BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.5 - phase: 0 /pseudo
(1478 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 141 2e-32
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 140 3e-32
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 139 4e-32
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 138 1e-31
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 137 2e-31
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 137 2e-31
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 136 5e-31
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 136 5e-31
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 134 2e-30
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 132 9e-30
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 130 3e-29
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 127 2e-28
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 124 1e-27
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 122 6e-27
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 122 9e-27
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 122 9e-27
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 122 9e-27
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 112 1e-23
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 106 5e-22
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 99 7e-20
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 141 bits (355), Expect = 2e-32
Identities = 65/166 (39%), Positives = 109/166 (65%), Gaps = 5/166 (3%)
Query: 509 PVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSM-----RLCI 563
P+ Y ++ + +++ Q++++L + +R S SP+ +P +V KK + R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265
Query: 564 DYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRY 623
DYR+LN++TI +RYP+P +D+++ +L + F+ IDL G+HQI++ +E + KTAFST+
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325
Query: 624 GHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYS 669
GHYEY MPFG+ NAP F MN I L++ +V++DDI+I+S
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFS 371
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 140 bits (353), Expect = 3e-32
Identities = 61/112 (54%), Positives = 85/112 (75%)
Query: 558 SMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKT 617
S+R+CIDYR L KVTIKN+YP+PR+DDL D+L A F+K+DLRSGY Q+++ D KT
Sbjct: 5 SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64
Query: 618 AFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYS 669
TRYG +E++VMPFG+TNA F MN + + +LD FVVV++DD+++Y+
Sbjct: 65 TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYT 116
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 139 bits (351), Expect = 4e-32
Identities = 70/196 (35%), Positives = 116/196 (58%)
Query: 476 VVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEK 535
V+ F +VF ++ E I+L G +P+ P + + +++K ++ +L +
Sbjct: 909 VIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQ 968
Query: 536 KFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVF 595
K +R S SPW +PV+LVKKKDGS+R+CIDYR++NKV N +PLP I+ + L G K++
Sbjct: 969 KVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLY 1028
Query: 596 SKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLD 655
+ D+ +G+ QI + ++ + TAF+ +E+ V+PFG+ +P +F M I L
Sbjct: 1029 TVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLG 1088
Query: 656 RFVVVFIDDILIYSKD 671
V++DD+LI SKD
Sbjct: 1089 VCAFVYVDDLLIASKD 1104
Score = 42.0 bits (97), Expect = 0.012
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 230 PKKKDAPAEITCFNCGEKGHKSNVCPEEIK-----KCVRCGKKGHIVADC-KRNDIVCFN 283
