BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.4 - phase: 0 /pseudo
(1069 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP) (... 63 5e-09
CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)... 63 5e-09
CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)... 63 5e-09
CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP) 63 5e-09
GIS2_YEAST (P53849) Zinc-finger protein GIS2 60 4e-08
HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 58 1e-07
ZCH3_HUMAN (Q9NUD5) Zinc finger CCHC domain containing protein 3 57 3e-07
BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog 55 1e-06
YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I 51 2e-05
GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-... 50 2e-05
GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 50 4e-05
GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17; ... 49 6e-05
GAG_HV1U4 (P24736) Gag polyprotein [Contains: Core protein p17 (... 48 1e-04
GAG_HV1EL (P04592) Gag polyprotein [Contains: Core protein p17 (... 48 1e-04
GAG_HV1Y2 (P35962) Gag polyprotein [Contains: Core protein p17 (... 48 2e-04
GAG_HV1PV (P03350) Gag polyprotein [Contains: Core protein p17 (... 48 2e-04
GAG_HV1J3 (P12494) Gag polyprotein [Contains: Core protein p17 (... 48 2e-04
GAG_HV1H2 (P04591) Gag polyprotein [Contains: Core protein p17 (... 48 2e-04
GAG_HV1B1 (P03347) Gag polyprotein [Contains: Core protein p17 (... 48 2e-04
GAG_HV1A2 (P03349) Gag polyprotein [Contains: Core protein p17 (... 48 2e-04
>CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 62.8 bits (151), Expect = 5e-09
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 85 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 139
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 140 CGETGHVAINCSKTSEV 156
Score = 60.8 bits (146), Expect = 2e-08
Identities = 23/59 (38%), Positives = 33/59 (54%), Gaps = 4/59 (6%)
Query: 144 VCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD E C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 56.6 bits (135), Expect = 3e-07
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 119 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Score = 52.8 bits (125), Expect = 5e-06
Identities = 26/89 (29%), Positives = 34/89 (37%), Gaps = 28/89 (31%)
Query: 145 CFKCGEKGHKSNVCDRDEKK----------------------------CFRCGKKGHTLA 176
CFKCG GH + C + C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 177 DCKRGDIVCYNFNEEGHISLQCTQPKKVR 205
DC + CYN GHI+ C +PK+ R
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKRER 94
Score = 43.9 bits (102), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 133 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
>CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 178
Score = 62.8 bits (151), Expect = 5e-09
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 86 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 140
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 141 CGETGHVAINCSKTSEV 157
Score = 57.8 bits (138), Expect = 2e-07
Identities = 28/75 (37%), Positives = 36/75 (47%), Gaps = 5/75 (6%)
Query: 138 DAPTDIVCFKCGEKGHKSNVCDRDEKK----CFRCGKKGHTLADCKRGDIV-CYNFNEEG 192
D D C+ CG GH + C +++ C+ CGK GH DC D CY+ E G
Sbjct: 68 DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 127
Query: 193 HISLQCTQPKKVRTG 207
HI CT+ K R G
Sbjct: 128 HIQKDCTKVKCYRCG 142
Score = 57.8 bits (138), Expect = 2e-07
Identities = 22/60 (36%), Positives = 36/60 (59%), Gaps = 5/60 (8%)
Query: 144 VCFKCGEKGHKSNVCD-RDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD ++++ C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 56.6 bits (135), Expect = 3e-07
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 120 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 173
Score = 50.8 bits (120), Expect = 2e-05
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 29/90 (32%)
