + + E +D + +D + LP + G++ ++ LTK +PI +
Sbjct: 948 TKHTKTPMTIT-ETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPI-ANK 1005
Query: 471 PVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQ 530
+A+ + + +G + ++D + + L + L K S+A+H QT G
Sbjct: 1006 SAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGV 1065
Query: 531 SERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLC 590
ER+ ++L + +R + WD L + +N + +E ++GR P
Sbjct: 1066 VERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKH 1125
Query: 591 W--FESDERVVLGPEIVQQTTEKVQM----IREKMKASQSRQKSYHDKRRKDLEFKEGDH 644
+ S E + + +++ ++++ R+ ++A + + K +D + KD+E + GD
Sbjct: 1126 FNKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDK 1185
Query: 645 MFLRVTPMTGVGRALKSKKLTPKFIGPYHILERVG 679
+ LR VG KL K+ GPY I E +G
Sbjct: 1186 VLLR----NEVGH-----KLDFKYTGPYKI-ESIG 1210
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 77.0 bits (188), Expect = 2e-13
Identities = 59/248 (23%), Positives = 107/248 (42%), Gaps = 9/248 (3%)
Query: 341 VLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVY 400
V R G+ IP + ++IL+ + + H G + + +W L++DV + +
Sbjct: 803 VTRPNGKRIIPPKSDRPQIILQAHNIA----HTGRDSTFLKVSSKYWWPNLRKDVVKVIR 858
Query: 401 SCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKS 460
C C + ++ P ++ +D +D++ LP + G + V+VD +T
Sbjct: 859 QCKQCLVTNAATLAAPPILRPERPVK-PFDKFFIDYIGPLPPS-NGYLHVLVVVDSMTGF 916
Query: 461 AHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLS 520
P A + + + + VP I SD+ FTS + + G +L S
Sbjct: 917 VWLYPTKAPSTSATVKALNMLTSI---AVPKVIHSDQGAAFTSATFADWAKNKGIQLEFS 973
Query: 521 SAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEAL 580
+ YHPQ+ G+ ER ++ LL ++ + W LP+++ NNSY S + L
Sbjct: 974 TPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLL 1033
Query: 581 YGRRCRTP 588
+G TP
Sbjct: 1034 FGIDSNTP 1041
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 76.6 bits (187), Expect = 2e-13
Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 8/232 (3%)
Query: 357 KKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPA 416
++ I+ +H + H G + + +W L++DV + + C C + +
Sbjct: 816 REKIISTAHNIA---HTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSP 872
Query: 417 GMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLA 476
++ P+ L+ +D +D++ LP + G + V+VD +T P A +
Sbjct: 873 PILRPVKPLK-PFDKFYIDYIGPLPPS-NGYLHVLVVVDSMTGFVWLYPTKAPSTSATVK 930
Query: 477 EIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQ 536
+ + + +P + SD+ FTS + + G +L S+ YHPQ+ G+ ER
Sbjct: 931 ALNMLTSI---AIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNS 987
Query: 537 SLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTP 588
++ LL ++ + W LP+++ NNSY S + L+G TP
Sbjct: 988 DIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTP 1039
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 73.9 bits (180), Expect = 1e-12
Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 9/248 (3%)
Query: 341 VLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVY 400
V R G IP + +K++L+ + + H G + ++W +++DV + +
Sbjct: 593 VSRPEGVKIIPPQSDRQKIVLQAHNLA----HTGREATLLKIANLYWWPNMRKDVVKQLG 648
Query: 401 SCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKS 460
C C + + K +G ++ D + +D +D++ LP + +G + V+VD +T
Sbjct: 649 RCQQCLITNASN-KASGPILRPDRPQKPFDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF 706
Query: 461 AHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLS 520
P A + + + + +P I SD+ FTS + + G L S
Sbjct: 707 TWLYPTKAPSTSATVKSLNVLTSI---AIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFS 763
Query: 521 SAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEAL 580
+ YHPQ+ + ER ++ LL ++ + W LP+++ NN+Y + + L
Sbjct: 764 TPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLL 823
Query: 581 YGRRCRTP 588
+G TP
Sbjct: 824 FGIDSNTP 831