P+K P++ C +C ++G C ++ K KC C + G +A C K + CF
Sbjct: 535 PQKHQNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFR 593
Query: 284 FNEEGHIGSQCKQPKKSPTT 303
NE GHI C PKK+ T
Sbjct: 594 CNEMGHIAWNC--PKKNENT 611
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 138 bits (348), Expect = 1e-31
Identities = 63/151 (41%), Positives = 105/151 (68%), Gaps = 5/151 (3%)
Query: 524 KLKKQLEDLLEKKFVRPSVSPWGAPVLLV-KKKDGS----MRLCIDYRQLNKVTIKNRYP 578
+++ Q++D+L + +R S SP+ +P+ +V KK+D S R+ IDYR+LN++T+ +R+P
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281
Query: 579 LPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNA 638
+P +D+++ +L F+ IDL G+HQI++ E + KTAFST++GHYEY MPFG+ NA
Sbjct: 282 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 341
Query: 639 PGVFMEYMNRIFHAFLDRFVVVFIDDILIYS 669
P F MN I L++ +V++DDI+++S
Sbjct: 342 PATFQRCMNDILRPLLNKHCLVYLDDIIVFS 372
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 137 bits (346), Expect = 2e-31
Identities = 106/382 (27%), Positives = 186/382 (47%), Gaps = 52/382 (13%)
Query: 332 LVAIIDTGATHCFIAFDCVSALGLDLFDMNGE--MVVETPAKGLVTTSLVCLRCLLSMFG 389
L +DTGA+ C + + + +N E ++V+ +T S VC L + G
Sbjct: 40 LHCFVDTGASLCIASKFVIP----EEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAG 95
Query: 390 RDFEMDLVCLPLSGMDVILGMNWLEYNH------------------VHINYFTKSV---- 427
F++ V SG+D I+G N+ + VHI T++V
Sbjct: 96 EIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHITKLTRAVRVGI 155
Query: 428 --YFSSVEEESGAEF-----LSTKQLKQ-MERDGILMYPLMAS------LSFENQAVIDK 473
+ S+++ S + +ST +++ +E IL S Q + +
Sbjct: 156 EGFLESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEEL 215
Query: 474 LQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLL 533
L+ VC + P++ ++ ++ SI L +K + + P + S + + KQ+++LL
Sbjct: 216 LEKVCSENPLDPNKT-----KQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELL 270
Query: 534 EKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 589
+ K ++PS SP AP LV +K+ G R+ ++Y+ +NK TI + Y LP D+L+ +
Sbjct: 271 DLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLI 330
Query: 590 VGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRI 649
G K+FS D +SG+ Q+ + E TAF+ GHYE+ V+PFG+ AP +F +M+
Sbjct: 331 RGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEA 390
Query: 650 FHAFLDRFVVVFIDDILIYSKD 671
F F +F V++DDIL++S +
Sbjct: 391 FRVF-RKFCCVYVDDILVFSNN 411
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 137 bits (346), Expect = 2e-31
Identities = 75/229 (32%), Positives = 134/229 (57%), Gaps = 9/229 (3%)
Query: 449 MERDGILMYPLMASLSFEN-QAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGT 507
+ R I + PL+A+ + Q +++ L + +FP +F + + +E V+ I
Sbjct: 65 LARASINVNPLLAAEHPDGTQEILNSL--LGEFPRIFEPPLSGMSVETAVKAEIRTNT-Q 121
Query: 508 KPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKK-----DGSMRLC 562
P+ Y + ++++Q+++LL+ +RPS SP+ +P+ +V KK + R+
Sbjct: 122 DPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMV 181
Query: 563 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTR 622
+D+++LN VTI + YP+P I+ + L AK F+ +DL SG+HQI +K+ D+ KTAFST
Sbjct: 182 VDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTL 241
Query: 623 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
G YE+ +PFG+ NAP +F ++ I + + V+IDDI+++S+D
Sbjct: 242 NGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSED 290
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 136 bits (342), Expect = 5e-31
Identities = 105/382 (27%), Positives = 185/382 (47%), Gaps = 52/382 (13%)
Query: 332 LVAIIDTGATHCFIAFDCVSALGLDLFDMNGE--MVVETPAKGLVTTSLVCLRCLLSMFG 389
L +DTGA+ C + + + +N E ++V+ +T S VC L + G