Query: 145 CFKCGEKGHKSNVCDRDEKK----------------------------CFRCGKKGHTLA 176
CFKCG GH + C + C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 177 DCK-RGDIVCYNFNEEGHISLQCTQPKKVR 205
DC + D CYN GHI+ C +PK+ R
Sbjct: 66 DCDLQEDEACYNCGRGGHIAKDCKEPKRER 95
Score = 43.9 bits (102), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 134 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172
>CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 62.8 bits (151), Expect = 5e-09
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 85 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 139
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 140 CGETGHVAINCSKTSEV 156
Score = 60.8 bits (146), Expect = 2e-08
Identities = 23/59 (38%), Positives = 33/59 (54%), Gaps = 4/59 (6%)
Query: 144 VCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD E C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 56.6 bits (135), Expect = 3e-07
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 119 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Score = 52.8 bits (125), Expect = 5e-06
Identities = 26/89 (29%), Positives = 34/89 (37%), Gaps = 28/89 (31%)
Query: 145 CFKCGEKGHKSNVCDRDEKK----------------------------CFRCGKKGHTLA 176
CFKCG GH + C + C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 177 DCKRGDIVCYNFNEEGHISLQCTQPKKVR 205
DC + CYN GHI+ C +PK+ R
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKRER 94
Score = 43.9 bits (102), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 133 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
>CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP)
Length = 172
Score = 62.8 bits (151), Expect = 5e-09
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 80 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 134
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 135 CGETGHVAINCSKTSEV 151
Score = 59.3 bits (142), Expect = 5e-08
Identities = 23/60 (38%), Positives = 36/60 (59%), Gaps = 5/60 (8%)
Query: 144 VCFKCGEKGHKSNVCD-RDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD +++K C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 47 ICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 57.8 bits (138), Expect = 2e-07
Identities = 28/75 (37%), Positives = 36/75 (47%), Gaps = 5/75 (6%)
Query: 138 DAPTDIVCFKCGEKGHKSNVCDRDEKK----CFRCGKKGHTLADCKRGDIV-CYNFNEEG 192
D D C+ CG GH + C +++ C+ CGK GH DC D CY+ E G
Sbjct: 62 DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 121
Query: 193 HISLQCTQPKKVRTG 207
HI CT+ K R G
Sbjct: 122 HIQKDCTKVKCYRCG 136
Score = 56.6 bits (135), Expect = 3e-07
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 114 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 167
Score = 52.4 bits (124), Expect = 7e-06
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 23/84 (27%)
Query: 145 CFKCGEKGHKSNVCDRDEKK----------------------CFRCGKKGHTLADCK-RG 181
CFKCG GH + C + C+RCG+ GH DC +
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 182 DIVCYNFNEEGHISLQCTQPKKVR 205
D CYN GHI+ C +PK+ R
Sbjct: 66 DKACYNCGRGGHIAKDCKEPKRER 89
Score = 43.9 bits (102), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 128 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
>GIS2_YEAST (P53849) Zinc-finger protein GIS2
Length = 153
Score = 59.7 bits (143), Expect = 4e-08
Identities = 27/69 (39%), Positives = 38/69 (54%), Gaps = 5/69 (7%)
Query: 134 PKMRDAPTDIVCFKCGEKGHKSNVCDRDEK----KCFRCGKKGHTLADCKRGDIVCYNFN 189
PK + + C+KCG H + C +++ KC+ CG+ GH DC+ D +CYN N
Sbjct: 83 PKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN-DRLCYNCN 141
Query: 190 EEGHISLQC 198
E GHIS C
Sbjct: 142 ETGHISKDC 150
Score = 58.2 bits (139), Expect = 1e-07
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 138 DAPTDIVCFKCGEKGHKSNVCDRDE----KKCFRCGKKGHTLADCKRGDIVCYNFNEEGH 193
D ++ +C+ C + GH C K+C+ CG+ GH ++C C+N N+ GH
Sbjct: 18 DCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQR--CFNCNQTGH 75