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 65.1 bits (157), Expect = 7e-10
Identities = 92/347 (26%), Positives = 147/347 (41%), Gaps = 35/347 (10%)
Query: 339 QGVLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSG----LKRD 394
+G F+G+ +PD + +L+ HR + H G KM L + G L RD
Sbjct: 824 KGYWVFQGKPVMPDQFVFE--LLDSLHRLT---HLGYQKMKALLDR---GESPYYMLNRD 875
Query: 395 -VAQFVY-SCLVCQESKVEHQK-PAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIW 451
Q+V SC VC + K AG+ V W+ +DF P G +
Sbjct: 876 KTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGSHWE---IDFTEVKPGL-YGYKYLL 931
Query: 452 VIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQE 511
V VD + P +++ ++EI G+P + SD P FTS+ +S+ +
Sbjct: 932 VFVDTFSGWVEAFPTKRE-TARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVAD 990
Query: 512 ALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQG-GTWDSHLPLIEFTYNNSYHS 570
LG +L AY PQ+ GQ ER +++++ L L G W LPL + N+
Sbjct: 991 LLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNT-PG 1049
Query: 571 SIGMASFEALYGRRCRTPLCWF-ESDERVVLGPEIVQQTTEKVQMI-REKMKASQSRQKS 628
G+ +E LYG PL F + D + +Q + +Q + RE K +
Sbjct: 1050 PHGLTPYEILYG--APPPLVNFHDPDMSELTNSPSLQAHLQALQTVQREIWKPLAEAYRD 1107
Query: 629 YHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHIL 675
D+ F+ GD +++ R ++K L P++ GPY +L
Sbjct: 1108 QLDQPVIPHPFRIGDSVWV---------RRHQTKNLEPRWKGPYTVL 1145
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 63.2 bits (152), Expect = 3e-09
Identities = 90/347 (25%), Positives = 142/347 (39%), Gaps = 35/347 (10%)
Query: 339 QGVLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSG----LKRD 394
QG F+G+ +PD + +L+ HR + H G KM L + G L RD
Sbjct: 209 QGYWVFQGKPVMPDQFVFE--LLDSLHRLT---HLGYQKMKALLDR---GESPYYMLNRD 260
Query: 395 -VAQFVY-SCLVCQESKVEHQK-PAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIW 451
Q+V SC VC + K AG+ V W+ +DF P G +
Sbjct: 261 KTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGTHWE---IDFTEVKPGL-YGYKYLL 316
Query: 452 VIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQE 511
V VD + P ++ ++EI G+P + +D P F S+ +S+ +
Sbjct: 317 VFVDTFSGWVEAFPTKHETAKIVTKKL-LEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAK 375
Query: 512 ALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQG-GTWDSHLPLIEFTYNNSYHS 570
LG +L AY PQ+ GQ ER +++++ L L G W LPL + N+
Sbjct: 376 LLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT-PG 434
Query: 571 SIGMASFEALYGRRCRTPLCWFESDE--RVVLGPEIVQQTTEKVQMIREKMKASQSRQKS 628
G+ +E LYG PL F E + P + + RE K + +
Sbjct: 435 PHGLTPYEILYG--APPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAAYQD 492
Query: 629 YHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHIL 675
D+ F+ GD +++ R ++K L P++ GPY +L
Sbjct: 493 QLDQPVIPHPFRVGDTVWV---------RRHQTKNLEPRWKGPYTVL 530
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 62.0 bits (149), Expect = 6e-09
Identities = 94/443 (21%), Positives = 179/443 (40%), Gaps = 27/443 (6%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRD--MSLVCEWTPQSVKLGMLKIDSEFLKS 308
KAN VADALSR + + + + L + + + + S L LK + E K
Sbjct: 1353 KANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLKGEDEGWKE 1412
Query: 309 IKEA-QRDDVKFVDLLVARDQTEDIDFKIDDQGVLRF-----RGRICIPDNEEIKKMILE 362
+ A + K +V + +++ GVL+ + R +P E+I+ +L+
Sbjct: 1413 VIAALEGGKTKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVVP--EKIRTPLLK 1470
Query: 363 ESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPL 422
E H L+ H G KM+ + + F+ ++ V V +C C + +H K + P
Sbjct: 1471 ELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN-DHSKLTSSLTPY 1529
Query: 423 DVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKE 482
+ + + ++ D + + + +G+ I I+D TK +PI L +
Sbjct: 1530 R-MTFPLEIVACDLM-DVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERW 1587