Sbjct: 40 LHCFVDTGASLCIASKFVIP----EEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAG 95
Query: 390 RDFEMDLVCLPLSGMDVILGMNWLEYNH------------------VHINYFTKSV---- 427
F + V SG+D I+G N+ + VHI T++V
Sbjct: 96 EIFRIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGT 155
Query: 428 --YFSSVEEESGAEF-----LSTKQLKQ-MERDGILMYPLMAS------LSFENQAVIDK 473
+ S+++ S + +ST +++ +E IL S Q + +
Sbjct: 156 EGFLESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKIEEL 215
Query: 474 LQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLL 533
L+ VC + P++ ++ ++ SI L +K + + P + S + + KQ+++LL
Sbjct: 216 LEKVCSENPLDPNKT-----KQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELL 270
Query: 534 EKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 589
+ K ++PS SP AP LV +K+ G R+ ++Y+ +NK T+ + Y LP D+L+ +
Sbjct: 271 DLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLI 330
Query: 590 VGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRI 649
G K+FS D +SG+ Q+ + E TAF+ GHYE+ V+PFG+ AP +F +M+
Sbjct: 331 RGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEA 390
Query: 650 FHAFLDRFVVVFIDDILIYSKD 671
F F +F V++DDIL++S +
Sbjct: 391 FRVF-RKFCCVYVDDILVFSNN 411
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 136 bits (342), Expect = 5e-31
Identities = 102/370 (27%), Positives = 182/370 (48%), Gaps = 35/370 (9%)
Query: 332 LVAIIDTGATHCFIAFDCVSALGLDLFDMNGE--MVVETPAKGLVTTSLVCLRCLLSMFG 389
L +DTGA+ C + + + +N E ++V+ +T + VC L + G
Sbjct: 42 LHCFVDTGASLCIASKFVIP----EEHWINAERPIMVKIADGSSITINKVCRDIDLIIAG 97
Query: 390 RDFEMDLVCLPLSGMDVILGMNWLEYNHVHINY-----FTKS-VYFSSVEEESGAEFLST 443
F + V SG+D I+G N+ + I + FTK Y + + + A + T
Sbjct: 98 EIFHIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKDRTYPVHIAKLTRAVRVGT 157
Query: 444 KQ-LKQMERDGILMYPLMASLSFENQAVID---------------KLQVVCDFPEVFPDE 487
+ L+ M++ P ++S A++ ++Q + + E E
Sbjct: 158 EGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSE 217
Query: 488 IPDVPLERE--VEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPW 545
P P + + ++ SI L +K + + P + S + + KQ+++LL+ K ++PS SP
Sbjct: 218 NPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPH 277
Query: 546 GAPVLLV----KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLR 601
AP LV +K+ G R+ ++Y+ +NK T+ + Y P D+L+ + G K+FS D +
Sbjct: 278 MAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCK 337
Query: 602 SGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVF 661
SG+ Q+ + E TAF+ GHYE+ V+PFG+ AP +F +M+ F F +F V+
Sbjct: 338 SGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVY 396
Query: 662 IDDILIYSKD 671
+DDIL++S +
Sbjct: 397 VDDILVFSNN 406
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 134 bits (336), Expect = 2e-30
Identities = 105/383 (27%), Positives = 187/383 (48%), Gaps = 54/383 (14%)
Query: 332 LVAIIDTGATHCFIAFDCVSALGLDLFDMNGE--MVVETPAKGLVTTSLVCLRCLLSMFG 389
L +DTGA+ C + + + +N E ++V+ +T S VC L +
Sbjct: 40 LHCFVDTGASLCIASKFVIP----EEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAR 95
Query: 390 RDFEMDLVCLPLSGMDVILGMNWLEYNH------------------VHINYFTKSV---- 427
F++ V SG+D I+G N+ + VHI T++V
Sbjct: 96 EIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGT 155
Query: 428 --YFSSVEEESGAEF-----LSTKQLKQMERDGILMYPLMASLSFEN--------QAVID 472
+ S+++ S + +ST +++ ++ I + LS E Q + +
Sbjct: 156 EGFLESMKKRSKTQQPEPVNISTNKIENPLKE-IAILSEGRRLSEEKLFITQQRMQKIEE 214
Query: 473 KLQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDL 532
L+ VC + P++ ++ ++ SI L +K + + P + S + + KQ+++L
Sbjct: 215 LLEKVCSENPLDPNKT-----KQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKEL 269
Query: 533 LEKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQ 588