Query: 194 ISLQCTQPKKVRTGGKV 210
IS +C +PKK KV
Sbjct: 76 ISRECPEPKKTSRFSKV 92
Score = 48.1 bits (113), Expect = 1e-04
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 162 EKKCFRCGKKGHTLADCKRGDIVCYNFNEEGHISLQCTQPKKV 204
+K C+ CGK GH DC + +CYN N+ GH+ CT P+ V
Sbjct: 3 QKACYVCGKIGHLAEDCD-SERLCYNCNKPGHVQTDCTMPRTV 44
Score = 40.8 bits (94), Expect = 0.020
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
Query: 138 DAPTDIVCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCKR 180
D + + C+ CG+ GH S C D + C+ C + GH DC +
Sbjct: 111 DGISGLKCYTCGQAGHMSRDCQND-RLCYNCNETGHISKDCPK 152
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding
protein)
Length = 271
Score = 58.2 bits (139), Expect = 1e-07
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 108 KGQLSRPKPYSAPPDKGK*RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDE----- 162
+G LSR P S +G K R D C+KCG+ GH S C +
Sbjct: 105 EGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSG 164
Query: 163 ---KKCFRCGKKGHTLADCKR--------GDIVCYNFNEEGHISLQCTQPKKVRTGGK 209
+ C++CG GH DC GD CY E GH+S +C +G +
Sbjct: 165 AGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDR 222
Score = 57.0 bits (136), Expect = 3e-07
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 145 CFKCGEKGHKSNVCDRDEKK-------CFRCGKKGHTLADCKRG-------DIVCYNFNE 190
CF+CGE+GH S C + + CFRCG+ GH DC CY +
Sbjct: 45 CFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQ 104
Query: 191 EGHISLQCTQPKKVRTGG 208
EGH+S C + GG
Sbjct: 105 EGHLSRDCPSSQGGSRGG 122
Score = 55.5 bits (132), Expect = 8e-07
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 142 DIVCFKCGEKGHKSNVCDRDE--------KKCFRCGKKGHTLADCKR------GDIVCYN 187
D C+KCG+ GH S C + +KC++CG+ GH +C GD CY
Sbjct: 167 DRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYK 226
Query: 188 FNEEGHISLQCTQ 200
+ GHIS +C +
Sbjct: 227 CGKPGHISRECPE 239
Score = 55.5 bits (132), Expect = 8e-07
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 17/74 (22%)
Query: 142 DIVCFKCGEKGHKSNVC------DRDEKKCFRCGKKGHTLADCKR-----------GDIV 184
D C+KCGE GH S C ++ C++CGK GH +C GD
Sbjct: 195 DRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRT 254
Query: 185 CYNFNEEGHISLQC 198
CY E GHIS C
Sbjct: 255 CYKCGEAGHISRDC 268
Score = 51.6 bits (122), Expect = 1e-05
Identities = 26/89 (29%), Positives = 41/89 (45%), Gaps = 17/89 (19%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKK-------CFRCGKKGHTLADCKR- 180
+D +RP+ + + C CG++GH + C + K CFRCG++GH +C
Sbjct: 5 EDVKRPRTESSTS---CRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61
Query: 181 ------GDIVCYNFNEEGHISLQCTQPKK 203
G + C+ E GH+S C K
Sbjct: 62 ARSGAAGAMTCFRCGEAGHMSRDCPNSAK 90
Score = 50.8 bits (120), Expect = 2e-05
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 30/86 (34%)
Query: 143 IVCFKCGEKGHKSNVCDRDEK-------KCFRCGKKGHTLADC-------------KR-- 180
+ CF+CGE GH S C K +C++CG++GH DC KR
Sbjct: 70 MTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGR 129
Query: 181 --------GDIVCYNFNEEGHISLQC 198
GD CY + GHIS C
Sbjct: 130 SGAQGGYSGDRTCYKCGDAGHISRDC 155
Score = 48.5 bits (114), Expect = 9e-05
Identities = 32/121 (26%), Positives = 41/121 (33%), Gaps = 47/121 (38%)
Query: 109 GQLSRPKPYSAPPDKGK*RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDE------ 162
G +SR P SA P K C+KCG++GH S C +
Sbjct: 79 GHMSRDCPNSAKPGAAK----------------GFECYKCGQEGHLSRDCPSSQGGSRGG 122
Query: 163 -----------------KKCFRCGKKGHTLADCKR--------GDIVCYNFNEEGHISLQ 197
+ C++CG GH DC GD CY + GHIS
Sbjct: 123 YGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRD 182
Query: 198 C 198
C
Sbjct: 183 C 183
>ZCH3_HUMAN (Q9NUD5) Zinc finger CCHC domain containing protein 3
Length = 404
Score = 57.0 bits (136), Expect = 3e-07
Identities = 28/60 (46%), Positives = 36/60 (59%), Gaps = 5/60 (8%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCKRGDIVCYNFNEEGHISLQCTQPKKV 204