Query: 483 IVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLL 542
+ +P +++D+ F + + L + + Y+ + +G ER +++ ++
Sbjct: 1588 AIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIM 1647
Query: 543 RICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLG- 601
+ WD + + YNN H + G ++GR PL ++ V +
Sbjct: 1648 KKKTAVP-MEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPL-EMSGEDAVGINY 1705
Query: 602 ------PEIVQQTTEKVQMI-REKMKASQSRQKSYHDKR--RKDLEFKEGDHMFLRVTPM 652
++ Q KVQ I +E Q KS D++ K F + L P
Sbjct: 1706 ADMDEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQKYASKKHRFPQPGSRVLLEIPS 1765
Query: 653 TGVGRALKSKKLTPKFIGPYHIL 675
+G + KL K+ GPY ++
Sbjct: 1766 EKLG--AQCPKLVNKWSGPYRVI 1786
Score = 33.9 bits (76), Expect = 1.7
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 17/155 (10%)
Query: 593 ESDERVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPM 652
E E ++ +I+ +TT K++ + E+ DKR+K+ +F+E D
Sbjct: 130 EKSEELMQKSQILVETTLKLKAVEEE-----------RDKRKKEEQFREADARSNNYARK 178
Query: 653 TGVGRALKSKKLTPKFIGPYHIL---ERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPD 709
+ ++ K I R+ T A R+G SN+ N +R+Y +
Sbjct: 179 GEISSNIEQKNHQNIQIMDTRCTTSSSRMNTPAQRIGENLSTSNVGNNVVRETVREYCEE 238
Query: 710 PSHVIQSDDVQVRDNLTVE---TLPLRIDDRKVKT 741
+++ +V D++ E T +R D +V+T
Sbjct: 239 TGEILEDFEVNQNDSVLTERNVTGSVRNGDSQVQT 273
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 61.6 bits (148), Expect = 8e-09
Identities = 89/347 (25%), Positives = 142/347 (40%), Gaps = 35/347 (10%)
Query: 339 QGVLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSG----LKRD 394
+G F+G+ +PD + +L+ HR + H G KM L + G L RD
Sbjct: 824 KGYWVFQGKPVMPDQFVFE--LLDSLHRLT---HLGYQKMKALLDR---GESPYYMLNRD 875
Query: 395 -VAQFVY-SCLVCQESKVEHQK-PAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIW 451
Q+V SC VC + K AG+ V W+ +DF P G +
Sbjct: 876 KTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGTHWE---IDFTEVKPGL-YGYKYLL 931
Query: 452 VIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQE 511
V VD + P ++ ++EI G+P + +D P F S+ +S+ +
Sbjct: 932 VFVDTFSGWVEAFPTKHETAKIVTKKL-LEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAK 990
Query: 512 ALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQG-GTWDSHLPLIEFTYNNSYHS 570
LG +L AY PQ+ GQ ER +++++ L L G W LPL + N+
Sbjct: 991 LLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT-PG 1049
Query: 571 SIGMASFEALYGRRCRTPLCWFESDE--RVVLGPEIVQQTTEKVQMIREKMKASQSRQKS 628
G+ +E LYG PL F E + P + + RE K + +
Sbjct: 1050 PHGLTPYEILYG--APPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAAYQD 1107
Query: 629 YHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHIL 675
D+ F+ GD +++ R ++K L P++ GPY +L
Sbjct: 1108 QLDQPVIPHPFRVGDTVWV---------RRHQTKNLEPRWKGPYTVL 1145
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 61.2 bits (147), Expect = 1e-08
Identities = 92/347 (26%), Positives = 147/347 (41%), Gaps = 36/347 (10%)
Query: 339 QGVLRFRGRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSG----LKRD 394
+G F+G+ +PD + +L+ HR + H G KM L + G L RD
Sbjct: 472 KGYWVFQGKPVMPDQFVFE--LLDSLHRLT---HLGYQKMKALLDR---GESPYYMLNRD 523
Query: 395 -VAQFVY-SCLVCQESKVEHQK-PAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIW 451
Q+V SC VC + K AG+ V W+ +DF P G +
Sbjct: 524 KTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGSHWE---IDFTEVKPGL-YGYKYLL 579
Query: 452 VIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQE 511
V VD + P +++ ++EI G+P + SD P FTS+ +S+ +
Sbjct: 580 VFVDTFSGWVEAFPTKRE-TARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVAD 638
Query: 512 ALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQG-GTWDSHLPLIEFTYNNSYHS 570
LG +L AY PQ+ GQ ER +++++ L L G W LPL + N+
Sbjct: 639 LLGID-KLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNT-PG 696
Query: 571 SIGMASFEALYGRRCRTPLCWF-ESDERVVLGPEIVQQTTEKVQMI-REKMKASQSRQKS 628