L+ K ++PS SP AP LV +K+ G R+ ++Y+ +NK TI + Y LP D+L+
Sbjct: 270 LDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTL 329
Query: 589 LVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNR 648
+ G K+FS D +SG+ Q+ + E TAF+ GHYE+ V+PFG+ AP +F +M+
Sbjct: 330 IRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDE 389
Query: 649 IFHAFLDRFVVVFIDDILIYSKD 671
F F +F V++DDIL++S +
Sbjct: 390 AFRVF-RKFCCVYVDDILVFSNN 411
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 132 bits (331), Expect = 9e-30
Identities = 105/382 (27%), Positives = 186/382 (48%), Gaps = 52/382 (13%)
Query: 332 LVAIIDTGATHCFIAFDCVSALGLDLFDMNGE--MVVETPAKGLVTTSLVCLRCLLSMFG 389
L +DTGA+ C + + + +N E ++V+ +T S VC L + G
Sbjct: 41 LHCFVDTGASLCIASKFVIP----EEHWVNAERPIMVKIADGSSITISKVCKDIDLIIVG 96
Query: 390 RDFEMDLVCLPLSGMDVILGMNWLEYNH------------------VHINYFTKSV---- 427
F++ V SG+D I+G N+ + VHI T++V
Sbjct: 97 VIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGT 156
Query: 428 --YFSSVEEESGAEF-----LSTKQLKQ-MERDGILMYP--LMASLSFENQAVIDK---- 473
+ S+++ S + +ST +++ +E IL L F Q + K
Sbjct: 157 EGFLESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQKTEEL 216
Query: 474 LQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLL 533
L+ VC + P++ ++ ++ SI L +K + + P + S + + KQ+++LL
Sbjct: 217 LEKVCSENPLDPNKT-----KQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELL 271
Query: 534 EKKFVRPSVSPWGAPVLLVKKKD----GSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 589
+ K ++PS SP AP LV + G+ R+ ++Y+ +NK T+ + Y LP D+L+ +
Sbjct: 272 DLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLI 331
Query: 590 VGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRI 649
G K+FS D +SG+ Q+ + E TAF+ GHYE+ V+PFG+ AP +F +M+
Sbjct: 332 RGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEA 391
Query: 650 FHAFLDRFVVVFIDDILIYSKD 671
F F +F V++DDI+++S +
Sbjct: 392 FRVF-RKFCCVYVDDIVVFSNN 412
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 130 bits (327), Expect = 3e-29
Identities = 75/229 (32%), Positives = 126/229 (54%), Gaps = 22/229 (9%)
Query: 459 LMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDL--------------I 504
+ A+ N+ V+ +L+ +FPE+F ++ ++ E F+++ +
Sbjct: 252 VQANSEHRNKTVLSQLKK--NFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRL 309
Query: 505 LGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDG------S 558
+PV YR S++ +++ Q++ L++ K V PSVS + +P+LLV KK
Sbjct: 310 KDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKK 369
Query: 559 MRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTA 618
RL IDYRQ+NK + +++PLPRIDD++DQL AK FS +DL SG+HQI++ + T+
Sbjct: 370 WRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITS 429
Query: 619 FSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILI 667
FST G Y + +PFG+ AP F M F +++DD+++
Sbjct: 430 FSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIV 478
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 127 bits (319), Expect = 2e-28
Identities = 96/359 (26%), Positives = 179/359 (49%), Gaps = 31/359 (8%)
Query: 327 INNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRCLLS 386
I +A IDTGAT CF + ++ E+++ +K + ++ L
Sbjct: 26 IGKRNFLAYIDTGATLCFGKRKISN--NWEILKQPKEIIIADKSKHYIREAIS--NVFLK 81
Query: 387 MFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYF-TKSVYFSSVEEESGAEFLSTKQ 445
+ ++F + ++ L SG+D+I+G N+L+ I T + + ++ ++ +STK
Sbjct: 82 IENKEFLIPIIYLHDSGLDLIIGNNFLKLYQPFIQRLETIELRWKNLNNPKESQMISTKI 141
Query: 446 LKQMERDGILMYPLMASLSFENQAV-IDKLQVVCDFPEVFPDEIPDVPLERE-------V 497
L + E + LSFE + ++K E + + PL+ +
Sbjct: 142 LTKNE---------VLKLSFEKIHICLEKYLFFKTIEEQLEEVCSEHPLDETKNKNGLLI 192