CFKCG + H S C +D +CFRCG++GH C++G IVC + GH QC PK V
Sbjct: 336 CFKCGSRTHMSGSCTQD--RCFRCGEEGHLSPYCRKG-IVCNLCGKRGHAFAQC--PKAV 390
Score = 44.3 bits (103), Expect = 0.002
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 111 LSRPKPYSAPPDKGK*RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKKCFRCGK 170
L + YS + K K R M + T CF+CGE+GH S C R C CGK
Sbjct: 320 LGAERGYSWYKGQPKTCFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYC-RKGIVCNLCGK 378
Query: 171 KGHTLADCKR 180
+GH A C +
Sbjct: 379 RGHAFAQCPK 388
>BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog
Length = 179
Score = 55.1 bits (131), Expect = 1e-06
Identities = 23/59 (38%), Positives = 34/59 (56%), Gaps = 3/59 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCKRGDI--VCYNFNEEGHISLQCTQP 201
C+ CG GH++ C K C+ CGK GH +C++ +CY N+ GHI++ CT P
Sbjct: 118 CYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTSP 175
Score = 52.4 bits (124), Expect = 7e-06
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 131 ERRPKMRDAPTDIVCFKCGEKGHKSNVCD--RDEKKCFRCGKKGHTLADC-----KRGDI 183
E + R+ +C+ C + GHK++ C + EK C+ CG GH + DC R
Sbjct: 24 ENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGA 83
Query: 184 VCYNFNEEGHISLQC 198
CY GHI+ C
Sbjct: 84 ECYKCGRVGHIARDC 98
Score = 51.2 bits (121), Expect = 1e-05
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 160 RDEKKCFRCGKKGHTLADCKRGDIVCYNFNEEGHISLQCTQPKKVRT 206
R +C+ CG+ GH +C +G I CYN N+ GH + +CT+P++ +T
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI-CYNCNQTGHKASECTEPQQEKT 59
Score = 46.2 bits (108), Expect = 5e-04
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC--KRGDIVCYNFNEEGHISLQCTQPK 202
C+ CGE GH++ C + C+ C + GH ++C + + CY GH+ C
Sbjct: 19 CYNCGENGHQARECTKG-SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSP 77
Query: 203 KVRTGGKVF 211
R G + +
Sbjct: 78 NPRQGAECY 86
Score = 45.8 bits (107), Expect = 6e-04
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 145 CFKCGEKGHKSNVCD-----RDEKKCFRCGKKGHTLADCK-------------RGDIVCY 186
C+ CG GH C R +C++CG+ GH DC+ R ++ CY
Sbjct: 60 CYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCY 119
Query: 187 NFNEEGHISLQCTQPKKVRTGGKV 210
GH + CT K + GK+
Sbjct: 120 ACGSYGHQARDCTMGVKCYSCGKI 143
Score = 40.8 bits (94), Expect = 0.020
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 137 RDAPTDIVCFKCGEKGHKSNVCDR--DEKKCFRCGKKGHTLADC 178
RD + C+ CG+ GH+S C + D + C++C + GH +C
Sbjct: 129 RDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I
Length = 218
Score = 50.8 bits (120), Expect = 2e-05
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 103 SERRGKGQLSRPKPYSAPPDKGK*RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDE 162
S+ K K Y K + + RR R+ D CF C ++GH C +
Sbjct: 39 SQDNMKASFGSSKRYDERQKKKRSEYRRLRRINQRNR--DKFCFACRQQGHIVQDCPEAK 96
Query: 163 KK---CFRCGKKGHTLADC-KRGDI---VCYNFNEEGHISLQCTQPKK 203
CFRCG K H+L C K+G + C+ +E GH+S QC Q K
Sbjct: 97 DNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPK 144
Score = 43.9 bits (102), Expect = 0.002
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 144 VCFKCGEKGHKSNVCDRDE----KKCFRCGKKGHTLADCKRGDI-------VCYNFNEEG 192
+CF+CG K H N C + KCF C + GH C++ C +
Sbjct: 101 ICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVH 160
Query: 193 HISLQCTQPKKVRTG-GKVFALTGTQTVNED 222
H++ C Q K G V + GT +ED
Sbjct: 161 HLAKDCDQVNKDDVSFGHVVGVAGTTGADED 191
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-)
(Germline helicase-4)
Length = 1156
Score = 50.4 bits (119), Expect = 2e-05
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 145 CFKCGEKGHKSNVCDRDEK---KCFRCGKKGHTLADCKRGDI---VCYNFNEEGHISLQC 198
C CGE+GH S CD+ + C C + GH +DC + + C N EGH ++ C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 199 TQPKKVR 205
QPK R
Sbjct: 632 DQPKVPR 638
Score = 40.8 bits (94), Expect = 0.020
Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 10/71 (14%)
Query: 145 CFKCGEKGHKSNVCDRDEKK---CFRCGKKGHTLADCKRGDI------VCYNFNEEGHIS 195