G+ +E LYG PL F + D + +Q + +Q + RE K +
Sbjct: 697 PHGLTPYEILYG--APPPLVNFHDPDMSELTNSPSLQAHLQALQTVQREIWKPLAEAYRD 754
Query: 629 YHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHIL 675
D+ F+ GD +++ R ++K L P++ GPY +L
Sbjct: 755 QLDQPVIPHPFRIGDSVWV---------RRHQTKNLEPRWKGPYTVL 792
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 60.5 bits (145), Expect = 2e-08
Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 36/283 (12%)
Query: 446 GSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRF 505
G+ + V +D + P + +I ++EI+ G+P + SD P F ++
Sbjct: 893 GNKYLLVFIDTFSGWVEAFPTKTETALIVCKKI-LEEILPRFGIPKVLGSDNGPAFVAQV 951
Query: 506 WKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGG-TWDSHLPLIEFTY 564
+ L LG +L AY PQ+ GQ ER +++++ L LE GG W + LPL
Sbjct: 952 SQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRA 1011
Query: 565 NNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTEKVQMIREKMKASQS 624
N+ G+ +E LYG P ES E LGP+ + ++ +KA +
Sbjct: 1012 RNT-PGRFGLTPYEILYG----GPPPILESGE--TLGPD-----DRFLPVLFTHLKALEI 1059
Query: 625 RQKSYHDKRRKDLE---------FKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHIL 675
+ D+ ++ + F+ GD + + R + L P++ GPY +L
Sbjct: 1060 VRTQIWDQIKEVYKPGTVTIPHPFQVGDQVLV---------RRHRPSSLEPRWKGPYLVL 1110
Query: 676 ERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDD 718
T G+ + + H+ PD S ++ D
Sbjct: 1111 LTTPTAVKVDGIAAWV----HASHLKPAPPSAPDESWELEKTD 1149
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 60.5 bits (145), Expect = 2e-08
Identities = 71/285 (24%), Positives = 118/285 (40%), Gaps = 22/285 (7%)
Query: 394 DVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVI 453
+VA+ +C+ SK + + AG V L W+ +DF P G + V
Sbjct: 89 EVAESCQACVQVNASKTKIR--AGTRVRGHRLGTHWE---IDFTEVKPGL-YGYKYLLVF 142
Query: 454 VDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEAL 513
VD + P ++ ++EI G+P + +D P F S+ +S+ + L
Sbjct: 143 VDTFSGWVEAFPTKHETAKIVTKKL-LEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLL 201
Query: 514 GSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQG-GTWDSHLPLIEFTYNNSYHSSI 572
G +L AY PQ+ GQ ER +++++ L L G W LPL + N+
Sbjct: 202 GIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT-PGPH 260
Query: 573 GMASFEALYGRRCRTPLCWFESDE--RVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYH 630
G+ +E LYG PL F E + P + + RE K + +
Sbjct: 261 GLTPYEILYG--APPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQL 318
Query: 631 DKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIGPYHIL 675
D+ F+ GD +++ R ++K L P++ GPY +L
Sbjct: 319 DQPVIPHPFRVGDTVWV---------RRHQTKNLEPRWKGPYTVL 354
>POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 473
Score = 60.1 bits (144), Expect = 2e-08
Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 20/243 (8%)
Query: 346 GRICIPDNEEIKKMILEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVC 405
GR+ +P + + +LE++HR++ H G +K+ ++K + G+ R C+ C
Sbjct: 111 GRLLLP--RAVGRKVLEQTHRAT---HLGESKLTELVRKHYPICGIYRAARDITTRCVAC 165
Query: 406 QE-----SKVEHQKPAGMMVPLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKS 460
+ + VE + + W+ D T + G + V+VD +
Sbjct: 166 AQVNPRAAPVEKGLNSRIRGAAPGEHWEVD------FTEMITAKGGYKYLLVLVDTFSGW 219
Query: 461 AHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLS 520
P + + I +I+ G+P I SD P F ++ + L EAL +L
Sbjct: 220 VEAYPAKRETSQVVIKHL-ILDIIPRFGLPVQIGSDNGPAFVAKVTQQLCEALNVSWKLH 278
Query: 521 SAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIE-FTYNNSYHSSIGMASFEA 579
AY PQ+ GQ ER ++L+ I LE LP F Y G++ FE
Sbjct: 279 CAYRPQSSGQVERMNRTLKK--AIAKLEDRDRRGLGLPPPSGFAPGTVYPGREGLSPFEI 336
Query: 580 LYG 582
LYG
Sbjct: 337 LYG 339
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 58.2 bits (139), Expect = 8e-08
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%)