Query: 498 EFSI-DLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKK-- 554
E + D + + PY + ++ + K++ EDLL+K +R S SP AP V+
Sbjct: 193 EIRLKDPLQEINVTNRIPYTIR--DVQEFKEECEDLLKKGLIRESQSPHSAPAFYVENHN 250
Query: 555 --KDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDE 612
K G R+ I+Y+++N+ TI + Y LPR D +++++ G+ FS +D +SGY+Q+++ +
Sbjct: 251 EIKRGKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHEN 310
Query: 613 DMQKTAFS-TRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
TAFS HYE+ V+ FG+ AP ++ +M++ L+ + +IDDILI++K
Sbjct: 311 TKPLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKG-LEHICLAYIDDILIFTK 368
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 124 bits (312), Expect = 1e-27
Identities = 61/174 (35%), Positives = 103/174 (59%)
Query: 497 VEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKD 556
+EF ++L + + Y + ++ + ++ L+ +R S + PV+ V KK+
Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
Query: 557 GSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQK 616
G++R+ +DY+ LNK N YPLP I+ L+ ++ G+ +F+K+DL+S YH I+V+ D K
Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519
Query: 617 TAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
AF G +EY VMP+G++ AP F ++N I + VV ++DDILI+SK
Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSK 573
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 122 bits (307), Expect = 6e-27
Identities = 82/297 (27%), Positives = 151/297 (50%), Gaps = 21/297 (7%)
Query: 382 RCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEESGAEFL 441
+CL+ +F + + L+ D I+G++ L V +N S+ + + E+ +
Sbjct: 67 KCLMKVF-KHISPFFLLDSLNAFDAIIGLDLLTQAGVKLNLAEDSLEYQGIAEK--LHYF 123
Query: 442 STKQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSI 501
S + + + I++ P F++ + K + F +P V +I
Sbjct: 124 SCPSVNFTDVNDIVV-PDSVKKEFKDTIIRRK--------KAFSTTNEALPFNTAVTATI 174
Query: 502 DLILGTKPVSMA-PYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKK----- 555
+ S A P M S+ + +++ LL+ +RPS SP+ +P +V KK
Sbjct: 175 RTVDNEPVYSRAYPTLMGVSDF--VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAF 232
Query: 556 -DGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDM 614
+ + RL ID+R+LN+ TI +RYP+P I ++ L AK F+ +DL+SGYHQI + + D
Sbjct: 233 GNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDR 292
Query: 615 QKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
+KT+FS G YE+ +PFG+ NA +F ++ + + + V++DD++I+S++
Sbjct: 293 EKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSEN 349
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 122 bits (305), Expect = 9e-27
Identities = 60/174 (34%), Positives = 103/174 (58%)
Query: 497 VEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKD 556
+EF ++L + + Y + ++ + ++ L+ +R S + PV+ V KK+
Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
Query: 557 GSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQK 616
G++R+ +DY+ LNK N YPLP I+ L+ ++ G+ +F+K+DL+S YH I+V+ D K
Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519
Query: 617 TAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
AF G +EY VMP+G++ AP F ++N I + VV ++D+ILI+SK
Sbjct: 520 LAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSK 573
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 122 bits (305), Expect = 9e-27
Identities = 60/174 (34%), Positives = 103/174 (58%)
Query: 497 VEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKD 556
+EF ++L + + Y + ++ + ++ L+ +R S + PV+ V KK+
Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459
Query: 557 GSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQK 616
G++R+ +DY+ LNK N YPLP I+ L+ ++ G+ +F+K+DL+S YH I+V+ D K
Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519
Query: 617 TAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
AF G +EY VMP+G++ AP F ++N I + VV ++D+ILI+SK
Sbjct: 520 LAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSK 573
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 122 bits (305), Expect = 9e-27
Identities = 87/354 (24%), Positives = 172/354 (48%), Gaps = 24/354 (6%)
Query: 336 IDTGATHCFIAFDCVSALGLDLFDMNGEMV-VETPAKGLVTTSLVCLRCLLSMFGRDFEM 394
+DTGA+ C + + +L++ + + + V+ + L+ + VC + G+ FE+
Sbjct: 53 VDTGASLCIASRYIIPE---ELWENSPKDIQVKIANQELIKITKVCKNLKVKFAGKSFEI 109
Query: 395 DLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVE-----------EESGAEFLST 443
V +G+D ++G N+ + I + + + E S FL
Sbjct: 110 PTVYQQETGIDFLIGNNFCRLYNPFIQWEDRIAFHLKNEMVLIKKVTKAFSVSNPSFLEN 169
Query: 444 --KQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLERE--VEF 499
K K + G + + + + +K Q + + E P P++ + ++
Sbjct: 170 MKKDSKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVCSENPIDPIKSKQWMKA 229
Query: 500 SIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVK----KK 555
SI LI K + + P S + KQ+++LL+ + PS S +P LV+ ++
Sbjct: 230 SIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENEAERR 289
Query: 556 DGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQ 615
G R+ ++Y+ +N+ TI + + LP + +L+ L G +FS D +SG+ Q+ + +E +
Sbjct: 290 RGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQK 349
Query: 616 KTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYS 669
TAF+ GH+++KV+PFG+ AP +F +M + D+F +V++DDI+++S
Sbjct: 350 LTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFS 402
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 112 bits (279), Expect = 1e-23
Identities = 96/385 (24%), Positives = 176/385 (44%), Gaps = 46/385 (11%)
Query: 326 YINNTPLVAIIDTGATHCFIAFDCV-------SALGLDLFDMNGEMVVETPAKGLVTTSL 378
Y N L +DTG++ C + + + L++ NG+++ T
Sbjct: 23 YQTNLDLHCYVDTGSSLCMASKYVIPEEYWQTAEKPLNIKIANGKIIQLTK--------- 73
Query: 379 VCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEE---- 434
VC + + + G F + + SG+D++LG N+ + I Y T +YF ++
Sbjct: 74 VCSKLPIRLGGERFLIPTLFQQESGIDLLLGNNFCQLYSPFIQY-TDRIYFHLNKQSVII 132
Query: 435 -------ESGAE-FL-STKQLKQMERDGILMYPLMASLSFEN----------QAVIDKLQ 475
+ G + FL S K+ ++ R + L E + I K
Sbjct: 133 GKITKAYQYGVKGFLESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDEMLYEIQISKFS 192
Query: 476 VVCDFPEVFPDEIPDVPLERE--VEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLL 533
+ + E E P P + + + +I+LI V + P S S+ + +Q+++LL
Sbjct: 193 AIEEMLERVSSENPIDPEKSKQWMTATIELIDPKTVVKVKPMSYSPSDREEFDRQIKELL 252
Query: 534 EKKFVRPSVSPWGAPVLLVK----KKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 589
E K ++PS S +P LV+ ++ G R+ ++Y+ +NK T + + LP D+L+ +
Sbjct: 253 ELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLV 312
Query: 590 VGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRI 649
G K++S D +SG Q+ + E TAF+ GHY++ V+PFG+ AP +F +
Sbjct: 313 RGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANS 372
Query: 650 FHAFLDRFVVVFIDDILIYSKD*RR 674
++ V++DDIL++S R+
Sbjct: 373 HSNQYSKYCCVYVDDILVFSNTGRK 397
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 106 bits (264), Expect = 5e-22
Identities = 105/442 (23%), Positives = 211/442 (46%), Gaps = 44/442 (9%)
Query: 256 EEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQTE 315
EE + + K+ IV + + C EE H + K+ G G + +
Sbjct: 1149 EETRMAIAQLKEAIIVQEEDTIEERCAMILEEKHTENIYSATAKAEYNGLYNVKVGIKPD 1208
Query: 316 NEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVT 375
N + YIN AI+DTGAT C I +SA+ + ++ + ++ V + +