C CG +GH + CD+ + C CG++GH DC+ + C EEGH
Sbjct: 618 CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWG 677
Query: 196 LQC-TQPKKVR 205
+C T+PK ++
Sbjct: 678 YECPTRPKDLQ 688
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-)
(Germline helicase-2)
Length = 974
Score = 49.7 bits (117), Expect = 4e-05
Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 45/118 (38%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEK------------------------- 163
K ER P+ VC+ C + GH S C + K
Sbjct: 390 KKEREPR--------VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNA 441
Query: 164 ------------KCFRCGKKGHTLADCKRGDIVCYNFNEEGHISLQCTQPKKVRTGGK 209
KCF C +GH A+C C+N E+GH S +C P K R G +
Sbjct: 442 EGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPREGAE 499
Score = 45.8 bits (107), Expect = 6e-04
Identities = 25/101 (24%), Positives = 38/101 (36%), Gaps = 42/101 (41%)
Query: 145 CFKCGEKGHKSNVC-----DRDEKKCFRCGKKGHTLADC--------------------- 178
CF C + GH+SN C +R+ + C+ C + GH DC
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGN 432
Query: 179 ----------------KRGDIVCYNFNEEGHISLQCTQPKK 203
+RG + C+N EGH S +C +P +
Sbjct: 433 DGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR 473
Score = 42.0 bits (97), Expect = 0.009
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 159 DRDEKK--CFRCGKKGHTLADC-----KRGDIVCYNFNEEGHISLQCTQPKKVRTGGKVF 211
DR E+ CF C + GH DC +R VCYN + GH S C + +K R G F
Sbjct: 251 DRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGF 310
Score = 42.0 bits (97), Expect = 0.009
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 159 DRDEKK--CFRCGKKGHTLADC-----KRGDIVCYNFNEEGHISLQCTQPKKVRTGGKVF 211
DR E+ CF C + GH DC +R VCYN + GH S C + +K R G F
Sbjct: 365 DRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGF 424
>GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17;
Core protein p24; Core protein p15]
Length = 513
Score = 49.3 bits (116), Expect = 6e-05
Identities = 24/61 (39%), Positives = 30/61 (48%), Gaps = 4/61 (6%)
Query: 134 PKMRDAPTDIVCFKCGEKGHKSNVCDRDEK-KCFRCGKKGHTLADCKRGDIVCYNFNEEG 192
P+ + + CF CG+ GH C + KCF+CGK GH DCK G NF G
Sbjct: 381 PQKKGPRGPLKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQA---NFLGYG 437
Query: 193 H 193
H
Sbjct: 438 H 438
>GAG_HV1U4 (P24736) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 492
Score = 48.1 bits (113), Expect = 1e-04
Identities = 19/40 (47%), Positives = 26/40 (64%), Gaps = 1/40 (2%)
Query: 140 PTDIVCFKCGEKGHKSNVCDRDEKK-CFRCGKKGHTLADC 178
P I CF CG++GH + C KK C++CGK+GH + DC
Sbjct: 380 PRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDC 419
Score = 37.4 bits (85), Expect = 0.22
Identities = 17/41 (41%), Positives = 23/41 (55%), Gaps = 7/41 (17%)
Query: 164 KCFRCGKKGHTLADC----KRGDIVCYNFNEEGHISLQCTQ 200
KCF CGK+GH +C K+G C+ +EGH CT+
Sbjct: 384 KCFNCGKEGHLAKNCRAPRKKG---CWKCGKEGHQMKDCTE 421
>GAG_HV1EL (P04592) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 48.1 bits (113), Expect = 1e-04
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 143 IVCFKCGEKGHKSNVCDRDEKK-CFRCGKKGHTLADC 178
I CF CG++GH + C KK C+RCGK+GH L DC
Sbjct: 390 IKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDC 426
Score = 37.0 bits (84), Expect = 0.28
Identities = 17/41 (41%), Positives = 23/41 (55%), Gaps = 7/41 (17%)
Query: 164 KCFRCGKKGHTLADC----KRGDIVCYNFNEEGHISLQCTQ 200
KCF CGK+GH +C K+G C+ +EGH CT+
Sbjct: 391 KCFNCGKEGHIAKNCRAPRKKG---CWRCGKEGHQLKDCTE 428
>GAG_HV1Y2 (P35962) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 47.8 bits (112), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 1/48 (2%)
Query: 132 RRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKK-CFRCGKKGHTLADC 178
+R R+ + CF CG++GH + C KK C++CGK+GH + DC
Sbjct: 378 QRGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDC 425
Score = 37.7 bits (86), Expect = 0.17
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 160 RDEKKCFRCGKKGHTLADC----KRGDIVCYNFNEEGHISLQCTQ 200