Query: 480 IKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLE 539
++EI G+P + +D P F S+ +++ + LG +L AY PQ+ GQ ER ++++
Sbjct: 959 LEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIK 1018
Query: 540 DLLRICVLEQGG-TWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDE-- 596
+ L L G W LPL + N+ G+ +E LYG PL F +
Sbjct: 1019 ETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMT 1075
Query: 597 RVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVG 656
RV P + + E + + + D+ ++ GD +++
Sbjct: 1076 RVTNSPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPYRVGDTVWV--------- 1126
Query: 657 RALKSKKLTPKFIGPYHIL 675
R ++K L P++ GPY +L
Sbjct: 1127 RRHQTKNLEPRWKGPYTVL 1145
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 58.2 bits (139), Expect = 8e-08
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%)
Query: 480 IKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLE 539
++EI G+P + +D P F S+ +++ + LG +L AY PQ+ GQ ER ++++
Sbjct: 964 LEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIK 1023
Query: 540 DLLRICVLEQGG-TWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDE-- 596
+ L L G W LPL + N+ G+ +E LYG PL F +
Sbjct: 1024 ETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMA 1080
Query: 597 RVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVG 656
+V P + + E + + + D+ F+ GD +++
Sbjct: 1081 KVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWV--------- 1131
Query: 657 RALKSKKLTPKFIGPYHIL 675
R ++K L P++ GPY +L
Sbjct: 1132 RRHQTKNLEPRWKGPYTVL 1150
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 58.2 bits (139), Expect = 8e-08
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%)
Query: 480 IKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLE 539
++EI G+P + +D P F S+ +++ + LG +L AY PQ+ GQ ER ++++
Sbjct: 964 LEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIK 1023
Query: 540 DLLRICVLEQGG-TWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDE-- 596
+ L L G W LPL + N+ G+ +E LYG PL F +
Sbjct: 1024 ETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMA 1080
Query: 597 RVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVG 656
+V P + + E + + + D+ F+ GD +++
Sbjct: 1081 KVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWV--------- 1131
Query: 657 RALKSKKLTPKFIGPYHIL 675
R ++K L P++ GPY +L
Sbjct: 1132 RRHQTKNLEPRWKGPYTVL 1150
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 58.2 bits (139), Expect = 8e-08
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%)
Query: 480 IKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLE 539
++EI G+P + +D P F S+ +++ + LG +L AY PQ+ GQ ER ++++
Sbjct: 964 LEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIK 1023
Query: 540 DLLRICVLEQGG-TWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDE-- 596
+ L L G W LPL + N+ G+ +E LYG PL F +
Sbjct: 1024 ETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMA 1080
Query: 597 RVVLGPEIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVG 656
+V P + + E + + + D+ F+ GD +++
Sbjct: 1081 KVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWV--------- 1131
Query: 657 RALKSKKLTPKFIGPYHIL 675
R ++K L P++ GPY +L
Sbjct: 1132 RRHQTKNLEPRWKGPYTVL 1150
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.336 0.146 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,855,533
Number of Sequences: 164201
Number of extensions: 3318736
Number of successful extensions: 12537
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 12463
Number of HSP's gapped (non-prelim): 65
length of query: 779
length of database: 59,974,054
effective HSP length: 118
effective length of query: 661
effective length of database: 40,598,336
effective search space: 26835500096
effective search space used: 26835500096
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC141111.8