Sbjct: 1209 NMEPY-----YIN-----AIVDTGATACLIQ---ISAIPENYYE-DAKVTVNFRSVLGIG 1254
Query: 376 TSLVCLRCLLSMFGRDFEMDLVCLPLS-----GMDVILGMNWLEYNHVHINYFTKSVYF- 429
TS ++ + G + V ++ G+ +I+G +++ + + F
Sbjct: 1255 TSTQMIKAGRILIGEQYFRMPVTYVMNMGLSPGIQMIIGCSFIRSLEGGLRIEKDIITFY 1314
Query: 430 ---SSVEEESGAEFL-STKQLKQMERDGILMYPLMASLSFENQAVIDKLQ-VVCDFPEVF 484
+S+E + S ++L+ E + + + + + SF +Q K + ++ + E+
Sbjct: 1315 KLVTSIETSRTTQVANSIEELELSEDEYLNIAASVETPSFLDQEFARKNKDLLKEMKEM- 1373
Query: 485 PDEIPDVPLE----REVEFSIDLILGTKPVSMAPYR-MSASELAKLKKQLEDLLEKKFVR 539
I + P+E +++ +++I + P + ++ + + +Q+ LL+ K +R
Sbjct: 1374 -KYIGENPMEFWKNNKIKCKLNIINPDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIR 1432
Query: 540 PSVSPWGAPVLLV-----------KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQ 588
PS S + +V K+K G R+ +Y+ LN+ T ++Y LP I+ ++ +
Sbjct: 1433 PSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISK 1492
Query: 589 LVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNR 648
+ +K++SK DL+SG+ Q+ +++E + TAF YE+ VMPFG+ NAP +F M+
Sbjct: 1493 VGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDN 1552
Query: 649 IFHAFLDRFVVVFIDDILIYSK 670
+F ++F+ V+IDDIL++S+
Sbjct: 1553 VFKG-TEKFIAVYIDDILVFSE 1573
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 99.4 bits (246), Expect = 7e-20
Identities = 119/467 (25%), Positives = 190/467 (40%), Gaps = 71/467 (15%)
Query: 209 RPKPYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSNVCPEEIKKCVRCGKKG 268
+P S D K VD R KKK P EK + + EI C C KKG
Sbjct: 196 KPSKSSQQVDVNK---VDTNRSKKKKKPIP----RKPEKSSQDSKKKGEIPTCFYCNKKG 248
Query: 269 HIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQTENEDRLIRCTCYIN 328
H +C+ N + G+ G K K + V LD +TE++ + R + +
Sbjct: 249 HYATNCRSNP-------KTGNQGGN-KGKSKGCDSVHVDGLD-VKTEHQAKH-RMSVEVC 298
Query: 329 NTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRCLLSMF 388
+ +DTG+ I+ C LG + + + A G T V RCL+
Sbjct: 299 GKDVAFQLDTGSMITLISVKCWEKLGSPPLEKVPHRI--SCANG--TPMAVKGRCLVKFK 354
Query: 389 GRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEESGAEFLSTKQLKQ 448
+ E +LG +WL L
Sbjct: 355 LKGIEYTEYVYVRDRQTNLLGTSWLN-------------------------------LCP 383
Query: 449 MERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLE----REVEFSIDLI 504
R + S S E +A ++ + DFPEVF D + E R E ++ +
Sbjct: 384 QMRSALAQIVNQVSTS-ETEASRLEVMLKNDFPEVFKDGLGLCTKEKAEFRTEENAVPVF 442
Query: 505 LGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRP-SVSPWGAPVLLVKKKD-GSMRLC 562
+PV PY L ++ +L L E + P + + W AP++++KKK G +R+C
Sbjct: 443 KRARPV---PY----GSLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVC 495
Query: 563 IDYR--QLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFS 620
D++ LN +PLP +D+ +L G V+S+IDL+ Y Q+++ +E + +
Sbjct: 496 ADFKCSGLNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLKDAYLQVELDEEAQKLAVIN 554
Query: 621 TRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILI 667
T G ++Y M FG+ AP F + M+++ V V+ DDI+I
Sbjct: 555 THRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVYWDDIII 599
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.349 0.155 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,586,919
Number of Sequences: 164201
Number of extensions: 5936309
Number of successful extensions: 24628
Number of sequences better than 10.0: 213
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 23804
Number of HSP's gapped (non-prelim): 536
length of query: 1478
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1355
effective length of database: 39,777,331
effective search space: 53898283505
effective search space used: 53898283505
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC141111.5