R KCF CGK+GH +C K+G C+ +EGH CT+
Sbjct: 386 RKTVKCFNCGKEGHIAKNCRAPRKKG---CWKCGKEGHQMKDCTE 427
>GAG_HV1PV (P03350) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 47.8 bits (112), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 1/48 (2%)
Query: 132 RRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKK-CFRCGKKGHTLADC 178
+R R+ + CF CG++GH + C KK C++CGK+GH + DC
Sbjct: 378 QRGNFRNQRKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDC 425
Score = 39.7 bits (91), Expect = 0.044
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 7/41 (17%)
Query: 164 KCFRCGKKGHTLADC----KRGDIVCYNFNEEGHISLQCTQ 200
KCF CGK+GHT +C K+G C+ +EGH CT+
Sbjct: 390 KCFNCGKEGHTARNCRAPRKKG---CWKCGKEGHQMKDCTE 427
>GAG_HV1J3 (P12494) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 47.8 bits (112), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (59%), Gaps = 1/48 (2%)
Query: 132 RRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKK-CFRCGKKGHTLADC 178
+R R+ I CF CG++GH + C KK C++CGK+GH + DC
Sbjct: 378 QRGNFRNQRKIIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 425
Score = 35.4 bits (80), Expect = 0.82
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 164 KCFRCGKKGHTLADC----KRGDIVCYNFNEEGHISLQCTQ 200
KCF CGK+GH +C K+G C+ +EGH C +
Sbjct: 390 KCFNCGKEGHLARNCRAPRKKG---CWKCGKEGHQMKDCNE 427
>GAG_HV1H2 (P04591) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 47.8 bits (112), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 1/48 (2%)
Query: 132 RRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKK-CFRCGKKGHTLADC 178
+R R+ + CF CG++GH + C KK C++CGK+GH + DC
Sbjct: 378 QRGNFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDC 425
Score = 39.7 bits (91), Expect = 0.044
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 7/41 (17%)
Query: 164 KCFRCGKKGHTLADC----KRGDIVCYNFNEEGHISLQCTQ 200
KCF CGK+GHT +C K+G C+ +EGH CT+
Sbjct: 390 KCFNCGKEGHTARNCRAPRKKG---CWKCGKEGHQMKDCTE 427
>GAG_HV1B1 (P03347) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 47.8 bits (112), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 1/48 (2%)
Query: 132 RRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKK-CFRCGKKGHTLADC 178
+R R+ + CF CG++GH + C KK C++CGK+GH + DC
Sbjct: 378 QRGNFRNQRKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDC 425
Score = 39.7 bits (91), Expect = 0.044
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 7/41 (17%)
Query: 164 KCFRCGKKGHTLADC----KRGDIVCYNFNEEGHISLQCTQ 200
KCF CGK+GHT +C K+G C+ +EGH CT+
Sbjct: 390 KCFNCGKEGHTARNCRAPRKKG---CWKCGKEGHQMKDCTE 427
>GAG_HV1A2 (P03349) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 501
Score = 47.8 bits (112), Expect = 2e-04
Identities = 19/48 (39%), Positives = 29/48 (59%), Gaps = 1/48 (2%)
Query: 132 RRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKK-CFRCGKKGHTLADC 178
+R R+ + CF CG++GH + C KK C+RCG++GH + DC
Sbjct: 380 QRGNFRNQRKTVKCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMKDC 427
Score = 37.4 bits (85), Expect = 0.22
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 160 RDEKKCFRCGKKGHTLADC----KRGDIVCYNFNEEGHISLQCTQ 200
R KCF CGK+GH +C K+G C+ EGH CT+
Sbjct: 388 RKTVKCFNCGKEGHIAKNCRAPRKKG---CWRCGREGHQMKDCTE 429
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.369 0.167 0.628
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,847,956
Number of Sequences: 164201
Number of extensions: 3278960
Number of successful extensions: 17466
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 16923
Number of HSP's gapped (non-prelim): 367
length of query: 1069
length of database: 59,974,054
effective HSP length: 121
effective length of query: 948
effective length of database: 40,105,733
effective search space: 38020234884
effective search space used: 38020234884
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 71 (32.0 bits)
Medicago: description of AC141111.4